Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 3
- plasma membrane 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G442300.1 | Wheat | plastid | 57.41 | 64.58 |
| TraesCS3A01G449900.1 | Wheat | plastid | 57.87 | 63.78 |
| HORVU3Hr1G097260.1 | Barley | cytosol | 56.48 | 63.21 |
| TraesCS3D01G443000.1 | Wheat | plastid | 57.41 | 62.94 |
| TraesCS3B01G486200.1 | Wheat | plastid | 56.94 | 61.81 |
| TraesCS3A01G450000.1 | Wheat | cytosol | 56.02 | 61.73 |
| TraesCS3B01G486300.1 | Wheat | plastid | 56.02 | 61.73 |
| TraesCS3B01G487000.1 | Wheat | plastid | 56.02 | 61.73 |
| TraesCS3A01G450100.1 | Wheat | cytosol | 55.56 | 61.22 |
| HORVU3Hr1G097270.1 | Barley | plastid | 54.63 | 61.14 |
| TraesCS3D01G442600.1 | Wheat | cytosol | 56.48 | 61.0 |
| TraesCS3A01G449500.1 | Wheat | cytosol | 47.69 | 60.95 |
| TraesCS3B01G486600.1 | Wheat | cytosol | 55.56 | 60.91 |
| TraesCS3D01G442200.1 | Wheat | cytosol, plastid | 55.09 | 60.71 |
| TraesCS3B01G486900.1 | Wheat | cytosol, plastid | 55.09 | 60.71 |
| TraesCS3A01G449700.1 | Wheat | plastid | 54.17 | 60.62 |
| TraesCS3D01G443100.1 | Wheat | cytosol, plastid | 55.56 | 60.61 |
| TraesCS3A01G449800.1 | Wheat | cytosol | 55.09 | 60.41 |
| HORVU3Hr1G097390.1 | Barley | plastid | 56.48 | 60.4 |
| TraesCS3D01G442800.1 | Wheat | cytosol, plastid | 56.02 | 60.2 |
| EES04157 | Sorghum | plastid | 56.02 | 60.2 |
| TraesCS3A01G450200.1 | Wheat | plastid | 53.24 | 58.08 |
| TraesCS3B01G487200.1 | Wheat | cytosol | 52.31 | 57.65 |
| Zm00001d011925_P001 | Maize | cytosol | 54.17 | 57.35 |
| HORVU3Hr1G097400.6 | Barley | cytosol, mitochondrion, plastid | 56.94 | 56.94 |
| EES04156 | Sorghum | plastid | 56.48 | 56.74 |
| HORVU3Hr1G097460.1 | Barley | mitochondrion, plastid | 55.56 | 56.6 |
| Zm00001d011926_P001 | Maize | cytosol | 52.78 | 56.44 |
| TraesCS3D01G442400.1 | Wheat | cytosol | 56.94 | 56.16 |
| HORVU3Hr1G097510.1 | Barley | plastid | 30.56 | 55.93 |
| HORVU3Hr1G097470.1 | Barley | plastid | 56.02 | 55.5 |
| TraesCS3A01G449600.1 | Wheat | mitochondrion | 32.41 | 55.12 |
| EES04155 | Sorghum | cytosol | 55.09 | 54.59 |
| Zm00001d042239_P001 | Maize | plastid | 55.09 | 54.34 |
| TraesCS3B01G486800.1 | Wheat | plastid | 56.48 | 53.98 |
| TraesCS3B01G487100.1 | Wheat | plastid | 50.0 | 51.67 |
| TraesCS3D01G442500.1 | Wheat | cytosol | 49.07 | 47.32 |
| Os01t0931700-00 | Rice | plastid | 25.93 | 34.15 |
| Os07t0672600-00 | Rice | plastid | 36.11 | 34.06 |
| Os01t0817650-00 | Rice | cytosol, extracellular, plastid | 25.0 | 25.35 |
| Os11t0120300-01 | Rice | cytosol | 25.93 | 25.34 |
| Os12t0120100-01 | Rice | cytosol | 25.93 | 25.23 |
| Os05t0311500-01 | Rice | cytosol | 23.15 | 23.26 |
| Os12t0120500-01 | Rice | plastid | 24.07 | 22.81 |
| Os11t0121000-00 | Rice | plastid | 23.61 | 22.27 |
| Os05t0484800-01 | Rice | plastid | 24.07 | 22.22 |
| Os01t0771000-01 | Rice | cytosol | 21.3 | 20.26 |
| Os05t0510100-01 | Rice | cytosol | 21.3 | 19.41 |
Protein Annotations
| EnsemblPlants:Os01t0931600-00 | EnsemblPlantsGene:Os01g0931600 | EntrezGene:107276721 | Gene3D:3.20.90.20 | InterPro:IPR025659 | InterPro:IPR038595 |
| InterPro:LOR | InterPro:LOR_sf | InterPro:Tubby-like_C | PANTHER:PTHR31087 | PANTHER:PTHR31087:SF12 | PFAM:PF04525 |
| ProteinID:BAD87328.1 | ProteinID:BAS76045.1 | ProteinID:EEE55946.1 | RefSeq:XP_015634986.1 | SEG:seg | SUPFAM:SSF54518 |
| UniParc:UPI00004C2946 | UniProt:Q5JMI3 | MapMan:35.1 | : | : | : |
Description
Tubby, C-terminal domain containing protein. (Os01t0931600-00)
Coordinates
chr1:-:40875375..40876354
Molecular Weight (calculated)
22471.0 Da
IEP (calculated)
9.236
GRAVY (calculated)
-0.100
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKIQPLPAA SPSAEWHHGD GGGGGVQGKQ AVYTVWMKSL VFNGHGCTVY GSDGRVAFRV DNYGCRGSRD VFFMDTAGTT LIGIQTKSFG MMKRWEASRH
101: HGGEKETTTA TVTTPWFRVQ RGRGPGGAMA TVTLHGGVGM AYRIDGCPSK SEYRISRGGG GGGGGDGEVV AEVARKQTAS GVVLGEDVLT LTVGPGADHL
201: LVLGLVVVCG LISRAM
101: HGGEKETTTA TVTTPWFRVQ RGRGPGGAMA TVTLHGGVGM AYRIDGCPSK SEYRISRGGG GGGGGDGEVV AEVARKQTAS GVVLGEDVLT LTVGPGADHL
201: LVLGLVVVCG LISRAM
001: MQIYRRPFET KTWQYRICPA ETMVKIHPDL TTSGAGEETS SPYLTTEQES FTIWMKSLVF NTNGCTVFDS KGNIIYRVDN YNSKSCREVY LMDLSGHVLF
101: TLRRQKFGLF KTWEGYRSSS ATVESTTKLE YFRVKNNVFQ VPNKDSSSSY RVNAGSCRND EQYCYKMVTR GSSLAIEDNC GKLLAEVKRK QSINGLKLGD
201: DVLTMMVESQ VDHSFIIGLV LAHSLINCIL
101: TLRRQKFGLF KTWEGYRSSS ATVESTTKLE YFRVKNNVFQ VPNKDSSSSY RVNAGSCRND EQYCYKMVTR GSSLAIEDNC GKLLAEVKRK QSINGLKLGD
201: DVLTMMVESQ VDHSFIIGLV LAHSLINCIL
Arabidopsis Description
Protein LURP-one-related 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUM1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.