CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028440.1-P	Field mustard	nucleus	100.0	100.0
CDY11660	Canola	cytosol	95.86	95.29
CDX74433	Canola	cytosol	76.92	78.31
CDY56031	Canola	cytosol	76.92	78.31
AT5G39720.1	Thale cress	cytosol	75.15	76.97
CDX74432	Canola	cytosol	68.05	67.65
CDY56032	Canola	cytosol	66.86	66.47
CDY04047	Canola	cytosol, extracellular, plastid	56.8	57.48
CDY44423	Canola	cytosol	56.21	56.89
CDY44424	Canola	cytosol	53.25	53.57
CDX86401	Canola	cytosol	52.66	52.98
CDY04046	Canola	cytosol	52.66	52.98
CDX86399	Canola	cytosol, nucleus, plastid	52.66	52.98
CDX86398	Canola	cytosol	50.89	52.76
CDX86400	Canola	cytosol	51.48	51.79
CDY20309	Canola	cytosol	37.87	42.11
CDY46146	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	38.46	41.67
GSMUA_Achr8P24650_001	Banana	mitochondrion	36.69	41.06
PGSC0003DMT400076081	Potato	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	37.87	41.03
CDX72301	Canola	cytosol	42.6	40.91
Zm00001d015242_P002	Maize	plastid	36.69	40.52
Os02t0141000-01	Rice	cytosol	36.69	40.52
CDY13422	Canola	cytosol	41.42	39.77
PGSC0003DMT400038470	Potato	cytosol	39.05	38.82
Solyc08g006070.2.1	Tomato	cytosol	39.05	38.82
GSMUA_Achr9P14100_001	Banana	plastid	38.46	38.46
VIT_04s0008g02840.t01	Wine grape	extracellular, plastid	38.46	37.36
TraesCS7B01G316500.1	Wheat	plastid	39.65	36.61
EES04498	Sorghum	plastid	33.14	36.6
TraesCS6B01G141200.1	Wheat	plastid	33.73	35.62
Zm00001d014692_P001	Maize	plastid	38.46	35.52
Os06t0702700-01	Rice	cytosol	39.65	35.26
EER90333	Sorghum	plastid	37.28	34.81
TraesCS7D01G409600.2	Wheat	plastid	39.65	34.54
TraesCS7A01G416300.1	Wheat	plastid	39.65	33.84
KRH61964	Soybean	cytosol	33.73	32.39
KRH52624	Soybean	cytosol	32.54	31.43
TraesCS3A01G536600.1	Wheat	endoplasmic reticulum, extracellular	27.81	31.33
TraesCS6D01G102200.1	Wheat	mitochondrion	34.32	30.21
TraesCS6A01G113100.1	Wheat	cytosol, extracellular, mitochondrion, plastid	33.73	29.53
HORVU6Hr1G020320.5	Barley	mitochondrion	33.73	29.38
CDX85232	Canola	cytosol	52.07	12.75

Protein Annotations

EnsemblPlants:CDX67437	EnsemblPlantsGene:GSBRNA2T00098538001	Gene3D:3.10.490.10	InterPro:AIG2-like	InterPro:GGCT-like	InterPro:GGCT-like_sf
PANTHER:PTHR31544	PFAM:PF06094	ProteinID:CDX67437	ProteinID:CDX67437.1	SUPFAM:SSF110857	UniParc:UPI00025432AA
MapMan:35.1	:	:	:	:	:

Description

BnaA07g14770D

Coordinates

chrLK031787:+:235791..236824

Molecular Weight (calculated)

19536.0 Da

IEP (calculated)

4.752

GRAVY (calculated)

-0.727

Length

169 amino acids

Sequence
(BLAST)

001: MSSSGTQLHN VFVYGSFQEP DVTYVMLERT PESISATLPG FTRKRLKGCL YPCIVPSEEG EVHGKVIMGL TDEELRNLDA VEGNEFERVT VGVVREDNSE
101: KMPAKTYIWI NKNDPDLDGE WDFEEWKRLH KKKFIETFKE IMEWMKDPQG KGRDTFSHAL REDQVNQSS

Best Arabidopsis Sequence Match ( AT5G39720.1 )
(BLAST)

001: MCSSDSLQLH NVFVYGSFQD PDVINVMLDR TPEIVSATLP GFQRFRLKGR LYPCIVPSEK GEVHGKVLMG VTSDELENLD AVEGNEYERV TVGIVREDNS
101: EKMAVKTYMW INKADPDMFG EWNFEEWKRL HKKKFIETFK KIMECKKKPQ GQGNDDISHV LREDQ

Arabidopsis Description

AIG2LAAt5g39720 [Source:UniProtKB/TrEMBL;Acc:A2RVP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.