Factsheet for TraesCS6D01G102200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G141200.1	Wheat	plastid	79.17	95.0
TraesCS6A01G113100.1	Wheat	cytosol, extracellular, mitochondrion, plastid	85.94	85.49
HORVU6Hr1G020320.5	Barley	mitochondrion	77.6	76.8
Os02t0141000-01	Rice	cytosol	59.9	75.16
EES04498	Sorghum	plastid	55.21	69.28
Zm00001d015242_P002	Maize	plastid	53.65	67.32
GSMUA_Achr8P24650_001	Banana	mitochondrion	50.0	63.58
CDY20309	Canola	cytosol	45.83	57.89
Bra032099.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	44.79	55.13
CDY46146	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	44.27	54.49
PGSC0003DMT400076081	Potato	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	43.23	53.21
AT2G24390.1	Thale cress	cytosol	41.67	52.63
TraesCS3A01G536600.1	Wheat	endoplasmic reticulum, extracellular	40.62	52.0
Solyc08g006070.2.1	Tomato	cytosol	42.71	48.24
PGSC0003DMT400038470	Potato	cytosol	42.19	47.65
TraesCS7D01G409600.2	Wheat	plastid	47.92	47.42
VIT_04s0008g02840.t01	Wine grape	extracellular, plastid	42.71	47.13
KRH61964	Soybean	cytosol	41.67	45.45
KRH52624	Soybean	cytosol	41.15	45.14
AT4G31310.2	Thale cress	cytosol	37.5	41.38
CDX72301	Canola	cytosol	37.5	40.91
Bra024014.1-P	Field mustard	cytosol	37.5	40.91
CDY13422	Canola	cytosol	37.5	40.91
CDY56031	Canola	cytosol	29.69	34.34
CDX67437	Canola	nucleus	30.21	34.32
Bra028440.1-P	Field mustard	nucleus	30.21	34.32
CDY11660	Canola	cytosol	30.21	34.12
CDX74433	Canola	cytosol	29.17	33.73
AT5G39720.1	Thale cress	cytosol	28.65	33.33
Bra025649.1-P	Field mustard	cytosol	23.96	32.62
CDY04047	Canola	cytosol, extracellular, plastid	28.12	32.34
CDX86399	Canola	cytosol, nucleus, plastid	28.12	32.14
Bra025367.1-P	Field mustard	cytosol	28.12	32.14
CDX74432	Canola	cytosol	28.12	31.76
CDY44423	Canola	cytosol	27.6	31.74
Bra033071.1-P	Field mustard	cytosol	27.6	31.74
CDX86400	Canola	cytosol	27.6	31.55
CDX86398	Canola	cytosol	26.56	31.29
Bra025368.1-P	Field mustard	cytosol	26.56	31.29
CDY56032	Canola	cytosol	27.6	31.18
Bra025366.1-P	Field mustard	cytosol	27.08	30.95
CDY44424	Canola	cytosol	27.08	30.95
Bra033070.1-P	Field mustard	cytosol	27.08	30.95
CDX86401	Canola	cytosol	26.56	30.36
Bra025365.1-P	Field mustard	cytosol	26.56	30.36
AT5G39730.1	Thale cress	cytosol	27.08	30.23
AT3G28950.1	Thale cress	cytosol	25.52	29.7
CDY04046	Canola	cytosol	25.52	29.17
AT3G28940.1	Thale cress	cytosol	25.52	28.99
AT3G28930.1	Thale cress	cytosol	25.52	28.82
Bra025647.1-P	Field mustard	mitochondrion	25.52	27.22
CDX85232	Canola	cytosol	28.12	7.83

Protein Annotations

EnsemblPlants:TraesCS6D01G102200.1	EnsemblPlantsGene:TraesCS6D01G102200	Gene3D:3.10.490.10	InterPro:AIG2-like	InterPro:GGCT-like	InterPro:GGCT-like_sf
ncoils:Coil	PANTHER:PTHR31544	PANTHER:PTHR31544:SF3	PFAM:PF06094	SEG:seg	SUPFAM:SSF110857
TIGR:cd06661	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:65495916..65497506

Molecular Weight (calculated)

21749.9 Da

IEP (calculated)

4.685

GRAVY (calculated)

-0.253

Length

192 amino acids

Sequence
(BLAST)

001: MLIQYQIRIF VQRSASVSPS PLRSCHRRLL SPRMASPPPP APAAAAAHSV FVYGTLMAEE VVRVLLGRVP PSSPALLPNH QRLSIRGRVY PAILPVDGSK
101: VPGKVWQGIT DRELDVLDIF EDEEYVRETV GISLADSADM IAYAYIWGNV DDPDLYGEWD FDEWKKVHLK DYITMTQDFR EELEQLESET HD

Best Arabidopsis Sequence Match ( AT2G24390.2 )
(BLAST)

001: MSGTVTMHSV FVYGSLMADD VVRLLLNRIP QTASATLPDL FSIKGRVYPA IIPAKSDKVS GKVLFGITDD ELNVLDEFED VEYERENVQV LLTDSSDEKL
101: QTKTYVWAKK DDPDLYGTWD FEEWKQLHME GFLKMTKEFA EELNLPKSEI

Arabidopsis Description

AIG2LDAIG2-like protein D [Source:UniProtKB/Swiss-Prot;Acc:A8MRP2]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.