Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67437 | Canola | nucleus | 95.29 | 95.86 |
| CDY56031 | Canola | cytosol | 77.65 | 79.52 |
| CDX74433 | Canola | cytosol | 76.47 | 78.31 |
| AT5G39720.1 | Thale cress | cytosol | 75.29 | 77.58 |
| CDX74432 | Canola | cytosol | 69.41 | 69.41 |
| CDY56032 | Canola | cytosol | 68.24 | 68.24 |
| CDY04047 | Canola | cytosol, extracellular, plastid | 57.65 | 58.68 |
| CDY44423 | Canola | cytosol | 57.06 | 58.08 |
| CDY44424 | Canola | cytosol | 54.12 | 54.76 |
| CDX86399 | Canola | cytosol, nucleus, plastid | 53.53 | 54.17 |
| CDX86401 | Canola | cytosol | 53.53 | 54.17 |
| CDY04046 | Canola | cytosol | 53.53 | 54.17 |
| CDX86398 | Canola | cytosol | 51.18 | 53.37 |
| CDX86400 | Canola | cytosol | 52.35 | 52.98 |
| CDX72301 | Canola | cytosol | 43.53 | 42.05 |
| GSMUA_Achr8P24650_001 | Banana | mitochondrion | 37.06 | 41.72 |
| PGSC0003DMT400076081 | Potato | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 38.24 | 41.67 |
| CDY20309 | Canola | cytosol | 37.06 | 41.45 |
| CDY46146 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 37.65 | 41.03 |
| CDY13422 | Canola | cytosol | 42.35 | 40.91 |
| Zm00001d015242_P002 | Maize | plastid | 36.47 | 40.52 |
| Os02t0141000-01 | Rice | cytosol | 36.47 | 40.52 |
| Solyc08g006070.2.1 | Tomato | cytosol | 38.82 | 38.82 |
| PGSC0003DMT400038470 | Potato | cytosol | 38.82 | 38.82 |
| GSMUA_Achr9P14100_001 | Banana | plastid | 37.65 | 37.87 |
| VIT_04s0008g02840.t01 | Wine grape | extracellular, plastid | 38.24 | 37.36 |
| EES04498 | Sorghum | plastid | 32.94 | 36.6 |
| Zm00001d014692_P001 | Maize | plastid | 38.82 | 36.07 |
| TraesCS6B01G141200.1 | Wheat | plastid | 33.53 | 35.62 |
| TraesCS7B01G316500.1 | Wheat | plastid | 38.24 | 35.52 |
| EER90333 | Sorghum | plastid | 37.06 | 34.81 |
| Os06t0702700-01 | Rice | cytosol | 38.82 | 34.74 |
| TraesCS7D01G409600.2 | Wheat | plastid | 38.24 | 33.51 |
| KRH61964 | Soybean | cytosol | 34.12 | 32.95 |
| TraesCS7A01G416300.1 | Wheat | plastid | 38.24 | 32.83 |
| KRH52624 | Soybean | cytosol | 32.94 | 32.0 |
| TraesCS3A01G536600.1 | Wheat | endoplasmic reticulum, extracellular | 27.06 | 30.67 |
| TraesCS6D01G102200.1 | Wheat | mitochondrion | 34.12 | 30.21 |
| TraesCS6A01G113100.1 | Wheat | cytosol, extracellular, mitochondrion, plastid | 33.53 | 29.53 |
| HORVU6Hr1G020320.5 | Barley | mitochondrion | 33.53 | 29.38 |
| CDX85232 | Canola | cytosol | 52.35 | 12.9 |
Protein Annotations
| EnsemblPlants:CDY11660 | EnsemblPlantsGene:GSBRNA2T00049805001 | Gene3D:3.10.490.10 | InterPro:AIG2-like | InterPro:GGCT-like | InterPro:GGCT-like_sf |
| PANTHER:PTHR31544 | PFAM:PF06094 | ProteinID:CDY11660 | ProteinID:CDY11660.1 | SUPFAM:SSF110857 | UniParc:UPI0004EB9C0C |
| UniProt:A0A078FBA0 | MapMan:35.1 | : | : | : | : |
Description
BnaC06g12680DBnaC06g12680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FBA0]
Coordinates
chrLK032013:+:3257..4118
Molecular Weight (calculated)
19635.1 Da
IEP (calculated)
4.752
GRAVY (calculated)
-0.685
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSGAQLHN VFVYGSFQEP DVTYVMLERT PESISATLPG FTRMRLKGCL YPCIVPSEEG EVHGKVIMGL TDEELRNLDA VESNEFERVT VGVVREDNSE
101: KMPVKTYIWI NKNDPDLDGE WDFEEWKRLH KKKFIETFKE IMEWKKDPQG KGRDTFSHAL REDQVNAQSS
101: KMPVKTYIWI NKNDPDLDGE WDFEEWKRLH KKKFIETFKE IMEWKKDPQG KGRDTFSHAL REDQVNAQSS
001: MCSSDSLQLH NVFVYGSFQD PDVINVMLDR TPEIVSATLP GFQRFRLKGR LYPCIVPSEK GEVHGKVLMG VTSDELENLD AVEGNEYERV TVGIVREDNS
101: EKMAVKTYMW INKADPDMFG EWNFEEWKRL HKKKFIETFK KIMECKKKPQ GQGNDDISHV LREDQ
101: EKMAVKTYMW INKADPDMFG EWNFEEWKRL HKKKFIETFK KIMECKKKPQ GQGNDDISHV LREDQ
Arabidopsis Description
AIG2LAAt5g39720 [Source:UniProtKB/TrEMBL;Acc:A2RVP6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.