Factsheet for TraesCS4B01G392900.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, peroxisome, plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G391600.1	Wheat	cytosol	67.74	58.58
TraesCS1B01G423000.1	Wheat	cytosol, nucleus, peroxisome	52.61	50.12
TraesCS6B01G095400.1	Wheat	cytosol	38.96	49.84
TraesCS6B01G032800.1	Wheat	cytosol	48.39	48.75
TraesCS6B01G019500.1	Wheat	cytosol	30.27	48.22
TraesCS6B01G095500.1	Wheat	cytosol	48.14	48.14
TraesCS6B01G128400.1	Wheat	cytosol	55.09	48.05
TraesCS6B01G017300.1	Wheat	cytosol	50.62	47.66
TraesCS3B01G128100.1	Wheat	cytosol	30.52	47.13
TraesCS3B01G497000.1	Wheat	cytosol	46.15	47.09
TraesCS1B01G083300.1	Wheat	cytosol	29.53	47.04
TraesCS5B01G357900.1	Wheat	cytosol, peroxisome, plastid	51.12	45.68
TraesCS6B01G032600.1	Wheat	cytosol	44.17	45.18
TraesCS6B01G032500.1	Wheat	cytosol	44.17	45.18
TraesCS3B01G496900.1	Wheat	cytosol	45.41	44.96
TraesCS3B01G496700.1	Wheat	cytosol	44.91	44.47
TraesCS3B01G466200.1	Wheat	cytosol	45.66	44.23
TraesCS3B01G497100.1	Wheat	cytosol, nucleus, peroxisome	39.7	43.01
TraesCS3B01G496600.2	Wheat	cytosol	44.66	42.86
TraesCS6B01G120000.1	Wheat	cytosol	18.36	42.29
TraesCS6B01G120300.1	Wheat	cytosol	15.38	41.61
TraesCS6B01G128500.1	Wheat	cytosol	42.93	41.59
EES04945	Sorghum	cytosol	42.18	40.48
Os02t0288925-00	Rice	cytosol	37.97	36.08
TraesCS3B01G504400.1	Wheat	cytosol	34.24	33.74
TraesCS3B01G506300.1	Wheat	cytosol	33.5	33.33
TraesCS3B01G504300.1	Wheat	cytosol	34.24	33.25
TraesCS3B01G504600.1	Wheat	cytosol, peroxisome, plastid	33.5	32.14
TraesCS3B01G506100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	32.01	31.54
TraesCS3B01G505900.1	Wheat	cytosol	31.51	31.2
TraesCS7B01G400700.1	Wheat	cytosol	18.11	28.08
TraesCS3B01G505600.1	Wheat	cytosol, golgi, peroxisome	16.87	27.76
TraesCS5B01G497300.1	Wheat	cytosol	43.18	20.49
TraesCS7B01G481600.2	Wheat	cytosol, mitochondrion, nucleus, plastid	45.16	19.12

Protein Annotations

EnsemblPlants:TraesCS4B01G392900.1	EnsemblPlantsGene:TraesCS4B01G392900	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR33207	PANTHER:PTHR33207:SF22	PFAM:PF12937
SEG:seg	SUPFAM:SSF81383	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr4B:+:667677619..667680208

Molecular Weight (calculated)

46272.5 Da

IEP (calculated)

7.314

GRAVY (calculated)

-0.089

Length

403 amino acids

Sequence
(BLAST)

001: MVDADEMPQP IYAENKPCAE IESRRHSPTL MLAVVTKVLD DDDLLAEILL RVVFPTTLVR AALVCKRWYH HASDRRFLRR FRKLHPPCLL GFYVVFKGAR
101: FIPMQPQPPE LAAVVRHVAG YRFGNLIDLK DCRNGIVLTR DRKQGVLTYK VPLCPERGMP TVPPLPRTQG GSIFYFGEIL SKEEGDGLSC FYMVVEVSKE
201: TKEVTVSVYM LQDGVWCMVT SSKNQLHWPL PRPNPVLVDN KIYMGSARGN NILVLDLSAS TFSVIHLPQG VEYASSEIKL SRTDDASGVY LIHLRPMEFQ
301: LCVWLHKEDN WLLVDTMYLH EMCAILGKTD RRYVHIRQVG DNDQFVLLQT SQYIFYLDIK CRTLHKVDEM TVDEQCYADI HPFMMIWPPI FPALKDDPAR
401: NAI

Best Arabidopsis Sequence Match ( AT3G52320.1 )
(BLAST)

001: MGSSLCVAVR KKEKQKQKKT VVFLPEIPEE MLIDILIRLP AKSLMRFKCV SKLWLSLITS RYFTNRFFKP SSPSCLFAYL VDRENQSKYL LLQSSSSSRH
101: DHSDTSVSVI DQHSTIPIMG GYLVNAARGL LCYRTGRRVK VCNPSTRQIV ELPIMRSKTN VWNWFGHDPF HDEYKVLSLF WEVTKEQTVV RSEHQVLVLG
201: VGASWRNTKS HHTPHRPFHP YSRGMTIDGV LYYSARTDAN RCVLMSFDLS SEEFNLIELP FENWSRTIHM NYQGKVATCQ YMRLASDGFV DVCVLEDADK
301: SQWSNKKTFV LPISQMNFVH GDRLVVGASR DSGKVLMRKA NLLRNQHARF FLYDMERNEI ARRIEIRPSL LGSFNKTNQF LKVCYTFQTK

Arabidopsis Description

Putative F-box protein At3g52320 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT50]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.