Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G497500.1 | Wheat | cytosol | 26.15 | 94.47 |
| HORVU5Hr1G114130.1 | Barley | cytosol, nucleus, plastid | 84.57 | 79.6 |
| TraesCS6B01G128500.1 | Wheat | cytosol | 33.33 | 68.03 |
| TraesCS7B01G481600.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 69.49 | 61.97 |
| TraesCS3B01G497000.1 | Wheat | cytosol | 22.85 | 49.11 |
| TraesCS3B01G466200.1 | Wheat | cytosol | 23.91 | 48.8 |
| TraesCS3B01G496600.2 | Wheat | cytosol | 23.67 | 47.86 |
| TraesCS3B01G496900.1 | Wheat | cytosol | 22.85 | 47.67 |
| TraesCS3B01G128100.1 | Wheat | cytosol | 14.61 | 47.51 |
| TraesCS3B01G496700.1 | Wheat | cytosol | 22.73 | 47.42 |
| TraesCS6B01G032800.1 | Wheat | cytosol | 21.67 | 46.0 |
| TraesCS3B01G497100.1 | Wheat | cytosol, nucleus, peroxisome | 19.79 | 45.16 |
| TraesCS4B01G392900.1 | Wheat | cytosol, peroxisome, plastid | 20.49 | 43.18 |
| TraesCS1B01G423000.1 | Wheat | cytosol, nucleus, peroxisome | 21.44 | 43.03 |
| TraesCS5B01G357900.1 | Wheat | cytosol, peroxisome, plastid | 22.85 | 43.02 |
| TraesCS6B01G017300.1 | Wheat | cytosol | 21.55 | 42.76 |
| TraesCS6B01G120300.1 | Wheat | cytosol | 7.42 | 42.28 |
| TraesCS6B01G095500.1 | Wheat | cytosol | 19.91 | 41.94 |
| TraesCS6B01G032600.1 | Wheat | cytosol | 19.43 | 41.88 |
| TraesCS6B01G032500.1 | Wheat | cytosol | 19.32 | 41.62 |
| TraesCS1B01G083300.1 | Wheat | cytosol | 12.25 | 41.11 |
| TraesCS6B01G019500.1 | Wheat | cytosol | 12.13 | 40.71 |
| TraesCS4B01G391600.1 | Wheat | cytosol | 22.03 | 40.13 |
| TraesCS6B01G120000.1 | Wheat | cytosol | 8.24 | 40.0 |
| TraesCS6B01G095400.1 | Wheat | cytosol | 14.49 | 39.05 |
| TraesCS6B01G128400.1 | Wheat | cytosol | 21.2 | 38.96 |
| EES04945 | Sorghum | cytosol | 18.61 | 37.62 |
| Os02t0288925-00 | Rice | cytosol | 17.67 | 35.38 |
| TraesCS3B01G506100.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 15.55 | 32.27 |
| TraesCS3B01G505900.1 | Wheat | cytosol | 14.96 | 31.2 |
| TraesCS3B01G506300.1 | Wheat | cytosol | 14.84 | 31.11 |
| TraesCS3B01G504600.1 | Wheat | cytosol, peroxisome, plastid | 15.19 | 30.71 |
| TraesCS3B01G504400.1 | Wheat | cytosol | 14.72 | 30.56 |
| TraesCS3B01G504300.1 | Wheat | cytosol | 14.84 | 30.36 |
| TraesCS7B01G400700.1 | Wheat | cytosol | 8.72 | 28.46 |
| TraesCS3B01G505600.1 | Wheat | cytosol, golgi, peroxisome | 7.3 | 25.31 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR001680 | InterPro:IPR001810 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 |
| PFAM:PF00646 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR44083 | PANTHER:PTHR44083:SF3 |
| SMART:SM00320 | SUPFAM:SSF50978 | SUPFAM:SSF81383 | InterPro:Topless_fam | EnsemblPlantsGene:TraesCS5B01G497300 | EnsemblPlants:TraesCS5B01G497300.1 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : |
Description
No Description!
Coordinates
chr5B:-:664376058..664380095
Molecular Weight (calculated)
96301.0 Da
IEP (calculated)
6.390
GRAVY (calculated)
-0.284
Length
849 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKLSPTGHI PQPSRSLDDL PMKVACTLSQ GSNVTSMDFH PSRHTLLLVG SANGEFTLWE ISMHERLVTK PFEIWDMQAC STQFQGVMAK DSSMAVNQVT
101: WSPDGELIGV AFTKHLIHLH AYRHPNETYQ FVEIEAHSGR VNDIVFSRSR KQLYVVTCGD DKLIKVWDMH GQKIYSFEGH EAPVYSICPH HIDQVKFIFS
201: ISLDGKMKTW LYEYLGTKLD FDVPGKWCGA ILNSTDGTRL FSCGTSKEGD THLVEWNQIE GSVERSYSGF RKKPSGVVQG VVQFDTARNH ILAAGEDNKI
301: MFWDADNTNM LTCIEAGGGL PSFPRLRFNK EGNLPAVNTV DCGFKILANT DGLRSLPAFG NVPSEVFRSP YEASEMKVSG PPIVAGISPN IGQTDHLHTK
401: YPAKPSQVNG SDPAFVSVDK KQRISEEKSD KAKPWELKEV QQFRVDTMLE TDHASKVSKV LDDDNLLREI IIRVGFPTTL VHAALVCKRW YQHASEPAFL
501: RLFHERHPPR LLGFYIENRK DYNMASIRFI PMLPQPPELS TVIRTMQSYG WGFYHGAPAN FRCSRKGRFL VSLYNLVNDN NFTSRVHSPL CPKRGLTVIP
601: PLPHIQIQDD YYYSMNDLLL VEEADDVSYF HVLLVVNMQR TKYTVHVNML RHGDGVWRTC LTFDRDQLLD PEWEPKAVLA NNKIYIASTH NSIDFFDLTT
701: SSISTVQLPH GVEYGDRDTM LAPSDDASDV YLIHAKNLQL DIWLHKGDNW LLVETISLRD MVANLRIPGC EVEDEPTAPL WINHVGSYAE FVFLEMGRCA
801: LHLDVKCRQL RKVYDMAEEE LDLGDIHPLT MIWPPIFPDL TNNLARSVI
101: WSPDGELIGV AFTKHLIHLH AYRHPNETYQ FVEIEAHSGR VNDIVFSRSR KQLYVVTCGD DKLIKVWDMH GQKIYSFEGH EAPVYSICPH HIDQVKFIFS
201: ISLDGKMKTW LYEYLGTKLD FDVPGKWCGA ILNSTDGTRL FSCGTSKEGD THLVEWNQIE GSVERSYSGF RKKPSGVVQG VVQFDTARNH ILAAGEDNKI
301: MFWDADNTNM LTCIEAGGGL PSFPRLRFNK EGNLPAVNTV DCGFKILANT DGLRSLPAFG NVPSEVFRSP YEASEMKVSG PPIVAGISPN IGQTDHLHTK
401: YPAKPSQVNG SDPAFVSVDK KQRISEEKSD KAKPWELKEV QQFRVDTMLE TDHASKVSKV LDDDNLLREI IIRVGFPTTL VHAALVCKRW YQHASEPAFL
501: RLFHERHPPR LLGFYIENRK DYNMASIRFI PMLPQPPELS TVIRTMQSYG WGFYHGAPAN FRCSRKGRFL VSLYNLVNDN NFTSRVHSPL CPKRGLTVIP
601: PLPHIQIQDD YYYSMNDLLL VEEADDVSYF HVLLVVNMQR TKYTVHVNML RHGDGVWRTC LTFDRDQLLD PEWEPKAVLA NNKIYIASTH NSIDFFDLTT
701: SSISTVQLPH GVEYGDRDTM LAPSDDASDV YLIHAKNLQL DIWLHKGDNW LLVETISLRD MVANLRIPGC EVEDEPTAPL WINHVGSYAE FVFLEMGRCA
801: LHLDVKCRQL RKVYDMAEEE LDLGDIHPLT MIWPPIFPDL TNNLARSVI
0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAEGF PPLGAHGPFQ PTPSPVPTPL AGWMSSPSSV PHPAVSGGPI ALGAPSIQAA LKHPRTPPSN SAVDYPSGDS
0301: DHVSKRTRPM GISDEVSLGV NMLPMTFPGQ AHGHNQTFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDIAF STPNKQLCVT TCGDDKTIKV WDAATGVKRY
0501: TFEGHEAPVY SICPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYEAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDTIQ LLTAIDADGG LQASPRIRFN KEGSLLAVSA NDNMIKVMAN SDGLRLLHTV ENLSSESSKP AINSIPMVER
0701: PASVVSIPGM NGDSRNMVDV KPVITEESND KSKVWKLTEV GEPSQCRSLR LPENMRVTKI SRLIFTNSGN AILALASNAI HLLWKWQRND RNATGKATAS
0801: LPPQQWQPAS GILMTNDVAE TNPEEAVPCF ALSKNDSYVM SASGGKISLF NMMTFKTMAT FMPPPPAATF LAFHPQDNNI IAIGMDDSTI QIYNVRVDEV
0901: KSKLKGHSKR ITGLAFSNVL NVLVSSGADA QLCVWNTDGW EKQKSKVLQI PQGRSTSSLS DTRVQFHQDQ VHFLVVHETQ LAIYETTKLE CMKQWPVRES
1001: AAPITHATFS CDSQLIYTSF MDATICVFSS ANLRLRCRVN PSAYLPASLS NSNVHPLVIA AHPQESNMFA VGLSDGGVHI FEPLESEGKW GVAPPPENGS
1101: ASAVTATPSV GASASDQPQR
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAEGF PPLGAHGPFQ PTPSPVPTPL AGWMSSPSSV PHPAVSGGPI ALGAPSIQAA LKHPRTPPSN SAVDYPSGDS
0301: DHVSKRTRPM GISDEVSLGV NMLPMTFPGQ AHGHNQTFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDIAF STPNKQLCVT TCGDDKTIKV WDAATGVKRY
0501: TFEGHEAPVY SICPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYEAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDTIQ LLTAIDADGG LQASPRIRFN KEGSLLAVSA NDNMIKVMAN SDGLRLLHTV ENLSSESSKP AINSIPMVER
0701: PASVVSIPGM NGDSRNMVDV KPVITEESND KSKVWKLTEV GEPSQCRSLR LPENMRVTKI SRLIFTNSGN AILALASNAI HLLWKWQRND RNATGKATAS
0801: LPPQQWQPAS GILMTNDVAE TNPEEAVPCF ALSKNDSYVM SASGGKISLF NMMTFKTMAT FMPPPPAATF LAFHPQDNNI IAIGMDDSTI QIYNVRVDEV
0901: KSKLKGHSKR ITGLAFSNVL NVLVSSGADA QLCVWNTDGW EKQKSKVLQI PQGRSTSSLS DTRVQFHQDQ VHFLVVHETQ LAIYETTKLE CMKQWPVRES
1001: AAPITHATFS CDSQLIYTSF MDATICVFSS ANLRLRCRVN PSAYLPASLS NSNVHPLVIA AHPQESNMFA VGLSDGGVHI FEPLESEGKW GVAPPPENGS
1101: ASAVTATPSV GASASDQPQR
Arabidopsis Description
TPR1Topless-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV90]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.