Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G497300.1 | Wheat | cytosol | 61.97 | 69.49 |
| TraesCS6B01G128500.1 | Wheat | cytosol | 29.31 | 67.07 |
| TraesCS2D01G057400.2 | Wheat | cytosol | 26.26 | 58.55 |
| TraesCS2A01G058400.1 | Wheat | cytosol | 23.11 | 58.51 |
| TraesCS3B01G466200.1 | Wheat | cytosol | 21.74 | 49.76 |
| TraesCS3B01G496600.2 | Wheat | cytosol | 21.85 | 49.52 |
| TraesCS3B01G128100.1 | Wheat | cytosol | 13.45 | 49.04 |
| TraesCS3B01G496900.1 | Wheat | cytosol | 20.27 | 47.42 |
| TraesCS3B01G497000.1 | Wheat | cytosol | 19.43 | 46.84 |
| TraesCS6B01G032800.1 | Wheat | cytosol | 19.64 | 46.75 |
| TraesCS6B01G032600.1 | Wheat | cytosol | 18.8 | 45.43 |
| TraesCS3B01G496700.1 | Wheat | cytosol | 19.33 | 45.21 |
| TraesCS4B01G392900.1 | Wheat | cytosol, peroxisome, plastid | 19.12 | 45.16 |
| TraesCS1B01G423000.1 | Wheat | cytosol, nucleus, peroxisome | 20.06 | 45.15 |
| TraesCS3B01G497100.1 | Wheat | cytosol, nucleus, peroxisome | 17.54 | 44.89 |
| TraesCS6B01G032500.1 | Wheat | cytosol | 18.49 | 44.67 |
| TraesCS6B01G019500.1 | Wheat | cytosol | 11.87 | 44.66 |
| TraesCS6B01G017300.1 | Wheat | cytosol | 19.96 | 44.39 |
| TraesCS5B01G357900.1 | Wheat | cytosol, peroxisome, plastid | 20.9 | 44.12 |
| TraesCS1B01G083300.1 | Wheat | cytosol | 11.66 | 43.87 |
| TraesCS4B01G391600.1 | Wheat | cytosol | 21.43 | 43.78 |
| TraesCS6B01G095500.1 | Wheat | cytosol | 17.65 | 41.69 |
| TraesCS6B01G095400.1 | Wheat | cytosol | 13.55 | 40.95 |
| TraesCS6B01G120300.1 | Wheat | cytosol | 6.41 | 40.94 |
| TraesCS6B01G128400.1 | Wheat | cytosol | 19.85 | 40.91 |
| TraesCS6B01G120000.1 | Wheat | cytosol | 7.46 | 40.57 |
| EES04945 | Sorghum | cytosol | 16.6 | 37.62 |
| Os02t0288925-00 | Rice | cytosol | 16.28 | 36.56 |
| TraesCS3B01G506300.1 | Wheat | cytosol | 13.87 | 32.59 |
| TraesCS3B01G504300.1 | Wheat | cytosol | 13.87 | 31.81 |
| TraesCS7B01G400700.1 | Wheat | cytosol | 8.61 | 31.54 |
| TraesCS3B01G504600.1 | Wheat | cytosol, peroxisome, plastid | 13.76 | 31.19 |
| TraesCS3B01G506100.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 13.34 | 31.05 |
| TraesCS3B01G504400.1 | Wheat | cytosol | 12.92 | 30.07 |
| TraesCS3B01G505900.1 | Wheat | cytosol | 12.71 | 29.73 |
| TraesCS3B01G505600.1 | Wheat | cytosol, golgi, peroxisome | 6.83 | 26.53 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:2.130.10.10 | MapMan:35.1 | InterPro:F-box-like_dom_sf | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | ScanProsite:PS00678 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR44083 | PANTHER:PTHR44083:SF3 | SMART:SM00320 | SUPFAM:SSF50978 |
| SUPFAM:SSF81383 | InterPro:Topless_fam | EnsemblPlantsGene:TraesCS7B01G481600 | EnsemblPlants:TraesCS7B01G481600.2 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7B:+:736134983..736141380
Molecular Weight (calculated)
106678.0 Da
IEP (calculated)
7.271
GRAVY (calculated)
-0.297
Length
952 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQRRRRRPQ SAPSPASDHD SSSLAAAPGR QEGTMRARGG RHLSTPPPST PGDRPEYKQL MERPSPSGHV IDEVTYPTPI PQPSWSLDDL PTKVACTLAQ
101: GSNVTSMDFH PFHHTLLLVG SANGEFTLWE IGMRERLVSK PFKIWNMQAC SAQFQCVVSK DPSIAISRVT WSPDGDLIGV AFTKHLIHLH AYQHPNETRQ
201: IVEIEAHSGG VNDIAFSQPN KQLCVVTCGD DKLIRVWDMH GQKIYSFEGH EASVYSICPH HMECIQFIFS TSIDGKIKAW LYDNSGARVA SDAPGKWCTT
301: MLYSANGTRL FSCGTSREGE SHLVEWNHND VSIKRTYSGF RKKPSGVVQG VVQFDTAQNR ILAAGEDNQI KFWDVDSTSM LTCIEADGGL PSLPRIRFNK
401: EGNLLAVTTV GNGFKILANA DGLRSLPAFG NQPFEVFKLP YEASAMKVSG APVVAGISSN IGRMDHLDRN SPVKLSPIMN GGDPTSRSMD MKPIISKEKL
501: DKGKPWELIE GLNAERFCVA TMPETPYRAS KVRSICPEES VPHALNSKND SYVMSACAGK ISKVLNDDDL LREIIIRISL PATLVRAALV CKRWYHLASE
601: PAFLRWFREC HPPCLLGFFL EDQEDSNAAP FRFFPMLPQP PELAAAVHRV ASYSLDYYRG APANLLCSRK GRVLISLYNQ VDRNKFAIGV HSPLCHERGQ
701: SVIPSFPHVQ IQDDYSHRMS DLLVVEEADG LSYLHLLVDS NMQRTKSMVH VHMLRHSEGV WRTYLTLETD QLLDPRREPK VLANSKIYIP SAQSDILVLD
801: LTASSICTVQ LPQGVEYGDK DTMLSLADEA SGVYLIHTKK LQLHIWLYKG DNWLVVDTIC LLEMFANLRM SGCMVEDEST APLRINHVGD YAEFVFLEKG
901: RYALHLDIKY KQIRKVYDTT KEDRRFGTIH PFMMIWPPSF PALKDDHTRN AM
101: GSNVTSMDFH PFHHTLLLVG SANGEFTLWE IGMRERLVSK PFKIWNMQAC SAQFQCVVSK DPSIAISRVT WSPDGDLIGV AFTKHLIHLH AYQHPNETRQ
201: IVEIEAHSGG VNDIAFSQPN KQLCVVTCGD DKLIRVWDMH GQKIYSFEGH EASVYSICPH HMECIQFIFS TSIDGKIKAW LYDNSGARVA SDAPGKWCTT
301: MLYSANGTRL FSCGTSREGE SHLVEWNHND VSIKRTYSGF RKKPSGVVQG VVQFDTAQNR ILAAGEDNQI KFWDVDSTSM LTCIEADGGL PSLPRIRFNK
401: EGNLLAVTTV GNGFKILANA DGLRSLPAFG NQPFEVFKLP YEASAMKVSG APVVAGISSN IGRMDHLDRN SPVKLSPIMN GGDPTSRSMD MKPIISKEKL
501: DKGKPWELIE GLNAERFCVA TMPETPYRAS KVRSICPEES VPHALNSKND SYVMSACAGK ISKVLNDDDL LREIIIRISL PATLVRAALV CKRWYHLASE
601: PAFLRWFREC HPPCLLGFFL EDQEDSNAAP FRFFPMLPQP PELAAAVHRV ASYSLDYYRG APANLLCSRK GRVLISLYNQ VDRNKFAIGV HSPLCHERGQ
701: SVIPSFPHVQ IQDDYSHRMS DLLVVEEADG LSYLHLLVDS NMQRTKSMVH VHMLRHSEGV WRTYLTLETD QLLDPRREPK VLANSKIYIP SAQSDILVLD
801: LTASSICTVQ LPQGVEYGDK DTMLSLADEA SGVYLIHTKK LQLHIWLYKG DNWLVVDTIC LLEMFANLRM SGCMVEDEST APLRINHVGD YAEFVFLEKG
901: RYALHLDIKY KQIRKVYDTT KEDRRFGTIH PFMMIWPPSF PALKDDHTRN AM
0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAEGF PPLGAHGPFQ PTPSPVPTPL AGWMSSPSSV PHPAVSGGPI ALGAPSIQAA LKHPRTPPSN SAVDYPSGDS
0301: DHVSKRTRPM GISDEVSLGV NMLPMTFPGQ AHGHNQTFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDIAF STPNKQLCVT TCGDDKTIKV WDAATGVKRY
0501: TFEGHEAPVY SICPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYEAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDTIQ LLTAIDADGG LQASPRIRFN KEGSLLAVSA NDNMIKVMAN SDGLRLLHTV ENLSSESSKP AINSIPMVER
0701: PASVVSIPGM NGDSRNMVDV KPVITEESND KSKVWKLTEV GEPSQCRSLR LPENMRVTKI SRLIFTNSGN AILALASNAI HLLWKWQRND RNATGKATAS
0801: LPPQQWQPAS GILMTNDVAE TNPEEAVPCF ALSKNDSYVM SASGGKISLF NMMTFKTMAT FMPPPPAATF LAFHPQDNNI IAIGMDDSTI QIYNVRVDEV
0901: KSKLKGHSKR ITGLAFSNVL NVLVSSGADA QLCVWNTDGW EKQKSKVLQI PQGRSTSSLS DTRVQFHQDQ VHFLVVHETQ LAIYETTKLE CMKQWPVRES
1001: AAPITHATFS CDSQLIYTSF MDATICVFSS ANLRLRCRVN PSAYLPASLS NSNVHPLVIA AHPQESNMFA VGLSDGGVHI FEPLESEGKW GVAPPPENGS
1101: ASAVTATPSV GASASDQPQR
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAEGF PPLGAHGPFQ PTPSPVPTPL AGWMSSPSSV PHPAVSGGPI ALGAPSIQAA LKHPRTPPSN SAVDYPSGDS
0301: DHVSKRTRPM GISDEVSLGV NMLPMTFPGQ AHGHNQTFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDIAF STPNKQLCVT TCGDDKTIKV WDAATGVKRY
0501: TFEGHEAPVY SICPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYEAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDTIQ LLTAIDADGG LQASPRIRFN KEGSLLAVSA NDNMIKVMAN SDGLRLLHTV ENLSSESSKP AINSIPMVER
0701: PASVVSIPGM NGDSRNMVDV KPVITEESND KSKVWKLTEV GEPSQCRSLR LPENMRVTKI SRLIFTNSGN AILALASNAI HLLWKWQRND RNATGKATAS
0801: LPPQQWQPAS GILMTNDVAE TNPEEAVPCF ALSKNDSYVM SASGGKISLF NMMTFKTMAT FMPPPPAATF LAFHPQDNNI IAIGMDDSTI QIYNVRVDEV
0901: KSKLKGHSKR ITGLAFSNVL NVLVSSGADA QLCVWNTDGW EKQKSKVLQI PQGRSTSSLS DTRVQFHQDQ VHFLVVHETQ LAIYETTKLE CMKQWPVRES
1001: AAPITHATFS CDSQLIYTSF MDATICVFSS ANLRLRCRVN PSAYLPASLS NSNVHPLVIA AHPQESNMFA VGLSDGGVHI FEPLESEGKW GVAPPPENGS
1101: ASAVTATPSV GASASDQPQR
Arabidopsis Description
TPR1Topless-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV90]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.