CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95038	Canola	cytosol	2.73	1.6
CDX93542	Canola	cytosol	2.73	1.56
CDY35211	Canola	plastid	2.83	1.47
CDY65572	Canola	plastid	2.53	1.32
CDX91798	Canola	cytosol	0.4	0.79
AT4G33200.4	Thale cress	cytosol	1.11	0.72
CDY05734	Canola	cytosol	1.11	0.7
CDX72393	Canola	cytosol	1.01	0.66
CDX98274	Canola	nucleus	0.81	0.64
CDY69853	Canola	endoplasmic reticulum	0.3	0.62
CDY46128	Canola	cytosol	0.91	0.6
CDX68955	Canola	cytosol	0.3	0.58
CDX67724	Canola	cytosol	0.71	0.57
CDY17154	Canola	cytosol	0.91	0.49
KRH52257	Soybean	cytosol	0.71	0.46
KRH61584	Soybean	cytosol	0.71	0.46
VIT_04s0008g01990.t01	Wine grape	cytosol	0.71	0.46
Solyc08g061520.2.1	Tomato	cytosol	0.2	0.43
CDX75338	Canola	cytosol	0.71	0.42
CDY52239	Canola	cytosol	0.51	0.42
CDY28777	Canola	cytosol	0.51	0.42
CDY18321	Canola	cytosol	0.51	0.41
CDY31130	Canola	cytosol, mitochondrion	0.61	0.39
CDX70927	Canola	cytosol	0.61	0.39
CDY51846	Canola	cytosol	0.61	0.38
CDY19473	Canola	cytosol	0.61	0.34
CDY14319	Canola	cytosol, plastid	0.4	0.33
HORVU6Hr1G081340.4	Barley	cytosol	0.51	0.33
KRH15597	Soybean	cytosol	0.51	0.33
GSMUA_Achr3P07960_001	Banana	cytosol	0.51	0.31
CDY69448	Canola	extracellular, golgi, mitochondrion	0.1	0.3
Solyc08g061500.1.1	Tomato	cytosol	0.3	0.29
CDX86626	Canola	cytosol	0.51	0.29
CDY15512	Canola	cytosol	0.51	0.28
TraesCS6B01G367000.1	Wheat	cytosol	0.4	0.27
TraesCS6D01G316500.1	Wheat	cytosol	0.4	0.27
TraesCS6A01G336500.1	Wheat	cytosol	0.4	0.27
CDY36068	Canola	cytosol, mitochondrion	0.3	0.26
CDY21744	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	0.4	0.26
EES05882	Sorghum	cytosol	0.4	0.26
Zm00001d052110_P011	Maize	cytosol	0.4	0.26
CDY31978	Canola	cytosol	0.4	0.26
CDY45087	Canola	cytosol	0.4	0.26
CDX82270	Canola	cytosol	0.3	0.25
Os10t0395100-01	Rice	cytosol	0.1	0.21
CDX81833	Canola	cytosol	0.3	0.2
Zm00001d014241_P001	Maize	mitochondrion	0.1	0.2
Zm00001d014239_P001	Maize	cytosol	0.1	0.2
OQU91854	Sorghum	cytosol	0.3	0.2
CDX94736	Canola	cytosol	0.3	0.2
CDY22325	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	0.3	0.19
CDX84695	Canola	cytosol	0.3	0.17
CDY24591	Canola	cytosol, plastid	0.2	0.17
Os10t0339400-01	Rice	cytosol	0.1	0.14
Os02t0777700-00	Rice	cytosol	0.1	0.14
CDY64313	Canola	cytosol	0.2	0.13
CDX95235	Canola	cytosol	0.2	0.13
CDY25361	Canola	cytosol	0.2	0.13
CDX79446	Canola	cytosol	0.2	0.13
CDX84752	Canola	cytosol	0.2	0.13
CDY29324	Canola	cytosol	0.1	0.09
CDY42506	Canola	cytosol, plastid	0.1	0.09
CDY22791	Canola	cytosol, plastid	0.1	0.09
CDX88973	Canola	cytosol	0.1	0.09
CDY53932	Canola	cytosol, plastid	0.1	0.08
CDY00546	Canola	cytosol	0.1	0.08
CDY39766	Canola	cytosol	0.1	0.07
CDY03315	Canola	cytosol	0.1	0.07
CDY32922	Canola	cytosol	0.1	0.07
CDY32531	Canola	endoplasmic reticulum	0.1	0.07
CDX79520	Canola	endoplasmic reticulum	0.1	0.07
CDY10075	Canola	endoplasmic reticulum	0.1	0.07
Os10t0395150-00	Rice	plasma membrane	0.0	0.0
CDX92461	Canola	cytosol	0.0	0.0
CDY72648	Canola	cytosol	0.0	0.0
CDY71471	Canola	cytosol	0.0	0.0
CDY16536	Canola	cytosol	0.0	0.0
CDY66597	Canola	cytosol	0.0	0.0
CDY65579	Canola	endoplasmic reticulum	0.0	0.0
CDY42350	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlants:CDX72394	ProteinID:CDX72394	ProteinID:CDX72394.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00099887001	InterPro:IPR001810
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF12937	PFscan:PS50181	PANTHER:PTHR44842
SMART:SM00256	SMART:SM00367	SUPFAM:SSF52058	SUPFAM:SSF81383	UniParc:UPI0004EF0456	SEG:seg

Description

BnaC07g44160D

Coordinates

chrLK031796:-:1028714..1033851

Molecular Weight (calculated)

108802.0 Da

IEP (calculated)

4.585

GRAVY (calculated)

0.020

Length

989 amino acids

Sequence
(BLAST)

001: MRIWCFDCFT DEEEEGRLKQ SAMDNNNNNN NDDVDLDLNQ TELGVSEDER WPMCEEMMRA ATEEEEEDGT ELEQLWSSEI RSHPHLVLQG ESSNAAAAAA
101: VGEDCTMEEA DHDSYHKRAK VYSGLAESRS ASGVSSDAGS SVERTVSFGV ASSSRTDVDM FCQNFILNYS RKDGKKDEGD DNGSSESEDF EVHIDLTDDL
201: LHMVFSFLNH IDLCRSAMVC RQWRVASSHE DFWKALNFEN MRISIEQFED MCLRYPNATE VNVYGTPSVN ALAMKAATTL RNLEVLTVGK GHISENFFQA
301: LGECNMLRSV TVNEAILGNG AQEIHLSHDR LRELKITKCR VMRLSIRCPQ LRSLSLKRSN MSQAMLNCPL LQLLDIASCH KLLDAAIRSA AISCPQLESL
401: DVSNCSCVSD ETLREIAQAC ASLHILNASY CPNISLESVH LPMLTVLKLH SCEGITSASM TWIANSPALE VLELDNCNLL TSVVLHLSRL QSISLVHCRK
501: FTELNLQSVM LSSITISNCP ALRRITITSN SLRRLALQKQ ENLTTLVLQC QSLQEVDLSD CESLSNAVCE IFSDDGGCPI LKSLILDNCE SLTEVRFSNS
601: SLASLSLVGC RAVTSLELKC PRIEQICLDG CDHLETALFQ PVALRSLNLG ICPKLSVLNI EAPYMVSLEL KGCGVLSEAS IICPLLTSLD ASFCGQLRDD
701: CLSATTSSCP LIESLVLMSC PSIGSDGLSS LNGLPNLTVL DLSYTFLMNL EPVFKSCIRL KVLKLQACKY LTDSSLEPLY KEGALPALEE LDLSYGTLCQ
801: TAIDDLLACC THLTHLSLNG CVNMHDLDWG STNVQPFDYF GVYSSGETTR EPAEAANRLL QNLNCVGCPN IRKVLILPAA RFYHLSTLNL SLSVNLKEVD
901: LACSNLVLLN LSNCCSLEVL KLGCPRLASL FLQSCNMDEA GVEAAISRCC SLETLDLRFC SKISSVSMAR FRAVCPSLKR VFSSPNLAD

Best Arabidopsis Sequence Match ( AT4G33210.1 )
(BLAST)

001: MRIWCFSCFT DEDEDEEDDN GGRVKKQSLA TAMDNSNGDG DFVNFGENER APRVPRWRLR LCAEESEAAW AELDRFWTSE IPLNQLVQGE SSSNVVAEAE
101: DCTMEEADHD SYHKRAKVYS GLAECRSVSG VSSDAGNSVS SVERTVSFGI ASSSRTDTDM FCQNFILNYN RKDGKKDDGD DNGSSDTEDF EVHIDLTDDL
201: LHMVFSFLNH VDLCRSAMVC RQWRVASAHE DFWRVLNFEN IRISMEQFEN MCSRYPNATE VNVYGAPAVN ALAMKAATTL RNLEVLTIGK GHISESFFQA
301: LGECNMLRSV TVSDAILGNG AQEIHLSHDR LRELKITKCR VMRLSIRCPQ LRSLSLKRSN MSQAMLNCPL LQLLDIASCH KLLDAAIRSA AISCPQLESL
401: DVSNCSCVSD ETLREIAQAC ANLHILNASY CPNISLESVH LPMLTVLKLH SCEGITSASM TWIANSPALE VLELDNCNLL TTVSLHLSRL QSISLVHCRK
501: FTDLNLQSIM LSSITVSNCP ALRRITITSN ALRRLALQKQ ENLTTLVLQC HSLQEVDLSD CESLSNSVCK IFSDDGGCPM LKSLILDNCE SLTAVRFCNS
601: SLASLSLVGC RAVTSLELKC PRIEQICLDG CDHLETAFFQ PVALRSLNLG ICPKLSVLNI EAPYMVSLEL KGCGVLSEAS IMCPLLTSLD ASFCSQLRDD
701: CLSATTASCP LIESLVLMSC PSIGSDGLSS LNGLPNLTVL DLSYTFLMNL EPVFKSCIQL KVLKLQACKY LTDSSLEPLY KEGALPALEE LDLSYGTLCQ
801: TAIDDLLACC THLTHLSLNG CVNMHDLDWG STSVHLFDYF GVYSSSDNTQ EPAETANRLL QNLNCVGCPN IRKVLIPPAA RFYHLSTLNL SLSVNLKEVD
901: LTCSNLVLLN LSNCCSLEVL KLGCPRLASL FLQSCNMDEA GVEAAISGCS SLETLDLRFC PKISSVSMSK FRTVCPSLKR VFSSPNLLQD

Arabidopsis Description

FBL15SLOMO [Source:UniProtKB/TrEMBL;Acc:A0A178V148]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.