Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • extracellular 4
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 4
  • golgi 4
  • cytosol 3
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:cytosol
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70091
CDX81833
CDX93536
CDX95032
CDX98935
CDY04993
CDY14078
CDY21744
CDY32134

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G17580.1 CDX93536 AT1G08800.1 23995081
AT1G17580.1 CDX95032 AT1G08800.1 23995081
AT1G17580.1 CDY32134 AT1G08800.1 23995081
AT1G17580.1 CDX81833 AT1G17580.1 18429938
AT1G17580.1 CDY21744 AT1G17580.1 18429938
AT1G17580.1 CDX70091 AT5G06560.1 23995081
AT1G17580.1 CDX98935 AT5G06560.1 23995081
AT1G17580.1 CDY04993 AT5G06560.1 23995081
AT1G17580.1 CDY14078 AT5G06560.1 23995081
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY21744 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 98.16 94.85
AT1G17580.1 Thale cress cytosol 88.87 85.66
Os01t0713900-01 Rice cytosol 19.32 76.08
CDX91798 Canola cytosol 26.01 75.6
Os05t0537200-01 Rice cytosol, plasma membrane 18.57 73.12
CDY72648 Canola cytosol 13.17 70.96
Zm00001d038844_P001 Maize cytosol 30.03 69.84
VIT_09s0002g01910.t01 Wine grape cytosol, endoplasmic reticulum, nucleus 74.2 69.77
GSMUA_Achr8P26250_001 Banana cytosol 72.35 69.24
GSMUA_AchrUn_... Banana cytosol 41.77 68.69
GSMUA_Achr5P09720_001 Banana cytosol 72.76 68.2
Zm00001d044303_P003 Maize plasma membrane 70.92 67.95
CDY66597 Canola cytosol 70.58 67.94
EES03165 Sorghum cytosol 70.72 67.76
HORVU3Hr1G050290.1 Barley cytosol 70.51 67.56
TraesCS3A01G209500.1 Wheat cytosol 70.24 67.52
CDX70927 Canola cytosol 71.6 67.42
Os03t0686300-00 Rice plasma membrane 71.13 67.36
TraesCS3B01G239700.1 Wheat cytosol, golgi 70.1 67.17
TraesCS3D01G212400.3 Wheat cytosol 70.03 67.1
CDY45087 Canola cytosol 70.85 67.01
CDY51846 Canola cytosol 71.6 66.35
CDX68955 Canola cytosol 23.28 65.58
CDX95235 Canola cytosol 66.69 63.61
CDY42350 Canola cytosol 65.12 63.47
CDY31130 Canola cytosol, mitochondrion 66.08 62.86
CDY32922 Canola cytosol 60.2 58.53
CDX94736 Canola cytosol 60.48 57.98
CDY64313 Canola cytosol 59.73 57.53
CDY22325 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 60.41 57.47
CDY32531 Canola endoplasmic reticulum 58.63 56.85
CDY10075 Canola endoplasmic reticulum 58.63 56.7
CDX79446 Canola cytosol 59.86 56.33
CDX84752 Canola cytosol 59.93 56.25
CDX88973 Canola cytosol 44.91 56.0
CDY39766 Canola cytosol 55.02 54.83
CDY03315 Canola cytosol 55.02 54.79
CDY00546 Canola cytosol 44.85 54.7
CDX93542 Canola cytosol 64.03 54.19
CDX67724 Canola cytosol 44.51 53.22
CDX95038 Canola cytosol 61.23 53.01
CDX98274 Canola nucleus 44.57 52.58
CDY31978 Canola cytosol 54.33 51.76
CDY46128 Canola cytosol 52.56 51.27
CDX72393 Canola cytosol 52.56 51.13
CDY05734 Canola cytosol 54.2 50.32
CDX79520 Canola endoplasmic reticulum 49.9 48.35
CDX75338 Canola cytosol 54.27 47.98
CDX84695 Canola cytosol 56.45 47.69
CDY15512 Canola cytosol 56.52 47.18
CDX86626 Canola cytosol 56.18 47.08
CDY19473 Canola cytosol 55.43 46.37
CDY65572 Canola plastid 59.73 46.03
CDY35211 Canola plastid 59.86 46.01
CDY17154 Canola cytosol 54.74 43.87
CDY69448 Canola extracellular, golgi, mitochondrion 9.76 43.33
CDY71471 Canola cytosol 14.33 43.3
CDY16536 Canola cytosol 12.35 40.31
CDX92461 Canola cytosol 12.7 40.17
CDY65579 Canola endoplasmic reticulum 30.79 39.95
HORVU1Hr1G080240.9 Barley cytosol 57.82 39.45
TraesCS1B01G375000.1 Wheat cytosol 57.54 39.36
CDY69853 Canola endoplasmic reticulum 12.97 39.34
TraesCS1D01G363400.1 Wheat cytosol 57.41 39.13
Os05t0537300-01 Rice cytosol, mitochondrion, peroxisome 9.56 39.0
OQU78360 Sorghum cytosol 57.2 38.98
TraesCS1A01G358500.1 Wheat cytosol 54.95 38.65
TraesCS3A01G248800.7 Wheat cytosol 61.37 37.6
TraesCS3D01G248700.2 Wheat cytosol 61.02 37.48
TraesCS3B01G277500.1 Wheat cytosol 60.96 37.4
OQU87414 Sorghum cytosol 60.75 37.29
Zm00001d011713_P003 Maize endoplasmic reticulum 57.47 35.6
CDY42506 Canola cytosol, plastid 27.24 34.73
CDY22791 Canola cytosol, plastid 27.17 34.4
Zm00001d043667_P003 Maize endoplasmic reticulum 46.76 34.27
CDY29324 Canola cytosol 26.83 34.23
CDY24591 Canola cytosol, plastid 26.83 33.91
CDY36068 Canola cytosol, mitochondrion 26.14 33.8
CDY52239 Canola cytosol 27.24 33.33
CDY28777 Canola cytosol 27.17 33.19
CDX82270 Canola cytosol 27.1 33.19
CDY53932 Canola cytosol, plastid 26.69 33.11
CDY18321 Canola cytosol 26.62 32.31
CDY14319 Canola cytosol, plastid 26.55 32.28
Zm00001d038845_P002 Maize nucleus 27.17 28.15
HORVU3Hr1G067400.2 Barley cytosol 34.47 26.9
CDY25361 Canola cytosol 26.89 25.44
CDX72394 Canola nucleus 0.2 0.3
Protein Annotations
Gene3D:1.10.10.820Gene3D:1.20.120.720Gene3D:1.20.5.190Gene3D:1.20.58.530MapMan:20.2.4.1Gene3D:3.30.70.3240
Gene3D:3.40.850.10GO:A0A078D3F0EnsemblPlants:CDX81833ProteinID:CDX81833ProteinID:CDX81833.1ncoils:Coil
InterPro:Dilute_domGO:GO:0000166GO:GO:0003674GO:GO:0003774GO:GO:0003777GO:GO:0003824
GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005856GO:GO:0007015GO:GO:0007018GO:GO:0008017GO:GO:0008150GO:GO:0009987
GO:GO:0016043GO:GO:0016459GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00136777001InterPro:IPR000048InterPro:IPR001609
InterPro:IPR002710InterPro:IPR004009InterPro:IPR036961InterPro:IQ_motif_EF-hand-BSInterPro:Kinesin_motor_dom_sfInterPro:MYSc_Myo11
InterPro:MyosinXI_CBDInterPro:Myosin_NInterPro:Myosin_head_motor_domInterPro:P-loop_NTPasePFAM:PF00063PFAM:PF00612
PFAM:PF01843PFAM:PF02736PRINTS:PR00193PFscan:PS50096PFscan:PS51126PFscan:PS51456
PFscan:PS51844PANTHER:PTHR13140PANTHER:PTHR13140:SF510SMART:SM00015SMART:SM00242SMART:SM01132
SUPFAM:SSF52540SignalP:SignalP-noTMUniParc:UPI0004EDCA70SEG:seg::
Description
BnaC08g37680D
Coordinates
chrLK031826:+:1035344..1044202
Molecular Weight (calculated)
166715.0 Da
IEP (calculated)
8.779
GRAVY (calculated)
-0.341
Length
1465 amino acids
Sequence
(BLAST)
0001: MLVLLNVMHW MQAAPVIIVG SHVWVEDPHL AWIDGQVTRI DGQNIHVRTN KGKTVVTSVY FPKDTEASPG GVDDMTKLSY LHEPGVLQNL ETRYELNHIY
0101: TYTGNILIAV NPFQRLPHLY AADMMEQYKG IGLGELSPHV FAIGDAAYRA MINEGKSNSI LVSGESGAGK TETTKMLMRY LAFLGGRSGV EGRTVEQQVL
0201: ESNPVLEAFG NAKTLRNNNS SRFGKFVEIQ FDKHGRISGA AIRTYLLERS RVCQISDPER NYHCFYLLCA APPEDIKKYK LGNPQSFHYL NQSSCYELDG
0301: VDDASEYLET RRAMDVVGIS NEEQEAIFRV VAAILHLGNI DFGLGEEIDS SVIKDENSRF HLNLAAELLM CNAKSLEDAL IRRVMVTPEE IITKTLDPDN
0401: AIASRDTLAK TIYSHLFDWI VNKINTSIGQ DPRSKSIIGV LDIYGFESFK CNSFEQFCIN FTNEKLQQHF NQHVFKMEQE EYTKEEIDWS YIEFIDNQDV
0501: LDLIEKKPGG IISLLDEACM FPKSTHETFS NKLFQTFKGH ERFSKPKLSQ TDFTISHYAG EVTYQSNHFI DKNKDYIVAE HQALFTASNC SFVAGLFHAL
0601: HEDSSRSSKF SSIGSRFKQQ LHSLMETLNG TEPHYIRCIK PNNILKPGIF ENFNVIHQLR CGGVLEAIRI SCAGYPTRLA FYDFLERFGL LAPEVLDGNY
0701: DDEVACQMIL DKKGLRDYQV GKTKIFLRAG QMAELDARRA EVLGNAARVI QRQFRTWIAR KKFRSIRNAA IVLQSFLRGE IARTVHKKLI IEAAALRFQK
0801: NFRRYIARKS FVTNRSAAVV LQTGFKGMIA RNEFRLRRQT KAAIVIQAHW RGQRAYAYYI RLKKAAIVTQ CAWRCRLARR ELRMLKLAAR ETGALKDAKD
0901: KLEKRVEELT WRLQLEKRLR TDLEEAKVQE VAKLQEALHT MRSQLKEATV MALKEQEAAR MAIEEASSVK KEPVVVEDTA KIKSLSNEIE KLKGMLSSET
1001: RKADEAKQAH RSALVQNEEL SKRLDEAGRK INQLQDSVQR FQEKVSNLES ENKVLRQQSL ALSPASRALA LRPKTTIIQM QRTPERFTFS NGETKQIQEP
1101: ETEDRPQKSL NQKQLENQEL LLKSISEDIG FSEGKPVAAC LIYKCLIHWR SFEVERTNIF NRIIETIASA IEMQENDDVL CYWLSNSATL LMLLERTLKA
1201: GNIPPSRHRA MSTSLFGRVS QSFIGSPQSV GFPFMNGRAI GGGLDELRQV EAKYPALLFK QQLTAYLEKI YGVIRDRMKR EIAPLLAVCI QAPRQPRSGL
1301: IKGRSHNNSE AQKALSAHWQ SIVTCLNGHL RTMRANYVPS LLISKVFGQI FSFINVQLFN SLVLRRECCS FSNGEYVKTG LAELEKWCHD ATEEFAGSAW
1401: DELKHIRQAV GFLVIHQKPK KSLHEITTEL CPVLTVQQLY RISTMYSDDK YGTHSVSSEA SEYLL
Best Arabidopsis Sequence Match ( AT1G17580.1 )
(BLAST)
0001: MAAPVIIVGS HVWVEDPHLA WIDGEVTRID GINVHVKTKK GKTVVTNVYF PKDTEAPSGG VDDMTKLSYL HEPGVLRNLE TRYELNEIYT YTGNILIAVN
0101: PFQRLPHIYE TDMMEQYKGI ALGELSPHVF AIGDAAYRAM INEGKNNSIL VSGESGAGKT ETTKMLMRYL AFLGGRSGVE GRTVEQQVLE SNPVLEAFGN
0201: AKTLRNNNSS RFGKFVEIQF DKNGRISGAA IRTYLLERSR VCQISDPERN YHCFYLLCAA PPEDIKKYKL ENPHKFHYLN QSSCYKLDGV DDASEYLETR
0301: RAMDVVGISN EEQEAIFRVV AAILHLGNID FGKGEEIDSS VIKDKDSRSH LNMAAELLMC NAQSLEDALI RRVMVTPEEI ITRTLDPDNA IASRDTLAKT
0401: IYSHLFDWIV NKINTSIGQD PRSKSIIGVL DIYGFESFKC NSFEQFCINF TNEKLQQHFN QHVFKMEQEE YTKEEIAWSY IEFIDNQDVL ELIEKKPGGI
0501: ISLLDEACMF PKSTHETFSQ KLFQTFKEHE RFAKPKLSRT DFTISHYAGE VTYQSNHFID KNKDYIVAEH QALFTASNCK FVAGLFHALH EDSSRSSKFS
0601: SIGSRFKQQL HSLMESLNGT EPHYIRCIKP NNVLKPGIFE NFNVIHQLRC GGVLEAIRIS CAGYPTRLAF YDFLDRFGLL APEVLEGNYD DKVACQMILD
0701: KKSLTDYQIG KTKIFLRAGQ MAELDARRAE VLGNAARVIQ RQFRTCMARK NYRSIRNAAI VLQSFLRGEI ARAVHKKLRI EAAALRVQKN FRRYVDRKSF
0801: VTTRSSTIVL QTGLRAMIAR SEFRLRRQRK AAIVLQAHWR GRQAFSYYTR LQKAAIVTQC AWRCRLARRE LRMLKMAARD TGALKDAKNK LEQRVEELSL
0901: RLHLEKRLRT DLEEAKVQEV AKLQEALHTM RLQLKETTAM VVKEQEAARV AIEEASSVNK EPVVVEDTEK IDSLSNEIDR LKGLLSSETH KADEAQHAYQ
1001: SALVQNEELC KKLEEAGRKI DQLQDSVQRF QEKVFSLESE NKVLRQQTLT ISPTTRALAL RPKTTIIQRT PEKDTFSNGE TTQLQEPETE DRPQKSLNQK
1101: QQENQELLLK SISEDIGFSE GKPVAACLIY KCLIHWRSFE VERTSIFNRI IETIASAIEM QENSDVLCYW LSNSATLLMF LQRTLKAGAT GSITTPRRRG
1201: MPSSLFGRVS QSFRGSPQSA GFPFMTGRAI GGGLDELRQV EAKYPALLFK QQLTAFLEKI YGMIRDKMKK EISPLLASCI QVPRTPRSGL VKGRSQNTQN
1301: NVVAPKPMIA HWQNIVTCLN GHLRTMRANY VPSLLISKVF GQIFSFINVQ LFNSLLLRRE CCSFSNGEYV KTGLAELEKW CHDATEEFVG SAWDELKHIR
1401: QAVGFLVIHQ KPKKSLKEIT TELCPVLSIQ QLYRISTMYW DDKYGTHSVS TEVIATMRAE VSDVSKSAIS NSFLLDDDSS IPFSLDDISK SMQNVEVAEV
1501: DPPPLIRQNS NFMFLLERSD
Arabidopsis Description
XI-1Myosin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q39160]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.