CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70091
CDX81833
CDX93536
CDX95032
CDX98935
CDY04993
CDY14078
CDY21744
CDY32134

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17580.1	CDX93536	AT1G08800.1	23995081
AT1G17580.1	CDX95032	AT1G08800.1	23995081
AT1G17580.1	CDY32134	AT1G08800.1	23995081
AT1G17580.1	CDX81833	AT1G17580.1	18429938
AT1G17580.1	CDY21744	AT1G17580.1	18429938
AT1G17580.1	CDX70091	AT5G06560.1	23995081
AT1G17580.1	CDX98935	AT5G06560.1	23995081
AT1G17580.1	CDY04993	AT5G06560.1	23995081
AT1G17580.1	CDY14078	AT5G06560.1	23995081

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030993.1-P	Field mustard	cytosol	99.54	99.93
CDX81833	Canola	cytosol	94.85	98.16
AT1G17580.1	Thale cress	cytosol	88.79	88.55
Os01t0713900-01	Rice	cytosol	18.6	75.81
CDX91798	Canola	cytosol	25.0	75.2
Os05t0537200-01	Rice	cytosol, plasma membrane	17.94	73.12
VIT_09s0002g01910.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	74.01	72.02
GSMUA_Achr8P26250_001	Banana	cytosol	72.23	71.52
CDY72648	Canola	cytosol	12.66	70.59
GSMUA_Achr5P09720_001	Banana	cytosol	72.63	70.44
Zm00001d044303_P003	Maize	plasma membrane	70.84	70.24
EES03165	Sorghum	cytosol	70.78	70.18
CDY66597	Canola	cytosol	70.45	70.17
Zm00001d038844_P001	Maize	cytosol	29.09	70.0
TraesCS3A01G209500.1	Wheat	cytosol	70.12	69.75
HORVU3Hr1G050290.1	Barley	cytosol	70.32	69.72
CDX70927	Canola	cytosol	71.5	69.67
Os03t0686300-00	Rice	plasma membrane	70.91	69.49
TraesCS3B01G239700.1	Wheat	cytosol, golgi	69.99	69.39
TraesCS3D01G212400.3	Wheat	cytosol	69.92	69.33
CDY45087	Canola	cytosol	70.71	69.21
GSMUA_AchrUn_...	Banana	cytosol	40.44	68.8
CDY51846	Canola	cytosol	71.5	68.56
CDX95235	Canola	cytosol	66.49	65.62
CDY42350	Canola	cytosol	64.97	65.54
CDX68955	Canola	cytosol	22.43	65.38
CDY31130	Canola	cytosol, mitochondrion	66.09	65.06
CDY32922	Canola	cytosol	59.89	60.25
CDX94736	Canola	cytosol	60.16	59.69
CDY64313	Canola	cytosol	59.43	59.24
CDY22325	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	60.09	59.16
CDY32531	Canola	endoplasmic reticulum	58.18	58.37
CDY10075	Canola	endoplasmic reticulum	58.18	58.22
CDX84752	Canola	cytosol	59.63	57.91
CDX79446	Canola	cytosol	59.37	57.8
CDY03315	Canola	cytosol	54.55	56.22
CDX93542	Canola	cytosol	64.18	56.21
CDY39766	Canola	cytosol	54.49	56.19
CDX88973	Canola	cytosol	43.34	55.91
CDX95038	Canola	cytosol	61.41	55.02
CDY00546	Canola	cytosol	43.4	54.79
CDX67724	Canola	cytosol	43.01	53.22
CDY31978	Canola	cytosol	53.76	52.99
CDY46128	Canola	cytosol	52.31	52.8
CDX72393	Canola	cytosol	52.24	52.59
CDX98274	Canola	nucleus	43.07	52.58
CDY05734	Canola	cytosol	53.63	51.52
CDY69448	Canola	extracellular, golgi, mitochondrion	10.82	49.7
CDX75338	Canola	cytosol	53.96	49.37
CDX79520	Canola	endoplasmic reticulum	49.14	49.27
CDX84695	Canola	cytosol	55.41	48.44
Os05t0537300-01	Rice	cytosol, mitochondrion, peroxisome	11.41	48.19
CDY15512	Canola	cytosol	55.74	48.15
CDX86626	Canola	cytosol	55.41	48.05
CDY19473	Canola	cytosol	54.75	47.4
CDY65572	Canola	plastid	59.43	47.4
CDY35211	Canola	plastid	59.56	47.38
CDY16536	Canola	cytosol	13.52	45.66
CDX92461	Canola	cytosol	13.92	45.57
CDY17154	Canola	cytosol	54.09	44.86
CDY71471	Canola	cytosol	13.92	43.51
CDY65579	Canola	endoplasmic reticulum	31.93	42.87
HORVU1Hr1G080240.9	Barley	cytosol	57.92	40.89
TraesCS1B01G375000.1	Wheat	cytosol	57.65	40.8
TraesCS1D01G363400.1	Wheat	cytosol	57.52	40.58
TraesCS1A01G358500.1	Wheat	cytosol	55.01	40.04
CDY69853	Canola	endoplasmic reticulum	12.66	39.75
OQU78360	Sorghum	cytosol	55.21	38.93
TraesCS3A01G248800.7	Wheat	cytosol	61.15	38.77
TraesCS3B01G277500.1	Wheat	cytosol	60.69	38.53
TraesCS3D01G248700.2	Wheat	cytosol	60.55	38.49
OQU87414	Sorghum	cytosol	60.49	38.42
Zm00001d011713_P003	Maize	endoplasmic reticulum	57.12	36.62
CDY42506	Canola	cytosol, plastid	26.25	34.64
CDY22791	Canola	cytosol, plastid	26.19	34.31
CDY29324	Canola	cytosol	25.92	34.23
Zm00001d043667_P003	Maize	endoplasmic reticulum	45.12	34.22
CDY24591	Canola	cytosol, plastid	25.92	33.91
CDY36068	Canola	cytosol, mitochondrion	25.26	33.8
CDY52239	Canola	cytosol	26.39	33.42
CDY28777	Canola	cytosol	26.32	33.28
CDX82270	Canola	cytosol	26.12	33.11
CDY53932	Canola	cytosol, plastid	25.79	33.11
CDY18321	Canola	cytosol	25.79	32.39
CDY14319	Canola	cytosol, plastid	25.73	32.37
Zm00001d038845_P002	Maize	nucleus	28.23	30.27
HORVU3Hr1G067400.2	Barley	cytosol	35.09	28.34
CDY25361	Canola	cytosol	25.92	25.37
CDX72394	Canola	nucleus	0.26	0.4

Protein Annotations

Gene3D:1.10.10.820	Gene3D:1.20.120.720	Gene3D:1.20.5.190	Gene3D:1.20.58.530	MapMan:20.2.4.1	Gene3D:3.30.70.3240
Gene3D:3.40.850.10	GO:A0A078G8L7	UniProt:A0A078G8L7	EnsemblPlants:CDY21744	ProteinID:CDY21744	ProteinID:CDY21744.1
ncoils:Coil	InterPro:Dilute_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003774	GO:GO:0003777
GO:GO:0003779	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0007015	GO:GO:0007018	GO:GO:0008017
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016459	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00016250001
InterPro:IPR000048	InterPro:IPR001609	InterPro:IPR002710	InterPro:IPR004009	InterPro:IPR036961	InterPro:IQ_motif_EF-hand-BS
InterPro:Kinesin_motor_dom_sf	InterPro:MYSc_Myo11	InterPro:MyosinXI_CBD	InterPro:Myosin_N	InterPro:Myosin_head_motor_dom	InterPro:P-loop_NTPase
PFAM:PF00063	PFAM:PF00612	PFAM:PF01843	PFAM:PF02736	PRINTS:PR00193	PFscan:PS50096
PFscan:PS51126	PFscan:PS51456	PFscan:PS51844	PANTHER:PTHR13140	PANTHER:PTHR13140:SF510	SMART:SM00015
SMART:SM00242	SMART:SM01132	SUPFAM:SSF52540	SignalP:SignalP-noTM	UniParc:UPI0004EE0D2A	SEG:seg

Description

BnaA09g44950DBnaA09g44950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8L7]

Coordinates

chrLK032123:-:479764..489334

Molecular Weight (calculated)

172462.0 Da

IEP (calculated)

8.357

GRAVY (calculated)

-0.346

Length

1516 amino acids

Sequence
(BLAST)

0001: MLMLLNVMQA APVIIVGSHV WVEDPHLAWI DGQVTRIDGQ NIHVRTKKGK TVVTSVYFPK DTEASPGGVD DMTKLSYLHE PGVLQNLETR YELNHIYTYT
0101: GNILIAVNPF QRLPHLYATD MMEQYKGIGL GELSPHVFAI GDAAYRAMIN EGKSNSILVS GESGAGKTET TKMLMRYLAF LGGRSGVEGR TVEQQVLESN
0201: PVLEAFGNAK TLRNNNSSRF GKFVEIQFDK HGRISGAAIR TYLLERSRVC QISDPERNYH CFYLLCAAPP EDIKKYKLGN PQSFHYLNQS SCYELDGVDD
0301: ASEYLETRRA MDVVGISNEE QEAIFRVVAA ILHLGNIDFG LGEEIDSSVI KDENSRFHLN LAAELLMCNA QSLEDALIRR VMVTPEEIIT KTLDPDNAIA
0401: SRDTLAKTIY SHLFDWIVNK INTSIGQDPR SKSIIGVLDI YGFESFKCNS FEQFCINFTN EKLQQHFNQH VFKMEQEEYT KEEIDWSYIE FIDNQDVLDL
0501: IEKKPGGIIS LLDEACMFPK STHETFSNKL FQTFKGHERF SKPKLSQTDF TISHYAGEVT YQSNHFIDKN KDYIVAEHQA LFTASNCSFV AGLFHALHED
0601: SSRSSKFSSI GSRFKQQLHS LMETLNGTEP HYIRCIKPNN ILKPGIFENF NVIHQLRCGG VLEAIRISCA GYPTRLAFYD FLERFGLLAP EVLDGNYDDE
0701: VACQMILDKK GLRDYQVGKT KIFLRAGQMA ELDARRAEVL GNAARVIQRQ FRTWIGRKKF RSIRNAAIVL QSFLRGEIAR TVHKKLIIEA AALRFQKNFR
0801: RYIARKSFVT NRSAAIVLQT GFKGMIARNE FRLRRQTKAA IVIQAHWRGQ RAYAYYIRLK KAAIVTQCAW RCRLARRELR MLKLAARETG ALKDAKDKLE
0901: KRVEELTWRL QLEKRLRTDL EEAKVQEVAK LQEALHTMRS QLKEATVMAL KEQEAARMAN EEASSVKKEP VVVEDTAKIK SLSNEIEKLK GILSSETHRA
1001: DEATQAYRSA LVQNEELSKR LDEAGKKINQ LQDSVQRFQE KVSNLESENK VLRQQSLALS PASRALALRP KTTIVQMQRT PERFNFSNGE TKQVQEPETE
1101: DRPQKSLNQK QLENQELLLK SISEDIGFSE GKPVAACLIY KCLIHWRSFE VERTNIFNRI IETIASAIEM QENDDVLCYW LSNSATLLML LERTLKAGNI
1201: PPSRHRAMST SLFGRVSQSF IGSPQSVGFP FMNGRAIGGG LDELRQVEAK YPALLFKQQL TAYLEKIYGV IRDRMKREIA PLLAVCIQAP RQPRSGLIKG
1301: RSHNNFEAQK ALSAHWQSIV TCLNGHLRTM RANYVPSLLI SKVFGQIFSF INVQLFNSLV LRRECCSFSN GEYVKTGLAE LEKWCHDATE EFAGSAWDEL
1401: KHIRQAVGFL VIHQKPKKSL DEITTELCPV LTVQQLYRIS TMYSDDKYGT HSVMASMRQT VSEDTNKSFL LDDDSSIPFS LEDISKSMPN VEVAEIDPPP
1501: LIRQNTSFMF LLERSD

Best Arabidopsis Sequence Match ( AT1G17580.1 )
(BLAST)

0001: MAAPVIIVGS HVWVEDPHLA WIDGEVTRID GINVHVKTKK GKTVVTNVYF PKDTEAPSGG VDDMTKLSYL HEPGVLRNLE TRYELNEIYT YTGNILIAVN
0101: PFQRLPHIYE TDMMEQYKGI ALGELSPHVF AIGDAAYRAM INEGKNNSIL VSGESGAGKT ETTKMLMRYL AFLGGRSGVE GRTVEQQVLE SNPVLEAFGN
0201: AKTLRNNNSS RFGKFVEIQF DKNGRISGAA IRTYLLERSR VCQISDPERN YHCFYLLCAA PPEDIKKYKL ENPHKFHYLN QSSCYKLDGV DDASEYLETR
0301: RAMDVVGISN EEQEAIFRVV AAILHLGNID FGKGEEIDSS VIKDKDSRSH LNMAAELLMC NAQSLEDALI RRVMVTPEEI ITRTLDPDNA IASRDTLAKT
0401: IYSHLFDWIV NKINTSIGQD PRSKSIIGVL DIYGFESFKC NSFEQFCINF TNEKLQQHFN QHVFKMEQEE YTKEEIAWSY IEFIDNQDVL ELIEKKPGGI
0501: ISLLDEACMF PKSTHETFSQ KLFQTFKEHE RFAKPKLSRT DFTISHYAGE VTYQSNHFID KNKDYIVAEH QALFTASNCK FVAGLFHALH EDSSRSSKFS
0601: SIGSRFKQQL HSLMESLNGT EPHYIRCIKP NNVLKPGIFE NFNVIHQLRC GGVLEAIRIS CAGYPTRLAF YDFLDRFGLL APEVLEGNYD DKVACQMILD
0701: KKSLTDYQIG KTKIFLRAGQ MAELDARRAE VLGNAARVIQ RQFRTCMARK NYRSIRNAAI VLQSFLRGEI ARAVHKKLRI EAAALRVQKN FRRYVDRKSF
0801: VTTRSSTIVL QTGLRAMIAR SEFRLRRQRK AAIVLQAHWR GRQAFSYYTR LQKAAIVTQC AWRCRLARRE LRMLKMAARD TGALKDAKNK LEQRVEELSL
0901: RLHLEKRLRT DLEEAKVQEV AKLQEALHTM RLQLKETTAM VVKEQEAARV AIEEASSVNK EPVVVEDTEK IDSLSNEIDR LKGLLSSETH KADEAQHAYQ
1001: SALVQNEELC KKLEEAGRKI DQLQDSVQRF QEKVFSLESE NKVLRQQTLT ISPTTRALAL RPKTTIIQRT PEKDTFSNGE TTQLQEPETE DRPQKSLNQK
1101: QQENQELLLK SISEDIGFSE GKPVAACLIY KCLIHWRSFE VERTSIFNRI IETIASAIEM QENSDVLCYW LSNSATLLMF LQRTLKAGAT GSITTPRRRG
1201: MPSSLFGRVS QSFRGSPQSA GFPFMTGRAI GGGLDELRQV EAKYPALLFK QQLTAFLEKI YGMIRDKMKK EISPLLASCI QVPRTPRSGL VKGRSQNTQN
1301: NVVAPKPMIA HWQNIVTCLN GHLRTMRANY VPSLLISKVF GQIFSFINVQ LFNSLLLRRE CCSFSNGEYV KTGLAELEKW CHDATEEFVG SAWDELKHIR
1401: QAVGFLVIHQ KPKKSLKEIT TELCPVLSIQ QLYRISTMYW DDKYGTHSVS TEVIATMRAE VSDVSKSAIS NSFLLDDDSS IPFSLDDISK SMQNVEVAEV
1501: DPPPLIRQNS NFMFLLERSD

Arabidopsis Description

XI-1Myosin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q39160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.