Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85545 | Canola | nucleus | 85.08 | 90.16 |
| Bra008689.1-P | Field mustard | nucleus | 74.03 | 70.31 |
| Bra039160.1-P | Field mustard | nucleus | 50.41 | 52.32 |
| Bra001034.1-P | Field mustard | nucleus | 48.3 | 47.96 |
| Solyc02g089030.1.1 | Tomato | nucleus | 2.94 | 35.21 |
| VIT_14s0068g00360.t01 | Wine grape | nucleus | 36.19 | 31.46 |
| Bra008136.1-P | Field mustard | nucleus | 33.84 | 28.69 |
| KRH01314 | Soybean | nucleus | 32.55 | 28.44 |
| KRH45061 | Soybean | nucleus | 32.08 | 28.06 |
| Bra031037.1-P | Field mustard | nucleus | 26.67 | 27.19 |
| KRH18379 | Soybean | nucleus | 30.79 | 26.6 |
| KRG93656 | Soybean | nucleus | 30.32 | 26.11 |
| PGSC0003DMT400003717 | Potato | nucleus | 27.73 | 24.97 |
| TraesCS2A01G176000.1 | Wheat | nucleus | 27.73 | 24.63 |
| HORVU2Hr1G032710.2 | Barley | cytosol | 27.61 | 24.61 |
| GSMUA_Achr7P26670_001 | Banana | nucleus | 19.86 | 24.39 |
| TraesCS2D01G183400.1 | Wheat | nucleus | 27.26 | 24.32 |
| TraesCS2B01G202300.1 | Wheat | nucleus | 26.91 | 24.11 |
| GSMUA_Achr4P32860_001 | Banana | nucleus | 27.5 | 23.95 |
| Os07t0603300-01 | Rice | nucleus | 26.44 | 23.94 |
| GSMUA_Achr4P07300_001 | Banana | cytosol | 24.68 | 23.18 |
| TraesCS2B01G281200.2 | Wheat | cytosol | 29.02 | 23.17 |
| Solyc02g089050.2.1 | Tomato | nucleus | 19.98 | 23.16 |
| Os03t0418700-02 | Rice | nucleus | 24.91 | 22.89 |
| Os07t0109400-01 | Rice | nucleus | 29.14 | 22.77 |
| KXG36646 | Sorghum | nucleus | 25.62 | 22.73 |
| TraesCS2D01G262900.1 | Wheat | cytosol | 28.67 | 22.68 |
| Zm00001d019700_P006 | Maize | nucleus | 28.32 | 22.63 |
| TraesCS2A01G261000.1 | Wheat | cytosol | 28.44 | 22.55 |
| HORVU2Hr1G063820.1 | Barley | cytosol | 28.44 | 22.53 |
| Zm00001d006828_P001 | Maize | nucleus | 25.26 | 22.51 |
| EER98557 | Sorghum | nucleus | 28.67 | 22.51 |
| Zm00001d022072_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 24.79 | 22.19 |
| Zm00001d005297_P006 | Maize | nucleus | 28.2 | 21.82 |
| GSMUA_Achr4P14410_001 | Banana | nucleus | 21.5 | 21.08 |
| KXG39125 | Sorghum | plastid | 22.21 | 20.7 |
Protein Annotations
| EnsemblPlants:Bra023526.1 | EnsemblPlants:Bra023526.1-P | EnsemblPlantsGene:Bra023526 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016049 | GO:GO:0040007 | GO:GO:0051513 | InterPro:DUF4378 | InterPro:LNG1/2 |
| ncoils:Coil | PANTHER:PTHR31680 | PANTHER:PTHR31680:SF4 | PFAM:PF14309 | SEG:seg | UniParc:UPI0002543657 |
| UniProt:M4E423 | MapMan:13.4.1.2.2 | : | : | : | : |
Description
AT5G15580 (E=2e-173) LNG1 | LNG1 (LONGIFOLIA1)
Coordinates
chrA02:-:3781900..3785017
Molecular Weight (calculated)
95156.8 Da
IEP (calculated)
9.804
GRAVY (calculated)
-0.858
Length
851 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAKLLYNLS DENPNLNKQF GCMNGIFQVF YRQHYPARRV VVAGDELRSL PSGRTIENVG GTNVTTAKET EKSKKKKKAA KERQRGGVSS ESSSRLSFSS
101: SPSSSSFSSE SQFEQPGLMQ TSNGENPARG GLMMSSDLRE LVRNSIHKET RARDEEESKP ERANVSLLKE SSPARRVVKL KDSPRFSYDE RETRKTGAKF
201: KETPRLSLDS RSNSFKSARS SSSPEPQELV TGHHRRTTSS VVAKLMGLEV IQDECVTDQV RENRFCDSPR PTLQRSRSPD PIKNVMPAKF PMKAAARTQV
301: DGAKNQVKGV DAATTLTVYG EIQKRLSQLE FKNSEKDLTA LKQILEAMET KQKLISKDDD NNSLVPSAAT SPSSKSFRSS SIVVMKASAP VFKETGNYGS
401: ASSSPRPGVY KVKTDSPTKN TGSRPLAKSG KSQKPSVSPR TQPKELGFEK QSRPTSPKPE QNKIQRQQLS RQQKESASPR RIKSRSMQQS EDRLSDESSD
501: LRSLRSDSNV SSASNLDSEV TSRYRYERNS DFTEQQHTPK QRSPELGMRS LPKPLKVTVE QPSPVSVLDV AFDEDESPSP VRKISVVFKD DDHLRSEESQ
601: WMNKHKALRR SIVWPESNGS LDQSDAELNE GIMEEGGKLN NNGDHHKYIS EILLASGLLR DIDYSMLSIQ LHQAHLPINP SLFFVLEQSK TSNVTQHDKK
701: HRGIGFGQQQ TANLIERSRR KLVFDTINEI LARKFAAEGC TKQPYITSSI SQLRRTNKSS KGNELLETVC SEIDRLQDNS KCILDEDDED LIWEDLQGQG
801: MNWKEIEGET PGLVLDIERL IFKDLISEVV TSEVAASPGM LSGKPRQLFN C
101: SPSSSSFSSE SQFEQPGLMQ TSNGENPARG GLMMSSDLRE LVRNSIHKET RARDEEESKP ERANVSLLKE SSPARRVVKL KDSPRFSYDE RETRKTGAKF
201: KETPRLSLDS RSNSFKSARS SSSPEPQELV TGHHRRTTSS VVAKLMGLEV IQDECVTDQV RENRFCDSPR PTLQRSRSPD PIKNVMPAKF PMKAAARTQV
301: DGAKNQVKGV DAATTLTVYG EIQKRLSQLE FKNSEKDLTA LKQILEAMET KQKLISKDDD NNSLVPSAAT SPSSKSFRSS SIVVMKASAP VFKETGNYGS
401: ASSSPRPGVY KVKTDSPTKN TGSRPLAKSG KSQKPSVSPR TQPKELGFEK QSRPTSPKPE QNKIQRQQLS RQQKESASPR RIKSRSMQQS EDRLSDESSD
501: LRSLRSDSNV SSASNLDSEV TSRYRYERNS DFTEQQHTPK QRSPELGMRS LPKPLKVTVE QPSPVSVLDV AFDEDESPSP VRKISVVFKD DDHLRSEESQ
601: WMNKHKALRR SIVWPESNGS LDQSDAELNE GIMEEGGKLN NNGDHHKYIS EILLASGLLR DIDYSMLSIQ LHQAHLPINP SLFFVLEQSK TSNVTQHDKK
701: HRGIGFGQQQ TANLIERSRR KLVFDTINEI LARKFAAEGC TKQPYITSSI SQLRRTNKSS KGNELLETVC SEIDRLQDNS KCILDEDDED LIWEDLQGQG
801: MNWKEIEGET PGLVLDIERL IFKDLISEVV TSEVAASPGM LSGKPRQLFN C
001: MSAKLLYNLS DENPNLNKQI GCMNGIFQVF YRQHYPPRRV TGDELKSLPS GKASDNVGDT NISADKKETE KSKKKKTAKE KQRGVSSESS SRLSFSSSPC
101: SSSFSSADIS TTASQFEQPG LSNGENPVRE PTNGSPRWGG LMMPSDIREL VRSSIHKETR TRDEEALSQQ PKSARANVSL LKESSPSRNS NEWSEGRRVV
201: KLKDSPRFSY DERETRKTGA KLKETPRLSL DSRSNSFRSA RSSCSPEPQE LVTGHRRTTS SVVAKLMGLE VIPDEPVTIQ NRENRFCDSP RPTSRVEVDL
301: QRSRGFDSIK KMMPAKFPMK ASPWAQVDGA KNQVKIPDAT TLTVYGEIQK RLSQLEFKKS EKDLRALKQI LEAMEKTQQL ISKDDDDNKT LCSSNFMQRN
401: NQPIPSAINT SSMNFKSSSI VVMKAATAPV FKDTGIAGSA SFSPRNVALP NVKVGNLRQA QKVIPRKQSA MDVTPRPGYY KGQTESTMKN TSTRPLQSKS
501: DMAKSGKIQK PSVSLRTPPK KLGFEKQSRP TSPKPELNKN QRQQLSRQQT ESASPRRKPG IKSRGLQQSE DRLSDESSDL RSLRSDSNVS LASNLDTEVT
601: SRYNYERNSD ITEQHTPKQR SPDLGMRSLS KPLKVTVEQP SPVSVLDVAF DEDDSPSPVR KISIVFKEDD NLSSEESHWM NKNNNLCRSI VWPESNTSLK
701: QPDAELTEGF MEDDAEFKNG DHKYISEIML ASGLLRDIDY SMISIQLHQA HLPINPSLFF VLEQNKTSNV SLQDNKHKGR GFGQQQTVNL VERSKRKLIF
801: DTINEILAHR FAAEGCTKQP SITLSISTQR THEKSSRGEE LLQTLCSEID RLQDNSKCIL DEDDEDLIWE DLQSHGMNWK EIEGETPGLV LDIERLIFKD
901: LIGEVVTSEF AAFPRMLSGQ PRQLFHC
101: SSSFSSADIS TTASQFEQPG LSNGENPVRE PTNGSPRWGG LMMPSDIREL VRSSIHKETR TRDEEALSQQ PKSARANVSL LKESSPSRNS NEWSEGRRVV
201: KLKDSPRFSY DERETRKTGA KLKETPRLSL DSRSNSFRSA RSSCSPEPQE LVTGHRRTTS SVVAKLMGLE VIPDEPVTIQ NRENRFCDSP RPTSRVEVDL
301: QRSRGFDSIK KMMPAKFPMK ASPWAQVDGA KNQVKIPDAT TLTVYGEIQK RLSQLEFKKS EKDLRALKQI LEAMEKTQQL ISKDDDDNKT LCSSNFMQRN
401: NQPIPSAINT SSMNFKSSSI VVMKAATAPV FKDTGIAGSA SFSPRNVALP NVKVGNLRQA QKVIPRKQSA MDVTPRPGYY KGQTESTMKN TSTRPLQSKS
501: DMAKSGKIQK PSVSLRTPPK KLGFEKQSRP TSPKPELNKN QRQQLSRQQT ESASPRRKPG IKSRGLQQSE DRLSDESSDL RSLRSDSNVS LASNLDTEVT
601: SRYNYERNSD ITEQHTPKQR SPDLGMRSLS KPLKVTVEQP SPVSVLDVAF DEDDSPSPVR KISIVFKEDD NLSSEESHWM NKNNNLCRSI VWPESNTSLK
701: QPDAELTEGF MEDDAEFKNG DHKYISEIML ASGLLRDIDY SMISIQLHQA HLPINPSLFF VLEQNKTSNV SLQDNKHKGR GFGQQQTVNL VERSKRKLIF
801: DTINEILAHR FAAEGCTKQP SITLSISTQR THEKSSRGEE LLQTLCSEID RLQDNSKCIL DEDDEDLIWE DLQSHGMNWK EIEGETPGLV LDIERLIFKD
901: LIGEVVTSEF AAFPRMLSGQ PRQLFHC
Arabidopsis Description
LNG1Protein LONGIFOLIA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.