Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400003717 | Potato | nucleus | 81.06 | 62.96 |
| VIT_14s0068g00360.t01 | Wine grape | nucleus | 32.56 | 24.41 |
| Bra039160.1-P | Field mustard | nucleus | 25.75 | 23.05 |
| CDY60473 | Canola | nucleus | 25.75 | 22.88 |
| KRH01314 | Soybean | nucleus | 29.97 | 22.59 |
| CDX91979 | Canola | nucleus | 26.29 | 22.57 |
| KRH45061 | Soybean | nucleus | 29.84 | 22.51 |
| CDY43253 | Canola | nucleus | 25.2 | 22.24 |
| Bra001034.1-P | Field mustard | nucleus | 25.75 | 22.05 |
| CDX74270 | Canola | nucleus | 25.75 | 22.05 |
| Solyc03g115000.2.1 | Tomato | nucleus | 32.56 | 21.89 |
| KRH18379 | Soybean | nucleus | 28.88 | 21.52 |
| CDX85545 | Canola | nucleus | 23.43 | 21.42 |
| KRG93656 | Soybean | nucleus | 28.47 | 21.15 |
| CDX69516 | Canola | nucleus | 25.2 | 20.65 |
| Bra008689.1-P | Field mustard | nucleus | 25.07 | 20.54 |
| AT3G02170.1 | Thale cress | nucleus | 25.2 | 20.44 |
| AT5G15580.1 | Thale cress | nucleus | 25.34 | 20.06 |
| Bra023526.1-P | Field mustard | nucleus | 23.16 | 19.98 |
| CDX90985 | Canola | nucleus | 22.75 | 19.58 |
| CDY26440 | Canola | nucleus | 23.71 | 19.48 |
| GSMUA_Achr4P32860_001 | Banana | nucleus | 25.2 | 18.94 |
| TraesCS2D01G183400.1 | Wheat | nucleus | 22.75 | 17.51 |
| TraesCS2B01G202300.1 | Wheat | nucleus | 22.34 | 17.26 |
| TraesCS2A01G176000.1 | Wheat | nucleus | 22.48 | 17.22 |
| Os03t0418700-02 | Rice | nucleus | 21.66 | 17.17 |
| HORVU2Hr1G032710.2 | Barley | cytosol | 22.21 | 17.07 |
| Os07t0603300-01 | Rice | nucleus | 21.66 | 16.91 |
| KXG36646 | Sorghum | nucleus | 21.93 | 16.79 |
| TraesCS2B01G281200.2 | Wheat | cytosol | 24.11 | 16.6 |
| Zm00001d006828_P001 | Maize | nucleus | 21.53 | 16.54 |
| Zm00001d022072_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 21.25 | 16.4 |
| Os07t0109400-01 | Rice | nucleus | 24.25 | 16.35 |
| TraesCS2A01G261000.1 | Wheat | cytosol | 23.84 | 16.31 |
| HORVU2Hr1G063820.1 | Barley | cytosol | 23.84 | 16.29 |
| TraesCS2D01G262900.1 | Wheat | cytosol | 23.84 | 16.26 |
| EER98557 | Sorghum | nucleus | 23.3 | 15.77 |
| KXG39125 | Sorghum | plastid | 19.35 | 15.55 |
| Zm00001d005297_P006 | Maize | nucleus | 23.3 | 15.55 |
| GSMUA_Achr4P07300_001 | Banana | cytosol | 19.07 | 15.45 |
| Zm00001d019700_P006 | Maize | nucleus | 21.53 | 14.84 |
| GSMUA_Achr7P26670_001 | Banana | nucleus | 13.22 | 14.0 |
| GSMUA_Achr4P14410_001 | Banana | nucleus | 16.21 | 13.71 |
| Solyc02g089030.1.1 | Tomato | nucleus | 0.14 | 1.41 |
Protein Annotations
| EnsemblPlants:Solyc02g089050.2.1 | EnsemblPlantsGene:Solyc02g089050.2 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016049 | GO:GO:0040007 | GO:GO:0051513 | InterPro:LNG1/2 | ncoils:Coil | PANTHER:PTHR31680 |
| PANTHER:PTHR31680:SF4 | SEG:seg | UniParc:UPI00027688BD | UniProt:K4BC59 | MapMan:13.4.1.2.2 | : |
Description
No Description!
Coordinates
chr2:-:50936405..50940871
Molecular Weight (calculated)
82783.4 Da
IEP (calculated)
10.371
GRAVY (calculated)
-1.008
Length
734 amino acids
Sequence
(BLAST)
(BLAST)
001: MSARMLSSIT EDNKDLHKKI GCMNGLFQLF DRHHFLIGKH LHGQNHKRLL TGVTDKMETK CTMQLATEKT PRDVARNKVE SSKANPKVEQ SKKPQEEQPL
101: CGQRNLPESP SKTLSYKQPS SPSHSGRQSP DFRDVVKDSM HREARSLSVK TVTKVEGKLH VMKHIDSPRP FQQPNCGKPS DGTRNVTAKF RDAPRNSKDD
201: LKHAPRDHPR FSYDERDSRE AMRSSIRLKD LPRLSLDSRE QSFRSSASES RSNFLLGDHK RSSSVVAKLM GLEALPNSIP SNEVDTVIPK SFSTNNSVSV
301: SIKTAEKSKN NQVTRFSQIN EKDFGSPRMK STNSIMRAAS TSRLPLEPAP WRQPEACRTP LKSSARNTDV ELSIQSPKLS SSVYGEMEKR ITELEFRKSG
401: KDLRALKQIL EAMQKTRARL DVQTEELADS DANLEIVQKR QQCNLLSPTI KGTRPPKRED TADKKTWKDV TPRAKNIRDS GWLLPSPDRK TKEGTSRAVQ
501: NPTLRQQKEG SYPAIGRSSG TASPRPLQKK KQSCPTTTSP EFSRVRRQSI KQSKESGSSK RRLQAKPNNL LRVDEESSEI SSSTRNFSEQ SDAASLQSES
601: NNSLSSHAEG EVTSRNHCVR VNAKRLEDSK DKSDILRLNE DRTMAELAIS TIEQPSPVSV LDATFYEEDS PSPVKKKTTA FRVEDATDEL WYLEYQDHSP
701: YSKRIDLGTE ATTQKKLEHI KDLVNQLRLL DSKS
101: CGQRNLPESP SKTLSYKQPS SPSHSGRQSP DFRDVVKDSM HREARSLSVK TVTKVEGKLH VMKHIDSPRP FQQPNCGKPS DGTRNVTAKF RDAPRNSKDD
201: LKHAPRDHPR FSYDERDSRE AMRSSIRLKD LPRLSLDSRE QSFRSSASES RSNFLLGDHK RSSSVVAKLM GLEALPNSIP SNEVDTVIPK SFSTNNSVSV
301: SIKTAEKSKN NQVTRFSQIN EKDFGSPRMK STNSIMRAAS TSRLPLEPAP WRQPEACRTP LKSSARNTDV ELSIQSPKLS SSVYGEMEKR ITELEFRKSG
401: KDLRALKQIL EAMQKTRARL DVQTEELADS DANLEIVQKR QQCNLLSPTI KGTRPPKRED TADKKTWKDV TPRAKNIRDS GWLLPSPDRK TKEGTSRAVQ
501: NPTLRQQKEG SYPAIGRSSG TASPRPLQKK KQSCPTTTSP EFSRVRRQSI KQSKESGSSK RRLQAKPNNL LRVDEESSEI SSSTRNFSEQ SDAASLQSES
601: NNSLSSHAEG EVTSRNHCVR VNAKRLEDSK DKSDILRLNE DRTMAELAIS TIEQPSPVSV LDATFYEEDS PSPVKKKTTA FRVEDATDEL WYLEYQDHSP
701: YSKRIDLGTE ATTQKKLEHI KDLVNQLRLL DSKS
0001: MAAKLLHSLA DDSADLQKQI GCMNGIFQIF DRHHVLTGRR KSLTLGNGNA ININYERDSV DTIYQQKETF QDSNIGGNVK EKRRVSTESS RVSFSSSCSS
0101: SPSSSEFNRG VQPDASAYDR ANFQESPTSD PEMTEGNGFS HLGLDLRDVV RDSMYREARG LLSKTPMTRE EVVRQSRRED SPRPYGLKQS TPMDLNESFR
0201: VLARLRETSQ HYNELGMKDA PRYSVDSHDT LKSRQKLKEL PRLSLDSRER ATRNSSVDPK SSKLSESFSE SCSSSSKKRP PSVVAKLMGL ETLPGSPLGR
0301: DIHQFGLNKT NISDQNDDPF SRSLREKNLN RAIRFSPSSP RSLGKDPASP RWRNSDFVMK PLSNTRFPVE PAPWKHADRN RVLQKQASMP VKAKPYEAPN
0401: FPPTVYSEME RRLNDLEFKH SGKDLRALKQ ILESMQSKGF LDTEKQQQST NFAVQRDYER ENSATSNHAM SSRTRVQSSS SNQVYQSPIV IMKPAKLVEK
0501: AGIPASSLIP IHSLTGIKKI RREKPDDKGT SASNSKRVTK DCSPGNRRAE SCTSSFDKKS DSRNVRSSSK KPQQVSKESA SKSSGSVSPR LQQKKLEYDK
0601: RSRPPTPPDS SKSRKPSNQQ LVESTSPGGR RRPKGQKSLQ QVDDQLSQAS NESRTSSHGI CTQSETEASA CVEKSTEADG GKSPSVIEAA KAVVSNLMQN
0701: KSSPRFSEDG LSANLSLVAL EHPSPISVLD ASTYRETEPS PVKTQGNVAH DFGDENCEDQ WNPAYSFSET TSSFSPEINR KKLQNVEHLV QKLRRLNSSH
0801: DEASQDYIAS LCENADPTTD HRYISEILLA SGLLLRDLGS GLTTFQLHPS GHPINPELFF VLEQTKGSST THLLHKEESK VLKNEKLNRK LVFDLVNEIL
0901: VEKLASVEAT TNPLMKSYAK VTKKAVSAQQ LLKELCSAIE TQQKQATKRS ENFLLEEEDD FLKSILAEDV TIRSGNWADF SGEMSGLVLD VERLVFKDLV
1001: NEIVHAETSR LQAKSGRRRT LFADQ
0101: SPSSSEFNRG VQPDASAYDR ANFQESPTSD PEMTEGNGFS HLGLDLRDVV RDSMYREARG LLSKTPMTRE EVVRQSRRED SPRPYGLKQS TPMDLNESFR
0201: VLARLRETSQ HYNELGMKDA PRYSVDSHDT LKSRQKLKEL PRLSLDSRER ATRNSSVDPK SSKLSESFSE SCSSSSKKRP PSVVAKLMGL ETLPGSPLGR
0301: DIHQFGLNKT NISDQNDDPF SRSLREKNLN RAIRFSPSSP RSLGKDPASP RWRNSDFVMK PLSNTRFPVE PAPWKHADRN RVLQKQASMP VKAKPYEAPN
0401: FPPTVYSEME RRLNDLEFKH SGKDLRALKQ ILESMQSKGF LDTEKQQQST NFAVQRDYER ENSATSNHAM SSRTRVQSSS SNQVYQSPIV IMKPAKLVEK
0501: AGIPASSLIP IHSLTGIKKI RREKPDDKGT SASNSKRVTK DCSPGNRRAE SCTSSFDKKS DSRNVRSSSK KPQQVSKESA SKSSGSVSPR LQQKKLEYDK
0601: RSRPPTPPDS SKSRKPSNQQ LVESTSPGGR RRPKGQKSLQ QVDDQLSQAS NESRTSSHGI CTQSETEASA CVEKSTEADG GKSPSVIEAA KAVVSNLMQN
0701: KSSPRFSEDG LSANLSLVAL EHPSPISVLD ASTYRETEPS PVKTQGNVAH DFGDENCEDQ WNPAYSFSET TSSFSPEINR KKLQNVEHLV QKLRRLNSSH
0801: DEASQDYIAS LCENADPTTD HRYISEILLA SGLLLRDLGS GLTTFQLHPS GHPINPELFF VLEQTKGSST THLLHKEESK VLKNEKLNRK LVFDLVNEIL
0901: VEKLASVEAT TNPLMKSYAK VTKKAVSAQQ LLKELCSAIE TQQKQATKRS ENFLLEEEDD FLKSILAEDV TIRSGNWADF SGEMSGLVLD VERLVFKDLV
1001: NEIVHAETSR LQAKSGRRRT LFADQ
Arabidopsis Description
LONGIFOLIA protein [Source:UniProtKB/TrEMBL;Acc:Q0WNQ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.