Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G202300.1 | Wheat | nucleus | 72.98 | 72.21 |
| TraesCS2D01G183400.1 | Wheat | nucleus | 72.87 | 71.8 |
| HORVU2Hr1G032710.2 | Barley | cytosol | 72.13 | 70.99 |
| TraesCS2A01G176000.1 | Wheat | nucleus | 71.7 | 70.35 |
| KXG36646 | Sorghum | nucleus | 67.23 | 65.9 |
| Zm00001d006828_P001 | Maize | nucleus | 65.43 | 64.4 |
| Zm00001d022072_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 64.04 | 63.3 |
| Os03t0418700-02 | Rice | nucleus | 50.0 | 50.76 |
| Solyc02g089030.1.1 | Tomato | nucleus | 3.09 | 40.85 |
| CDX81888 | Canola | nucleus | 27.34 | 30.89 |
| Bra031037.1-P | Field mustard | nucleus | 26.7 | 30.06 |
| CDY59655 | Canola | nucleus | 26.7 | 30.06 |
| CDY42438 | Canola | nucleus | 29.89 | 29.86 |
| CDY49132 | Canola | nucleus | 28.51 | 29.16 |
| CDX83829 | Canola | cytosol | 24.57 | 28.14 |
| Bra008136.1-P | Field mustard | nucleus | 30.0 | 28.09 |
| CDX85545 | Canola | nucleus | 23.4 | 27.4 |
| Bra039160.1-P | Field mustard | nucleus | 23.51 | 26.95 |
| CDX96710 | Canola | nucleus | 25.0 | 26.83 |
| VIT_17s0000g05210.t01 | Wine grape | cytosol | 31.28 | 26.75 |
| CDX91979 | Canola | nucleus | 24.15 | 26.55 |
| CDY43253 | Canola | nucleus | 23.4 | 26.44 |
| Bra023526.1-P | Field mustard | nucleus | 23.94 | 26.44 |
| GSMUA_Achr4P07300_001 | Banana | cytosol | 25.43 | 26.38 |
| AT1G74160.1 | Thale cress | nucleus | 28.72 | 26.34 |
| CDY60473 | Canola | nucleus | 23.09 | 26.27 |
| KRH54713 | Soybean | nucleus | 30.74 | 26.18 |
| KRH63201 | Soybean | nucleus | 30.64 | 26.16 |
| PGSC0003DMT400063076 | Potato | nucleus | 30.11 | 25.92 |
| CDX74270 | Canola | nucleus | 23.62 | 25.9 |
| Bra008689.1-P | Field mustard | nucleus | 24.68 | 25.89 |
| CDX69516 | Canola | nucleus | 24.68 | 25.89 |
| Solyc03g115000.2.1 | Tomato | nucleus | 30.0 | 25.82 |
| Bra001034.1-P | Field mustard | nucleus | 23.51 | 25.79 |
| VIT_14s0068g00360.t01 | Wine grape | nucleus | 26.81 | 25.74 |
| KRG93656 | Soybean | nucleus | 27.02 | 25.71 |
| KRH18379 | Soybean | nucleus | 26.91 | 25.69 |
| KRH56796 | Soybean | nucleus | 28.19 | 25.21 |
| KRH03155 | Soybean | nucleus | 28.09 | 25.14 |
| KRH01314 | Soybean | nucleus | 25.96 | 25.05 |
| AT1G18620.2 | Thale cress | nucleus | 27.02 | 25.05 |
| Os07t0109400-01 | Rice | nucleus | 28.94 | 24.98 |
| AT5G15580.1 | Thale cress | nucleus | 24.57 | 24.92 |
| GSMUA_Achr7P26670_001 | Banana | nucleus | 18.3 | 24.82 |
| CDX90985 | Canola | nucleus | 22.34 | 24.62 |
| PGSC0003DMT400003717 | Potato | nucleus | 24.57 | 24.44 |
| KRH45061 | Soybean | nucleus | 25.21 | 24.36 |
| CDY26440 | Canola | nucleus | 23.09 | 24.3 |
| AT3G02170.1 | Thale cress | nucleus | 23.3 | 24.2 |
| GSMUA_Achr4P14410_001 | Banana | nucleus | 21.28 | 23.04 |
| Solyc02g089050.2.1 | Tomato | nucleus | 16.91 | 21.66 |
Protein Annotations
| MapMan:13.4.1.2.2 | EntrezGene:4343837 | ProteinID:AKJ87841.1 | ProteinID:BAC84476.1 | ProteinID:BAD31717.1 | ProteinID:BAF22126.1 |
| ncoils:Coil | InterPro:DUF4378 | ProteinID:EAZ40572.1 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016049 | GO:GO:0040007 | GO:GO:0051513 | InterPro:LNG1/2 | EnsemblPlantsGene:Os07g0603300 |
| EnsemblPlants:Os07t0603300-01 | PFAM:PF14309 | PANTHER:PTHR31680 | PANTHER:PTHR31680:SF4 | UniProt:Q6YW00 | UniParc:UPI00001BF6DD |
| RefSeq:XP_015647277.1 | SEG:seg | : | : | : | : |
Description
Grain Length on Chromosome 7, grain width QTL on chromosome 7TON1 RECRUIT MOTIF (TRM)-containing protein, Regulation of grain size and shape (Os07t0603300-01)
Coordinates
chr7:-:24664328..24669321
Molecular Weight (calculated)
104258.0 Da
IEP (calculated)
9.651
GRAVY (calculated)
-0.792
Length
940 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPARVLGGG GGGGGLGDEA PELERQMGCM AGIFQIFDRR QRLLTARRRR PPPKMLPPGP GHTLPRSSSN VAAQSSSTSK IVLEKTFSKS MTENSSLSIE
101: SSRASCSSSS CSSFSSLDGN KSIQQELPYI NEQLFVQRPL KSSPSLKDPV MDTRSGQSNI GFRDIVKDSI NRDTGGLTVK TSVKDARRNG QYKDSPRPLL
201: LSKSMDGTYV IGIDRSTKVP ANAVESSRRF PEQSRFSCDD RRLLRPVEAQ ENKKPSTRLK ELPRLSLDSR KETLSSSSRQ KTFSYRRTDD SLMDALRPQD
301: SPGHRRASSV IAKLMGLEEA PNATGVLTVD SYEPERSPRP AEDTQKEHPV PSPRRFCQDP RESLPKDESP AMKTKPSPRI LTESAPWRQQ EKIATSSKAS
401: QCRDAEVRPR TASLYAYIER RGGGLEFLEC NKDFRALRIL EALHAKDAKR QNDGNGALTV AAQQAGDALN TSSRHFQPPI VVMKPARSTE KQPGVSLASV
501: DPLAGFRNLR KLQARDAPCI GEHETSTNEK VHSRISRAQS KSDEPASRAS SPRPTGSSSP RTVQRKAESE RRSRPPVSPK SPSKKSSEAA SPGGRTRTKP
601: SQGKNHRDNE VSKSPRSRIS MVKEIDISIM DFQKPLASTP SHKGTPSVLA SDQKINSLEN APSPISVLDT SYYHTRLSYS FKDGETHSSE ECWNPNSLPD
701: TPQSKTSSEV SQIKPENFEA LIQKLEQLQS MNDEVANKKD HQYIYEILLA SGLLHKELSF VAMPGQAWPS SCLINPELFL ILEQTKPDFA SADQTVTKSS
801: KANTEKLHRR IVFDLVNEIT AQKMNIHCSA SQSAKSLQLR KYNGWRLFKD LCTEVDRLQS ESSAIKCSEE DGDERMLLVE DPLNGIEDWS FDSESPSTVL
901: EIERLIYKDL IDEVIWDEAT GKMQGGQWNL KRQLSFSSTS
101: SSRASCSSSS CSSFSSLDGN KSIQQELPYI NEQLFVQRPL KSSPSLKDPV MDTRSGQSNI GFRDIVKDSI NRDTGGLTVK TSVKDARRNG QYKDSPRPLL
201: LSKSMDGTYV IGIDRSTKVP ANAVESSRRF PEQSRFSCDD RRLLRPVEAQ ENKKPSTRLK ELPRLSLDSR KETLSSSSRQ KTFSYRRTDD SLMDALRPQD
301: SPGHRRASSV IAKLMGLEEA PNATGVLTVD SYEPERSPRP AEDTQKEHPV PSPRRFCQDP RESLPKDESP AMKTKPSPRI LTESAPWRQQ EKIATSSKAS
401: QCRDAEVRPR TASLYAYIER RGGGLEFLEC NKDFRALRIL EALHAKDAKR QNDGNGALTV AAQQAGDALN TSSRHFQPPI VVMKPARSTE KQPGVSLASV
501: DPLAGFRNLR KLQARDAPCI GEHETSTNEK VHSRISRAQS KSDEPASRAS SPRPTGSSSP RTVQRKAESE RRSRPPVSPK SPSKKSSEAA SPGGRTRTKP
601: SQGKNHRDNE VSKSPRSRIS MVKEIDISIM DFQKPLASTP SHKGTPSVLA SDQKINSLEN APSPISVLDT SYYHTRLSYS FKDGETHSSE ECWNPNSLPD
701: TPQSKTSSEV SQIKPENFEA LIQKLEQLQS MNDEVANKKD HQYIYEILLA SGLLHKELSF VAMPGQAWPS SCLINPELFL ILEQTKPDFA SADQTVTKSS
801: KANTEKLHRR IVFDLVNEIT AQKMNIHCSA SQSAKSLQLR KYNGWRLFKD LCTEVDRLQS ESSAIKCSEE DGDERMLLVE DPLNGIEDWS FDSESPSTVL
901: EIERLIYKDL IDEVIWDEAT GKMQGGQWNL KRQLSFSSTS
0001: MAAKLLHSLA DDSADLQKQI GCMNGIFQIF DRHHVLTGRR KSLTLGNGNA ININYERDSV DTIYQQKETF QDSNIGGNVK EKRRVSTESS RVSFSSSCSS
0101: SPSSSEFNRG VQPDASAYDR ANFQESPTSD PEMTEGNGFS HLGLDLRDVV RDSMYREARG LLSKTPMTRE EVVRQSRRED SPRPYGLKQS TPMDLNESFR
0201: VLARLRETSQ HYNELGMKDA PRYSVDSHDT LKSRQKLKEL PRLSLDSRER ATRNSSVDPK SSKLSESFSE SCSSSSKKRP PSVVAKLMGL ETLPGSPLGR
0301: DIHQFGLNKT NISDQNDDPF SRSLREKNLN RAIRFSPSSP RSLGKDPASP RWRNSDFVMK PLSNTRFPVE PAPWKHADRN RVLQKQASMP VKAKPYEAPN
0401: FPPTVYSEME RRLNDLEFKH SGKDLRALKQ ILESMQSKGF LDTEKQQQST NFAVQRDYER ENSATSNHAM SSRTRVQSSS SNQVYQSPIV IMKPAKLVEK
0501: AGIPASSLIP IHSLTGIKKI RREKPDDKGT SASNSKRVTK DCSPGNRRAE SCTSSFDKKS DSRNVRSSSK KPQQVSKESA SKSSGSVSPR LQQKKLEYDK
0601: RSRPPTPPDS SKSRKPSNQQ LVESTSPGGR RRPKGQKSLQ QVDDQLSQAS NESRTSSHGI CTQSETEASA CVEKSTEADG GKSPSVIEAA KAVVSNLMQN
0701: KSSPRFSEDG LSANLSLVAL EHPSPISVLD ASTYRETEPS PVKTQGNVAH DFGDENCEDQ WNPAYSFSET TSSFSPEINR KKLQNVEHLV QKLRRLNSSH
0801: DEASQDYIAS LCENADPTTD HRYISEILLA SGLLLRDLGS GLTTFQLHPS GHPINPELFF VLEQTKGSST THLLHKEESK VLKNEKLNRK LVFDLVNEIL
0901: VEKLASVEAT TNPLMKSYAK VTKKAVSAQQ LLKELCSAIE TQQKQATKRS ENFLLEEEDD FLKSILAEDV TIRSGNWADF SGEMSGLVLD VERLVFKDLV
1001: NEIVHAETSR LQAKSGRRRT LFADQ
0101: SPSSSEFNRG VQPDASAYDR ANFQESPTSD PEMTEGNGFS HLGLDLRDVV RDSMYREARG LLSKTPMTRE EVVRQSRRED SPRPYGLKQS TPMDLNESFR
0201: VLARLRETSQ HYNELGMKDA PRYSVDSHDT LKSRQKLKEL PRLSLDSRER ATRNSSVDPK SSKLSESFSE SCSSSSKKRP PSVVAKLMGL ETLPGSPLGR
0301: DIHQFGLNKT NISDQNDDPF SRSLREKNLN RAIRFSPSSP RSLGKDPASP RWRNSDFVMK PLSNTRFPVE PAPWKHADRN RVLQKQASMP VKAKPYEAPN
0401: FPPTVYSEME RRLNDLEFKH SGKDLRALKQ ILESMQSKGF LDTEKQQQST NFAVQRDYER ENSATSNHAM SSRTRVQSSS SNQVYQSPIV IMKPAKLVEK
0501: AGIPASSLIP IHSLTGIKKI RREKPDDKGT SASNSKRVTK DCSPGNRRAE SCTSSFDKKS DSRNVRSSSK KPQQVSKESA SKSSGSVSPR LQQKKLEYDK
0601: RSRPPTPPDS SKSRKPSNQQ LVESTSPGGR RRPKGQKSLQ QVDDQLSQAS NESRTSSHGI CTQSETEASA CVEKSTEADG GKSPSVIEAA KAVVSNLMQN
0701: KSSPRFSEDG LSANLSLVAL EHPSPISVLD ASTYRETEPS PVKTQGNVAH DFGDENCEDQ WNPAYSFSET TSSFSPEINR KKLQNVEHLV QKLRRLNSSH
0801: DEASQDYIAS LCENADPTTD HRYISEILLA SGLLLRDLGS GLTTFQLHPS GHPINPELFF VLEQTKGSST THLLHKEESK VLKNEKLNRK LVFDLVNEIL
0901: VEKLASVEAT TNPLMKSYAK VTKKAVSAQQ LLKELCSAIE TQQKQATKRS ENFLLEEEDD FLKSILAEDV TIRSGNWADF SGEMSGLVLD VERLVFKDLV
1001: NEIVHAETSR LQAKSGRRRT LFADQ
Arabidopsis Description
LONGIFOLIA protein [Source:UniProtKB/TrEMBL;Acc:Q0WNQ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.