Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH54713 | Soybean | nucleus | 59.51 | 59.24 |
| KRH63201 | Soybean | nucleus | 58.51 | 58.4 |
| Solyc03g115000.2.1 | Tomato | nucleus | 54.32 | 54.67 |
| PGSC0003DMT400063076 | Potato | nucleus | 54.05 | 54.4 |
| KRH56796 | Soybean | nucleus | 51.05 | 53.38 |
| KRH03155 | Soybean | nucleus | 50.05 | 52.38 |
| CDY49132 | Canola | nucleus | 42.22 | 50.49 |
| CDY42438 | Canola | nucleus | 42.77 | 49.95 |
| VIT_14s0068g00360.t01 | Wine grape | nucleus | 43.59 | 48.93 |
| Bra008136.1-P | Field mustard | nucleus | 43.77 | 47.91 |
| AT1G74160.1 | Thale cress | nucleus | 43.95 | 47.12 |
| CDY59655 | Canola | nucleus | 34.67 | 45.63 |
| Bra031037.1-P | Field mustard | nucleus | 34.67 | 45.63 |
| CDX81888 | Canola | nucleus | 34.3 | 45.31 |
| CDX96710 | Canola | nucleus | 35.21 | 44.18 |
| CDX83829 | Canola | cytosol | 32.94 | 44.09 |
| AT1G18620.2 | Thale cress | nucleus | 39.04 | 42.31 |
| GSMUA_Achr4P32860_001 | Banana | nucleus | 36.4 | 40.94 |
| TraesCS2D01G262900.1 | Wheat | cytosol | 34.39 | 35.13 |
| TraesCS2A01G261000.1 | Wheat | cytosol | 34.03 | 34.86 |
| HORVU2Hr1G063820.1 | Barley | cytosol | 34.03 | 34.82 |
| TraesCS2B01G281200.2 | Wheat | cytosol | 33.76 | 34.8 |
| EER98557 | Sorghum | nucleus | 34.21 | 34.69 |
| Zm00001d019700_P006 | Maize | nucleus | 33.03 | 34.08 |
| Os07t0109400-01 | Rice | nucleus | 33.58 | 33.88 |
| Zm00001d005297_P006 | Maize | nucleus | 33.3 | 33.27 |
| GSMUA_Achr4P07300_001 | Banana | cytosol | 26.93 | 32.67 |
| TraesCS2D01G183400.1 | Wheat | nucleus | 27.57 | 31.76 |
| KXG36646 | Sorghum | nucleus | 27.39 | 31.39 |
| TraesCS2B01G202300.1 | Wheat | nucleus | 27.12 | 31.37 |
| HORVU2Hr1G032710.2 | Barley | cytosol | 27.21 | 31.31 |
| Os07t0603300-01 | Rice | nucleus | 26.75 | 31.28 |
| TraesCS2A01G176000.1 | Wheat | nucleus | 27.21 | 31.21 |
| Zm00001d022072_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 26.66 | 30.81 |
| Zm00001d006828_P001 | Maize | nucleus | 26.66 | 30.68 |
| Os03t0418700-02 | Rice | nucleus | 25.3 | 30.02 |
| GSMUA_Achr7P26670_001 | Banana | nucleus | 18.74 | 29.73 |
| GSMUA_Achr4P14410_001 | Banana | nucleus | 23.2 | 29.38 |
| KXG39125 | Sorghum | plastid | 22.75 | 27.38 |
Protein Annotations
| EntrezGene:100253543 | wikigene:100253543 | MapMan:13.4.1.2.2 | ProteinID:CCB43143 | ProteinID:CCB43143.1 | ncoils:Coil |
| InterPro:DUF3741-assoc | InterPro:DUF4378 | UniProt:F6GTD4 | EMBL:FN594950 | GO:GO:0008150 | GO:GO:0009653 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0040007 | GO:GO:0051513 | InterPro:LNG1/2 |
| EntrezGene:LOC100253543 | wikigene:LOC100253543 | PFAM:PF14309 | PFAM:PF14383 | PANTHER:PTHR31680 | PANTHER:PTHR31680:SF3 |
| UniParc:UPI0001984F91 | ArrayExpress:VIT_17s0000g05210 | EnsemblPlantsGene:VIT_17s0000g05210 | EnsemblPlants:VIT_17s0000g05210.t01 | unigene:Vvi.6502 | RefSeq:XP_002265665 |
| RefSeq:XP_002265665.1 | RefSeq:XP_019082028.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr17:+:5700375..5706514
Molecular Weight (calculated)
121685.0 Da
IEP (calculated)
9.720
GRAVY (calculated)
-0.775
Length
1099 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAKLLHSLT DDNPDLQKQI GCMAGIFQLF DHHHILTGRR ISHKRLLPGN SYLNSSLETN STNVGHRHTA AGKNSNKSVN EKQKFSTESS RVSFSSSSCS
0101: SSMSSLECNK TAQPEPCSFD RIIFPETHSR DPAMNQLSAS PQLGRQSLDL RDLVKDSMYR EVRGLSVKTT TREEAVGHAV KPKDSPRPSQ PSKSMDGSYG
0201: VGTKGKQNVP VDLKESLRVL AKLREAPWYF NEARELPRSS YEAKDGPLPS IPKDAPRFSY DGREINRLSF ESQDTSKGTP KLKELPRLSL DSREGSMRGS
0301: NFDSRSNSVL RNLQKGSANS KDNVPNLKQI SESQKRPPSV VAKLMGLEAL PDSISVHDSQ MGLIRTCPIQ DCDPFSRSPK TPDPSSRPIQ MPYSPRSSWK
0401: EPTSPRWRNP DSVMKPISSS RFPIEPAPWR QQDGSRGSLK PASRNIKAPA RAPNSFPSVY SEIEKRLKDL EFKQSGKDLR ALKQILEAMQ AKGLLETRRE
0501: EQPSNFGTKR DEPKYTSFDQ KVRLASQRKT QHDTVCAATA GGANSRRSFD SPIVIMKPAK LVEKSSIPAS SVISIDGFSS FHKPQGGNFA DNRKDSVNSQ
0601: TAKVFTPKNS SRDHVTSSID KRSNVRNSRA AQTPTRPQQL PKENTSSLVK SSGSVSPRLQ QKKLELEKRS RLPSTSSELG KSRRQSHKMP TESSSPGGKC
0701: RPKSPNLQQS DDQLSEISSE SRNLSYQGDD ISVHSDSNME VTSTEHSTEI NGSRSPSMKA ANCPTSGLLK KKSTSRLAED VSLAELATIA PEQPSPVSVL
0801: DASVYIDDAP SPVKQTPTAL KDNGSWNSSN NHDEEQWKLK DDILSNSTGS GVTSEINRKK LQNIEHLVQK LKQLNSTHDE ASTDYIASLC ENTNPDHRYI
0901: SEILLASGLL LRDLDSSLTT YQFHPSGHPI NPELFFVLEQ TKGSTLICKE GCSGTVSNLK PDQGKFHRKL IFDAVNEILV GKLALAGPSP EPWIKPDKLA
1001: RKTLSAQKLL KELCSEIEQL QAIKSECIIE EKEDDFKSIL WKDVMHGSES WTDFCGEISG VVLDVERLIF KDLVDEIVMG ESTSARANPG RRCRRLFAK
0101: SSMSSLECNK TAQPEPCSFD RIIFPETHSR DPAMNQLSAS PQLGRQSLDL RDLVKDSMYR EVRGLSVKTT TREEAVGHAV KPKDSPRPSQ PSKSMDGSYG
0201: VGTKGKQNVP VDLKESLRVL AKLREAPWYF NEARELPRSS YEAKDGPLPS IPKDAPRFSY DGREINRLSF ESQDTSKGTP KLKELPRLSL DSREGSMRGS
0301: NFDSRSNSVL RNLQKGSANS KDNVPNLKQI SESQKRPPSV VAKLMGLEAL PDSISVHDSQ MGLIRTCPIQ DCDPFSRSPK TPDPSSRPIQ MPYSPRSSWK
0401: EPTSPRWRNP DSVMKPISSS RFPIEPAPWR QQDGSRGSLK PASRNIKAPA RAPNSFPSVY SEIEKRLKDL EFKQSGKDLR ALKQILEAMQ AKGLLETRRE
0501: EQPSNFGTKR DEPKYTSFDQ KVRLASQRKT QHDTVCAATA GGANSRRSFD SPIVIMKPAK LVEKSSIPAS SVISIDGFSS FHKPQGGNFA DNRKDSVNSQ
0601: TAKVFTPKNS SRDHVTSSID KRSNVRNSRA AQTPTRPQQL PKENTSSLVK SSGSVSPRLQ QKKLELEKRS RLPSTSSELG KSRRQSHKMP TESSSPGGKC
0701: RPKSPNLQQS DDQLSEISSE SRNLSYQGDD ISVHSDSNME VTSTEHSTEI NGSRSPSMKA ANCPTSGLLK KKSTSRLAED VSLAELATIA PEQPSPVSVL
0801: DASVYIDDAP SPVKQTPTAL KDNGSWNSSN NHDEEQWKLK DDILSNSTGS GVTSEINRKK LQNIEHLVQK LKQLNSTHDE ASTDYIASLC ENTNPDHRYI
0901: SEILLASGLL LRDLDSSLTT YQFHPSGHPI NPELFFVLEQ TKGSTLICKE GCSGTVSNLK PDQGKFHRKL IFDAVNEILV GKLALAGPSP EPWIKPDKLA
1001: RKTLSAQKLL KELCSEIEQL QAIKSECIIE EKEDDFKSIL WKDVMHGSES WTDFCGEISG VVLDVERLIF KDLVDEIVMG ESTSARANPG RRCRRLFAK
0001: MAAKLLHSLA DDSADLQKQI GCMNGIFQIF DRHHVLTGRR KSLTLGNGNA ININYERDSV DTIYQQKETF QDSNIGGNVK EKRRVSTESS RVSFSSSCSS
0101: SPSSSEFNRG VQPDASAYDR ANFQESPTSD PEMTEGNGFS HLGLDLRDVV RDSMYREARG LLSKTPMTRE EVVRQSRRED SPRPYGLKQS TPMDLNESFR
0201: VLARLRETSQ HYNELGMKDA PRYSVDSHDT LKSRQKLKEL PRLSLDSRER ATRNSSVDPK SSKLSESFSE SCSSSSKKRP PSVVAKLMGL ETLPGSPLGR
0301: DIHQFGLNKT NISDQNDDPF SRSLREKNLN RAIRFSPSSP RSLGKDPASP RWRNSDFVMK PLSNTRFPVE PAPWKHADRN RVLQKQASMP VKAKPYEAPN
0401: FPPTVYSEME RRLNDLEFKH SGKDLRALKQ ILESMQSKGF LDTEKQQQST NFAVQRDYER ENSATSNHAM SSRTRVQSSS SNQVYQSPIV IMKPAKLVEK
0501: AGIPASSLIP IHSLTGIKKI RREKPDDKGT SASNSKRVTK DCSPGNRRAE SCTSSFDKKS DSRNVRSSSK KPQQVSKESA SKSSGSVSPR LQQKKLEYDK
0601: RSRPPTPPDS SKSRKPSNQQ LVESTSPGGR RRPKGQKSLQ QVDDQLSQAS NESRTSSHGI CTQSETEASA CVEKSTEADG GKSPSVIEAA KAVVSNLMQN
0701: KSSPRFSEDG LSANLSLVAL EHPSPISVLD ASTYRETEPS PVKTQGNVAH DFGDENCEDQ WNPAYSFSET TSSFSPEINR KKLQNVEHLV QKLRRLNSSH
0801: DEASQDYIAS LCENADPTTD HRYISEILLA SGLLLRDLGS GLTTFQLHPS GHPINPELFF VLEQTKGSST THLLHKEESK VLKNEKLNRK LVFDLVNEIL
0901: VEKLASVEAT TNPLMKSYAK VTKKAVSAQQ LLKELCSAIE TQQKQATKRS ENFLLEEEDD FLKSILAEDV TIRSGNWADF SGEMSGLVLD VERLVFKDLV
1001: NEIVHAETSR LQAKSGRRRT LFADQ
0101: SPSSSEFNRG VQPDASAYDR ANFQESPTSD PEMTEGNGFS HLGLDLRDVV RDSMYREARG LLSKTPMTRE EVVRQSRRED SPRPYGLKQS TPMDLNESFR
0201: VLARLRETSQ HYNELGMKDA PRYSVDSHDT LKSRQKLKEL PRLSLDSRER ATRNSSVDPK SSKLSESFSE SCSSSSKKRP PSVVAKLMGL ETLPGSPLGR
0301: DIHQFGLNKT NISDQNDDPF SRSLREKNLN RAIRFSPSSP RSLGKDPASP RWRNSDFVMK PLSNTRFPVE PAPWKHADRN RVLQKQASMP VKAKPYEAPN
0401: FPPTVYSEME RRLNDLEFKH SGKDLRALKQ ILESMQSKGF LDTEKQQQST NFAVQRDYER ENSATSNHAM SSRTRVQSSS SNQVYQSPIV IMKPAKLVEK
0501: AGIPASSLIP IHSLTGIKKI RREKPDDKGT SASNSKRVTK DCSPGNRRAE SCTSSFDKKS DSRNVRSSSK KPQQVSKESA SKSSGSVSPR LQQKKLEYDK
0601: RSRPPTPPDS SKSRKPSNQQ LVESTSPGGR RRPKGQKSLQ QVDDQLSQAS NESRTSSHGI CTQSETEASA CVEKSTEADG GKSPSVIEAA KAVVSNLMQN
0701: KSSPRFSEDG LSANLSLVAL EHPSPISVLD ASTYRETEPS PVKTQGNVAH DFGDENCEDQ WNPAYSFSET TSSFSPEINR KKLQNVEHLV QKLRRLNSSH
0801: DEASQDYIAS LCENADPTTD HRYISEILLA SGLLLRDLGS GLTTFQLHPS GHPINPELFF VLEQTKGSST THLLHKEESK VLKNEKLNRK LVFDLVNEIL
0901: VEKLASVEAT TNPLMKSYAK VTKKAVSAQQ LLKELCSAIE TQQKQATKRS ENFLLEEEDD FLKSILAEDV TIRSGNWADF SGEMSGLVLD VERLVFKDLV
1001: NEIVHAETSR LQAKSGRRRT LFADQ
Arabidopsis Description
LONGIFOLIA protein [Source:UniProtKB/TrEMBL;Acc:Q0WNQ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.