Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX81888 | Canola | nucleus | 51.58 | 62.86 |
| CDX96710 | Canola | nucleus | 52.86 | 61.19 |
| Bra031037.1-P | Field mustard | nucleus | 50.0 | 60.72 |
| CDY59655 | Canola | nucleus | 50.0 | 60.72 |
| CDX83829 | Canola | cytosol | 48.92 | 60.41 |
| AT1G74160.1 | Thale cress | nucleus | 57.79 | 57.17 |
| VIT_17s0000g05210.t01 | Wine grape | cytosol | 42.31 | 39.04 |
| KRH54713 | Soybean | nucleus | 41.91 | 38.5 |
| KRH63201 | Soybean | nucleus | 41.62 | 38.33 |
| KRH03155 | Soybean | nucleus | 38.17 | 36.86 |
| KRH56796 | Soybean | nucleus | 38.17 | 36.82 |
| Solyc03g115000.2.1 | Tomato | nucleus | 39.55 | 36.72 |
| PGSC0003DMT400063076 | Potato | nucleus | 39.25 | 36.45 |
| GSMUA_Achr4P32860_001 | Banana | nucleus | 29.49 | 30.6 |
| TraesCS2D01G183400.1 | Wheat | nucleus | 25.74 | 27.36 |
| AT3G02170.1 | Thale cress | nucleus | 24.26 | 27.18 |
| TraesCS2B01G202300.1 | Wheat | nucleus | 25.44 | 27.16 |
| HORVU2Hr1G032710.2 | Barley | cytosol | 25.54 | 27.12 |
| Os07t0603300-01 | Rice | nucleus | 25.05 | 27.02 |
| TraesCS2A01G176000.1 | Wheat | nucleus | 25.15 | 26.62 |
| KXG36646 | Sorghum | nucleus | 24.85 | 26.28 |
| GSMUA_Achr7P26670_001 | Banana | nucleus | 17.95 | 26.26 |
| Os03t0418700-02 | Rice | nucleus | 23.96 | 26.24 |
| Zm00001d022072_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 24.46 | 26.08 |
| AT5G15580.1 | Thale cress | nucleus | 23.67 | 25.89 |
| Zm00001d006828_P001 | Maize | nucleus | 24.16 | 25.65 |
| EER98557 | Sorghum | nucleus | 27.42 | 25.65 |
| TraesCS2B01G281200.2 | Wheat | cytosol | 26.92 | 25.61 |
| Zm00001d019700_P006 | Maize | nucleus | 26.82 | 25.54 |
| TraesCS2D01G262900.1 | Wheat | cytosol | 27.02 | 25.46 |
| TraesCS2A01G261000.1 | Wheat | cytosol | 26.73 | 25.26 |
| HORVU2Hr1G063820.1 | Barley | cytosol | 26.63 | 25.14 |
| Os07t0109400-01 | Rice | nucleus | 26.82 | 24.98 |
| GSMUA_Achr4P07300_001 | Banana | cytosol | 22.19 | 24.83 |
| Zm00001d005297_P006 | Maize | nucleus | 26.82 | 24.73 |
| GSMUA_Achr4P14410_001 | Banana | nucleus | 20.61 | 24.08 |
| KXG39125 | Sorghum | plastid | 21.5 | 23.88 |
Protein Annotations
| MapMan:13.4.1.2.2 | EntrezGene:838443 | UniProt:A8MQH9 | ProteinID:AEE29736.1 | ArrayExpress:AT1G18620 | EnsemblPlantsGene:AT1G18620 |
| RefSeq:AT1G18620 | TAIR:AT1G18620 | RefSeq:AT1G18620-TAIR-G | EnsemblPlants:AT1G18620.2 | TAIR:AT1G18620.2 | Unigene:At.28038 |
| ncoils:Coil | InterPro:DUF3741-assoc | InterPro:DUF4378 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016049 | GO:GO:0040007 | GO:GO:0051513 | InterPro:LNG1/2 | RefSeq:NP_001077558.1 |
| PFAM:PF14309 | PFAM:PF14383 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31680 | PANTHER:PTHR31680:SF3 | UniParc:UPI00015054E7 | SEG:seg |
Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1); Has 1987 Blast hits to 1263 proteins in 207 species: Archae - 0; Bacteria - 172; Metazoa - 665; Fungi - 149; Plants - 271; Viruses - 6; Other Eukaryotes /.../ (source: NCBI BLink). [Source:TAIR;Acc:AT1G18620]
Coordinates
chr1:+:6410033..6414451
Molecular Weight (calculated)
114123.0 Da
IEP (calculated)
9.639
GRAVY (calculated)
-0.784
Length
1014 amino acids
Sequence
(BLAST)
(BLAST)
0001: MELVLFLLGI YWKHNKEELR HCHYREKSSN SLLFVTSSKF RRRRFAGEPS WFQKKIGCMN GIFQIFDRHH ILTSRRKSLT LGNAHVNSIN FERDSVDAIC
0101: QQRSAFQCQD SNLVSSNGLS EKLTRLSTEC SRVSFSSSCS SSSPLSSEVN REVQPEISAD DRVIFPESPT SDPVMSQGTG ARVGLDLRDV VRDSMYREAR
0201: GLSDVCRQNR REDSPRPYGL KQSRPVDFNE SCRALAKLRK TSHHYYNEVD MKDTSRYYVD SRGKSKSGKK LKELPRLSLD SRDHVDLKSG NKLSESFSRS
0301: SSMNKVSGSP KRPPSVVAKL MGLETLPGSP LSRDRFNMFD DNSDPFARSL RENSLNRSLR FSPSSPRSLG KDPAASSSSP RWRSSEFVMK PLSSLRYPIE
0401: PAPWKQTERN RFSQKQACRS VKSLSQSMEG KLKDLEVKHS GKDLRALKDI LEAMQSKGLF DTRKQQQCSN LEAQRDYELA DSATSKHDSI DLRNPVIPSN
0501: MRGPIVIMKP ARLVEKSGIP SSSLIPIHSL SGLNKTCREE PVNVRRSSTS RKAVKDRSPG NQRAEPCISS DKKSSSRNVM SSQVYKESTS KNSGPASSKL
0601: QQMKPEHDKR SRPPASPSDS SKLRKQISRQ PVESTTSPGG RRSRPRDQRS LQQNDGQLSQ MSNKSRTKIE ATLSIENGGK SPSVIEAAKA VVSNLIQNKS
0701: SPTFSEDGSS EHPSPVSVLN AEIYREIEPS PVKIQASEGS VNGSINSGVE HCEEDQWNPA YSFSKTTTSF SPEMNRKKLQ NVEHLVQKLK RLNSSHDETS
0801: QDYIASLCEN SDPDTDHRYI SEILLASGLL LRDLGSGLTT FQLHPSGHPI NPELFLVIEQ TKGCSSSSNE KINRKLVFDA VNEMLGKKLA FVESYVDPWM
0901: KQAKARKKVL SAQNLLKELC SEIEILQKQA KKRSENLLLL EEEEEEEEDF LKCILDEDMA IQSEKWTDFD DAIPGLVLDM ERLLFKDLVK EIVHGEIDRL
1001: QGNSRRQKTV LADE
0101: QQRSAFQCQD SNLVSSNGLS EKLTRLSTEC SRVSFSSSCS SSSPLSSEVN REVQPEISAD DRVIFPESPT SDPVMSQGTG ARVGLDLRDV VRDSMYREAR
0201: GLSDVCRQNR REDSPRPYGL KQSRPVDFNE SCRALAKLRK TSHHYYNEVD MKDTSRYYVD SRGKSKSGKK LKELPRLSLD SRDHVDLKSG NKLSESFSRS
0301: SSMNKVSGSP KRPPSVVAKL MGLETLPGSP LSRDRFNMFD DNSDPFARSL RENSLNRSLR FSPSSPRSLG KDPAASSSSP RWRSSEFVMK PLSSLRYPIE
0401: PAPWKQTERN RFSQKQACRS VKSLSQSMEG KLKDLEVKHS GKDLRALKDI LEAMQSKGLF DTRKQQQCSN LEAQRDYELA DSATSKHDSI DLRNPVIPSN
0501: MRGPIVIMKP ARLVEKSGIP SSSLIPIHSL SGLNKTCREE PVNVRRSSTS RKAVKDRSPG NQRAEPCISS DKKSSSRNVM SSQVYKESTS KNSGPASSKL
0601: QQMKPEHDKR SRPPASPSDS SKLRKQISRQ PVESTTSPGG RRSRPRDQRS LQQNDGQLSQ MSNKSRTKIE ATLSIENGGK SPSVIEAAKA VVSNLIQNKS
0701: SPTFSEDGSS EHPSPVSVLN AEIYREIEPS PVKIQASEGS VNGSINSGVE HCEEDQWNPA YSFSKTTTSF SPEMNRKKLQ NVEHLVQKLK RLNSSHDETS
0801: QDYIASLCEN SDPDTDHRYI SEILLASGLL LRDLGSGLTT FQLHPSGHPI NPELFLVIEQ TKGCSSSSNE KINRKLVFDA VNEMLGKKLA FVESYVDPWM
0901: KQAKARKKVL SAQNLLKELC SEIEILQKQA KKRSENLLLL EEEEEEEEDF LKCILDEDMA IQSEKWTDFD DAIPGLVLDM ERLLFKDLVK EIVHGEIDRL
1001: QGNSRRQKTV LADE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.