Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G176000.1 | Wheat | nucleus | 96.96 | 96.56 |
| TraesCS2B01G202300.1 | Wheat | nucleus | 94.97 | 95.37 |
| HORVU2Hr1G032710.2 | Barley | cytosol | 94.34 | 94.24 |
| Os07t0603300-01 | Rice | nucleus | 71.8 | 72.87 |
| KXG36646 | Sorghum | nucleus | 67.71 | 67.36 |
| Zm00001d006828_P001 | Maize | nucleus | 66.46 | 66.39 |
| Zm00001d022072_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 64.78 | 64.98 |
| Solyc02g089030.1.1 | Tomato | nucleus | 2.31 | 30.99 |
| CDX81888 | Canola | nucleus | 26.73 | 30.65 |
| CDY42438 | Canola | nucleus | 30.08 | 30.5 |
| Bra031037.1-P | Field mustard | nucleus | 26.62 | 30.42 |
| CDY59655 | Canola | nucleus | 26.62 | 30.42 |
| CDY49132 | Canola | nucleus | 28.93 | 30.03 |
| CDX83829 | Canola | cytosol | 24.63 | 28.62 |
| Bra008136.1-P | Field mustard | nucleus | 30.08 | 28.59 |
| Bra039160.1-P | Field mustard | nucleus | 24.32 | 28.29 |
| CDX85545 | Canola | nucleus | 23.69 | 28.14 |
| CDY43253 | Canola | nucleus | 24.42 | 28.0 |
| VIT_14s0068g00360.t01 | Wine grape | nucleus | 28.62 | 27.89 |
| CDY60473 | Canola | nucleus | 24.11 | 27.84 |
| CDX91979 | Canola | nucleus | 24.84 | 27.72 |
| KRH54713 | Soybean | nucleus | 32.08 | 27.72 |
| AT1G74160.1 | Thale cress | nucleus | 29.77 | 27.71 |
| KRH63201 | Soybean | nucleus | 31.97 | 27.7 |
| VIT_17s0000g05210.t01 | Wine grape | cytosol | 31.76 | 27.57 |
| CDX96710 | Canola | nucleus | 25.16 | 27.4 |
| Bra023526.1-P | Field mustard | nucleus | 24.32 | 27.26 |
| CDX69516 | Canola | nucleus | 25.58 | 27.23 |
| Bra008689.1-P | Field mustard | nucleus | 25.37 | 27.01 |
| Bra001034.1-P | Field mustard | nucleus | 24.21 | 26.95 |
| CDX74270 | Canola | nucleus | 24.0 | 26.72 |
| GSMUA_Achr4P07300_001 | Banana | cytosol | 25.16 | 26.49 |
| Solyc03g115000.2.1 | Tomato | nucleus | 29.87 | 26.1 |
| KRG93656 | Soybean | nucleus | 26.94 | 26.01 |
| AT5G15580.1 | Thale cress | nucleus | 25.26 | 26.0 |
| KRH18379 | Soybean | nucleus | 26.83 | 25.99 |
| PGSC0003DMT400063076 | Potato | nucleus | 29.66 | 25.92 |
| CDX90985 | Canola | nucleus | 23.06 | 25.79 |
| AT1G18620.2 | Thale cress | nucleus | 27.36 | 25.74 |
| AT3G02170.1 | Thale cress | nucleus | 24.32 | 25.64 |
| CDY26440 | Canola | nucleus | 23.79 | 25.42 |
| KRH03155 | Soybean | nucleus | 27.78 | 25.24 |
| KRH56796 | Soybean | nucleus | 27.78 | 25.21 |
| KRH01314 | Soybean | nucleus | 25.58 | 25.05 |
| TraesCS2D01G262900.1 | Wheat | cytosol | 27.78 | 24.63 |
| KRH45061 | Soybean | nucleus | 24.95 | 24.46 |
| PGSC0003DMT400003717 | Potato | nucleus | 24.21 | 24.44 |
| GSMUA_Achr4P14410_001 | Banana | nucleus | 22.01 | 24.19 |
| GSMUA_Achr7P26670_001 | Banana | nucleus | 17.51 | 24.1 |
| Solyc02g089050.2.1 | Tomato | nucleus | 17.51 | 22.75 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G183400.1 | EnsemblPlantsGene:TraesCS2D01G183400 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016049 | GO:GO:0040007 | GO:GO:0051513 | InterPro:DUF4378 | InterPro:LNG1/2 | ncoils:Coil |
| PANTHER:PTHR31680 | PANTHER:PTHR31680:SF4 | PFAM:PF14309 | SEG:seg | MapMan:13.4.1.2.2 | : |
Description
No Description!
Coordinates
chr2D:+:128394940..128399656
Molecular Weight (calculated)
104968.0 Da
IEP (calculated)
9.579
GRAVY (calculated)
-0.745
Length
954 amino acids
Sequence
(BLAST)
(BLAST)
001: MPAARRVLNV LADDMPEFDR RQMGCMAGIF QIFDRQRMLT ARRAGAGAGG RQPQQKRLPA GRTPPESSSN VPVQSSSTPK IILEKTLSKS MTENSSLSIE
101: SSRASCSSSS CSSFSSIDGS KSAQQELPYI NEELFPQGPP KSSPSLKGAD MDTKTAQPNV GFRDIVKDSI NRDSGGLTVM TTANGARRNA QYKDSPRPLL
201: LSKSMDGTYV ISIDRTTKAV PANVVESSRR FPEQSRFSCD DRRLLRPAET QEAKKPSSTR AKELPRLSLD SRKESLSPSS RLKSYSYRRT DDSLLDALKP
301: QDSPGHRRSN TVIAKLMGLE EAPDAMGMLV ADSYEPARSP RTAAQATRSE RPSRSPRRDC QDACGSLPKN EPSALKTRPP PRILTEPAPW RQQERGVSVT
401: NSKASQCRDA EARPRTASLY ADIERRLGGL EFSECNKDFR ALRILGALHA KDAKHQNNDG DAASVAFQSQ EEDSATTSSR SFQSPIVVMK PARTTEKPGV
501: SVAPLAGLRG LRKLQPRDSS FTDKSEASTN EKIHSRVARA QSKSDEPASR ASSPRPTGSS SPRLVQRKAE SERRSRPPVS PKSPSKKSNE AASPRGRTRS
601: KPSQVKSNRD NEVSQSPGRR ISLAKQIDVS IMDCQNPLAA RSSFIDPNTP SQKSPSSILG SDHKIHSLEN ALSPVSVLDT SFYHKSISDS FKDGETHTSD
701: ECWNSNSLPD TPQSKTSSEV SQIKPENLEA LIQKLEQLQS MNDEAANSKD HQYIYEILLA SGLLHKELSF AAMPAQLSPS SCPINPELFL ILEQTKPHFI
801: SATQAVTGAK KSSDPNMEKL HRRIVFDLVN EIIAQKMNIY SSASGTAKLL RSRKLSGWRL FKELCTEVDR LLSESSAAIC SEEDEDENIP LSEDALYEMK
901: DWGSPEGELQ GMVLDIERSI FRDLIDEVIG GEATERMQAG QWKLRRQLSF SSIN
101: SSRASCSSSS CSSFSSIDGS KSAQQELPYI NEELFPQGPP KSSPSLKGAD MDTKTAQPNV GFRDIVKDSI NRDSGGLTVM TTANGARRNA QYKDSPRPLL
201: LSKSMDGTYV ISIDRTTKAV PANVVESSRR FPEQSRFSCD DRRLLRPAET QEAKKPSSTR AKELPRLSLD SRKESLSPSS RLKSYSYRRT DDSLLDALKP
301: QDSPGHRRSN TVIAKLMGLE EAPDAMGMLV ADSYEPARSP RTAAQATRSE RPSRSPRRDC QDACGSLPKN EPSALKTRPP PRILTEPAPW RQQERGVSVT
401: NSKASQCRDA EARPRTASLY ADIERRLGGL EFSECNKDFR ALRILGALHA KDAKHQNNDG DAASVAFQSQ EEDSATTSSR SFQSPIVVMK PARTTEKPGV
501: SVAPLAGLRG LRKLQPRDSS FTDKSEASTN EKIHSRVARA QSKSDEPASR ASSPRPTGSS SPRLVQRKAE SERRSRPPVS PKSPSKKSNE AASPRGRTRS
601: KPSQVKSNRD NEVSQSPGRR ISLAKQIDVS IMDCQNPLAA RSSFIDPNTP SQKSPSSILG SDHKIHSLEN ALSPVSVLDT SFYHKSISDS FKDGETHTSD
701: ECWNSNSLPD TPQSKTSSEV SQIKPENLEA LIQKLEQLQS MNDEAANSKD HQYIYEILLA SGLLHKELSF AAMPAQLSPS SCPINPELFL ILEQTKPHFI
801: SATQAVTGAK KSSDPNMEKL HRRIVFDLVN EIIAQKMNIY SSASGTAKLL RSRKLSGWRL FKELCTEVDR LLSESSAAIC SEEDEDENIP LSEDALYEMK
901: DWGSPEGELQ GMVLDIERSI FRDLIDEVIG GEATERMQAG QWKLRRQLSF SSIN
001: MAAKLLHTLA DENSDLQKKI GCMNGIFQIF DRHHILTSRR KSLTLGNAHV NSINFERDSV DAICQQRSAF QCQDSNLVSS NGLSEKLTRL STECSRVSFS
101: SSCSSSSPLS SEVNREVQPE ISADDRVIFP ESPTSDPVMS QGTGARVGLD LRDVVRDSMY REARGLSDVC RQNRREDSPR PYGLKQSRPV DFNESCRALA
201: KLRKTSHHYY NEVDMKDTSR YYVDSRGKSK SGKKLKELPR LSLDSRDHVD LKSGNKLSES FSRSSSMNKV SGSPKRPPSV VAKLMGLETL PGSPLSRDRF
301: NMFDDNSDPF ARSLRENSLN RSLRFSPSSP RSLGKDPAAS SSSPRWRSSE FVMKPLSSLR YPIEPAPWKQ TERNRFSQKQ ACRSVKSLSQ SMEGKLKDLE
401: VKHSGKDLRA LKDILEAMQS KGLFDTRKQQ QCSNLEAQRD YELADSATSK HDSIDLRNPV IPSNMRGPIV IMKPARLVEK SGIPSSSLIP IHSLSGLNKT
501: CREEPVNVRR SSTSRKAVKD RSPGNQRAEP CISSDKKSSS RNVMSSQVYK ESTSKNSGPA SSKLQQMKPE HDKRSRPPAS PSDSSKLRKQ ISRQPVESTT
601: SPGGRRSRPR DQRSLQQNDG QLSQMSNKSR TKIEATLSIE NGGKSPSVIE AAKAVVSNLI QNKSSPTFSE DGSSEHPSPV SVLNAEIYRE IEPSPVKIQA
701: SEGSVNGSIN SGVEHCEEDQ WNPAYSFSKT TTSFSPEMNR KKLQNVEHLV QKLKRLNSSH DETSQDYIAS LCENSDPDTD HRYISEILLA SGLLLRDLGS
801: GLTTFQLHPS GHPINPELFL VIEQTKGCSS SSNEKINRKL VFDAVNEMLG KKLAFVESYV DPWMKQAKAR KKVLSAQNLL KELCSEIEIL QKQAKKRSEN
901: LLLLEEEEEE EEDFLKCILD EDMAIQSEKW TDFDDAIPGL VLDMERLLFK DLVKEIVHGE IDRLQGNSRR QKTVLADE
101: SSCSSSSPLS SEVNREVQPE ISADDRVIFP ESPTSDPVMS QGTGARVGLD LRDVVRDSMY REARGLSDVC RQNRREDSPR PYGLKQSRPV DFNESCRALA
201: KLRKTSHHYY NEVDMKDTSR YYVDSRGKSK SGKKLKELPR LSLDSRDHVD LKSGNKLSES FSRSSSMNKV SGSPKRPPSV VAKLMGLETL PGSPLSRDRF
301: NMFDDNSDPF ARSLRENSLN RSLRFSPSSP RSLGKDPAAS SSSPRWRSSE FVMKPLSSLR YPIEPAPWKQ TERNRFSQKQ ACRSVKSLSQ SMEGKLKDLE
401: VKHSGKDLRA LKDILEAMQS KGLFDTRKQQ QCSNLEAQRD YELADSATSK HDSIDLRNPV IPSNMRGPIV IMKPARLVEK SGIPSSSLIP IHSLSGLNKT
501: CREEPVNVRR SSTSRKAVKD RSPGNQRAEP CISSDKKSSS RNVMSSQVYK ESTSKNSGPA SSKLQQMKPE HDKRSRPPAS PSDSSKLRKQ ISRQPVESTT
601: SPGGRRSRPR DQRSLQQNDG QLSQMSNKSR TKIEATLSIE NGGKSPSVIE AAKAVVSNLI QNKSSPTFSE DGSSEHPSPV SVLNAEIYRE IEPSPVKIQA
701: SEGSVNGSIN SGVEHCEEDQ WNPAYSFSKT TTSFSPEMNR KKLQNVEHLV QKLKRLNSSH DETSQDYIAS LCENSDPDTD HRYISEILLA SGLLLRDLGS
801: GLTTFQLHPS GHPINPELFL VIEQTKGCSS SSNEKINRKL VFDAVNEMLG KKLAFVESYV DPWMKQAKAR KKVLSAQNLL KELCSEIEIL QKQAKKRSEN
901: LLLLEEEEEE EEDFLKCILD EDMAIQSEKW TDFDDAIPGL VLDMERLLFK DLVKEIVHGE IDRLQGNSRR QKTVLADE
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1); Has 1987 Blast hits to 1263 proteins in 207 species: Archae - 0; Bacteria - 172; Metazoa - 665; Fungi - 149; Plants - 271; Viruses - 6; Other Eukaryotes /.../ (source: NCBI BLink). [Source:TAIR;Acc:AT1G18620]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.