Factsheet for GSMUA_Achr7P26670_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g089030.1.1	Tomato	nucleus	3.46	33.8
GSMUA_Achr4P07300_001	Banana	cytosol	31.31	23.95
GSMUA_Achr4P14410_001	Banana	nucleus	28.72	22.93
CDX83829	Canola	cytosol	24.39	20.58
CDY49132	Canola	nucleus	27.27	20.57
GSMUA_Achr4P32860_001	Banana	nucleus	28.86	20.47
CDY42438	Canola	nucleus	27.27	20.09
CDX81888	Canola	nucleus	24.1	20.07
Bra008136.1-P	Field mustard	nucleus	29.0	20.02
CDY60473	Canola	nucleus	23.81	19.98
Bra031037.1-P	Field mustard	nucleus	23.95	19.88
CDY59655	Canola	nucleus	23.95	19.88
Bra023526.1-P	Field mustard	nucleus	24.39	19.86
CDX85545	Canola	nucleus	22.94	19.8
CDY43253	Canola	nucleus	23.67	19.71
AT1G74160.1	Thale cress	nucleus	29.0	19.61
Bra039160.1-P	Field mustard	nucleus	23.09	19.51
VIT_14s0068g00360.t01	Wine grape	nucleus	27.42	19.41
CDX90985	Canola	nucleus	23.81	19.34
CDX91979	Canola	nucleus	23.67	19.18
CDX96710	Canola	nucleus	24.24	19.18
CDX74270	Canola	nucleus	23.38	18.9
Bra008689.1-P	Field mustard	nucleus	24.39	18.86
KRH56796	Soybean	nucleus	28.57	18.84
CDX69516	Canola	nucleus	24.24	18.75
VIT_17s0000g05210.t01	Wine grape	cytosol	29.73	18.74
Bra001034.1-P	Field mustard	nucleus	23.09	18.67
AT5G15580.1	Thale cress	nucleus	24.96	18.66
KRH63201	Soybean	nucleus	29.44	18.53
Solyc03g115000.2.1	Tomato	nucleus	29.15	18.5
PGSC0003DMT400063076	Potato	nucleus	29.15	18.5
KRH03155	Soybean	nucleus	27.99	18.48
AT3G02170.1	Thale cress	nucleus	23.95	18.34
Os07t0603300-01	Rice	nucleus	24.82	18.3
KRH54713	Soybean	nucleus	28.72	18.03
TraesCS2B01G202300.1	Wheat	nucleus	24.68	18.0
AT1G18620.2	Thale cress	nucleus	26.26	17.95
Os03t0418700-02	Rice	nucleus	23.81	17.82
KRH45061	Soybean	nucleus	24.96	17.78
HORVU2Hr1G032710.2	Barley	cytosol	24.39	17.7
CDY26440	Canola	nucleus	22.8	17.69
TraesCS2A01G176000.1	Wheat	nucleus	24.39	17.64
KXG36646	Sorghum	nucleus	24.24	17.52
TraesCS2D01G183400.1	Wheat	nucleus	24.1	17.51
Zm00001d022072_P001	Maize	cytosol, mitochondrion, nucleus, plastid	23.95	17.46
Zm00001d006828_P001	Maize	nucleus	23.67	17.17
KRH18379	Soybean	nucleus	24.1	16.95
KRH01314	Soybean	nucleus	23.67	16.84
PGSC0003DMT400003717	Potato	nucleus	22.8	16.72
KRG93656	Soybean	nucleus	23.81	16.7
KXG39125	Sorghum	plastid	21.36	16.21
Solyc02g089050.2.1	Tomato	nucleus	14.0	13.22

Protein Annotations

EnsemblPlants:GSMUA_Achr7P26670_001	EnsemblPlants:GSMUA_Achr7T26670_001	EnsemblPlantsGene:GSMUA_Achr7G26670_001	GO:GO:0008150	GO:GO:0009653	GO:GO:0009987
GO:GO:0016043	GO:GO:0016049	GO:GO:0040007	GO:GO:0051513	InterPro:DUF3741-assoc	InterPro:DUF4378
InterPro:LNG1/2	PANTHER:PTHR31680	PANTHER:PTHR31680:SF3	PFAM:PF14309	PFAM:PF14383	SEG:seg
UniParc:UPI0002954F1D	UniProt:M0TL03	MapMan:13.4.1.2.2	:	:	:

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_68.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr7G26670_001]

Coordinates

chr7:-:27926664..27928745

Molecular Weight (calculated)

78708.1 Da

IEP (calculated)

10.611

GRAVY (calculated)

-1.002

Length

693 amino acids

Sequence
(BLAST)

001: MQEKKLSKNL KGNRRVPMES SLASFSSSSS SSFYSHEYKK SSQREAFVRT FFPERSLENS PMFRNSQRRL SMDSQDYCKS AARLREIPRL SLESRESLLR
101: NSNFGTETSL FLGDLDRTKT TPRVSKASDL LQDRSRQVRH PSVVAKLMGL DKMPEMNPAA ARKDCVPFHE PRPKGTRDAR SDQSPRSVQS RDLNLDRLLK
201: LNSSIMTDQM QQQTEPIYKR AESRIKDKDL RALKQMVHAM REKRLAQAKK RNGHTCKTSP PEDDADRPPT RSNPNPRSPK ARKQPAKAGG APKSLEPPIA
301: IMKSEMSPGA RDSVLPEGLP TPAKLRTSST DDRRRASANN HGDRDHTPRV RLRETDKQFN RRATLRSNQT QGISKSQQSL GTTLNPKLQQ RRKEAEKKSC
401: PPTPYLNKAQ AQSTNRQTLE SVSPRSKPRL KQSQVRKNKD QIDDSIRETR GLRCRDDEVS PCSYKSRCSA LQSAVLQQHI ESPSSRAAHN PALVLNQKEL
501: TNIDAMHNPD HKYVTEMLLA TGFLNKDFRF GQASSVPFQR LSSDQAINPD LFSVLEQPKH GCPSNHDRRN HRKLVFDVVN EILAHKMESF SNGLLQTRKP
601: SGQHLLAELC SEIERLQAES TRSTTSEDDV NYISGKEVLH RSEWVDFDME QPRVALEIEK LISEDLIHET VSDATEAVLR VKTGKLRRQQ SAQ

Best Arabidopsis Sequence Match ( AT1G18620.5 )
(BLAST)

001: MSQGTGARVG LDLRDVVRDS MYREARGLSD VCRQNRREDS PRPYGLKQSR PVDFNESCRA LAKLRKTSHH YYNEVDMKDT SRYYVDSRGK SKSGKKLKEL
101: PRLSLDSRDH VDLKSGNKLS ESFSRSSSMN KVSGSPKRPP SVVAKLMGLE TLPGSPLSRD RFNMFDDNSD PFARSLRENS LNRSLRFSPS SPRSLGKDPA
201: ASSSSPRWRS SEFVMKPLSS LRYPIEPAPW KQTERNRFSQ KQACRSVKSL SQSMEGKLKD LEVKHSGKDL RALKDILEAM QSKGLFDTRK QQQCSNLEAQ
301: RDYELADSAT SKHDSIDLRN PVIPSNMRGP IVIMKPARLV EKSGIPSSSL IPIHSLSGLN KTCREEPVNV RRSSTSRKAV KDRSPGNQRA EPCISSDKKS
401: SSRNVMSSQV YKESTSKNSG PASSKLQQMK PEHDKRSRPP ASPSDSSKLR KQISRQPVES TTSPGGRRSR PRDQRSLQQN DGQLSQMSNK SRTKIEATLS
501: IENGGKSPSV IEAAKAVVSN LIQNKSSPTF SEDGSSEHPS PVSVLNAEIY REIEPSPVKI QASEGSVNGS INSGVEHCEE DQWNPAYSFS KTTTSFSPEM
601: NRKKLQNVEH LVQKLKRLNS SHDETSQDYI ASLCENSDPD TDHRYISEIL LASGLLLRDL GSGLTTFQLH PSGHPINPEL FLVIEQTKGC SSSSNEKINR
701: KLVFDAVNEM LGKKLAFVES YVDPWMKQAK ARKKVLSAQN LLKELCSEIE ILQKQAKKRS ENLLLLEEEE EEEEDFLKCI LDEDMAIQSE KWTDFDDAIP
801: GLVLDMERLL FKDLVKEIVH GEIDRLQGNS RRQKTVLADE

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1); Has 1987 Blast hits to 1263 proteins in 207 species: Archae - 0; Bacteria - 172; Metazoa - 665; Fungi - 149; Plants - 271; Viruses - 6; Other Eukaryotes /.../ (source: NCBI BLink). [Source:TAIR;Acc:AT1G18620]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.