Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74270 | Canola | nucleus | 87.49 | 87.28 |
| CDY43253 | Canola | nucleus | 65.85 | 67.67 |
| AT3G02170.1 | Thale cress | nucleus | 69.71 | 65.86 |
| CDY60473 | Canola | nucleus | 63.51 | 65.74 |
| CDX85545 | Canola | nucleus | 48.07 | 51.18 |
| CDX69516 | Canola | nucleus | 52.05 | 49.67 |
| CDX90985 | Canola | nucleus | 48.77 | 48.89 |
| CDY26440 | Canola | nucleus | 49.59 | 47.48 |
| VIT_14s0068g00360.t01 | Wine grape | nucleus | 35.32 | 30.85 |
| CDY42438 | Canola | nucleus | 33.1 | 30.07 |
| CDY49132 | Canola | nucleus | 31.93 | 29.71 |
| CDX83829 | Canola | cytosol | 26.2 | 27.28 |
| KRH45061 | Soybean | nucleus | 30.99 | 27.24 |
| CDX81888 | Canola | nucleus | 26.2 | 26.92 |
| CDX96710 | Canola | nucleus | 27.49 | 26.83 |
| KRH01314 | Soybean | nucleus | 30.53 | 26.8 |
| KRH18379 | Soybean | nucleus | 30.64 | 26.6 |
| PGSC0003DMT400003717 | Potato | nucleus | 29.36 | 26.56 |
| Solyc02g089050.2.1 | Tomato | nucleus | 22.57 | 26.29 |
| CDY59655 | Canola | nucleus | 25.61 | 26.23 |
| KRG93656 | Soybean | nucleus | 30.18 | 26.11 |
| TraesCS2D01G183400.1 | Wheat | nucleus | 27.72 | 24.84 |
| GSMUA_Achr4P32860_001 | Banana | nucleus | 28.3 | 24.77 |
| TraesCS2B01G202300.1 | Wheat | nucleus | 27.49 | 24.74 |
| HORVU2Hr1G032710.2 | Barley | cytosol | 27.49 | 24.61 |
| TraesCS2A01G176000.1 | Wheat | nucleus | 27.37 | 24.43 |
| Os07t0603300-01 | Rice | nucleus | 26.55 | 24.15 |
| Os03t0418700-02 | Rice | nucleus | 26.08 | 24.08 |
| TraesCS2B01G281200.2 | Wheat | cytosol | 29.94 | 24.02 |
| Os07t0109400-01 | Rice | nucleus | 30.41 | 23.88 |
| EER98557 | Sorghum | nucleus | 30.06 | 23.71 |
| KXG36646 | Sorghum | nucleus | 26.55 | 23.67 |
| GSMUA_Achr7P26670_001 | Banana | nucleus | 19.18 | 23.67 |
| Zm00001d006828_P001 | Maize | nucleus | 26.43 | 23.66 |
| TraesCS2D01G262900.1 | Wheat | cytosol | 29.71 | 23.61 |
| HORVU2Hr1G063820.1 | Barley | cytosol | 29.59 | 23.56 |
| Zm00001d022072_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 26.2 | 23.55 |
| TraesCS2A01G261000.1 | Wheat | cytosol | 29.36 | 23.39 |
| Zm00001d019700_P006 | Maize | nucleus | 28.89 | 23.19 |
| GSMUA_Achr4P07300_001 | Banana | cytosol | 23.98 | 22.63 |
| Solyc02g089030.1.1 | Tomato | nucleus | 1.87 | 22.54 |
| Zm00001d005297_P006 | Maize | nucleus | 28.89 | 22.45 |
| KXG39125 | Sorghum | plastid | 23.63 | 22.12 |
| GSMUA_Achr4P14410_001 | Banana | nucleus | 20.35 | 20.05 |
Protein Annotations
| EnsemblPlants:CDX91979 | EnsemblPlantsGene:GSBRNA2T00153628001 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016049 | GO:GO:0040007 | GO:GO:0051513 | InterPro:DUF4378 | InterPro:LNG1/2 | ncoils:Coil |
| PANTHER:PTHR31680 | PANTHER:PTHR31680:SF4 | PFAM:PF14309 | ProteinID:CDX91979 | ProteinID:CDX91979.1 | SEG:seg |
| UniParc:UPI0004EF08F5 | MapMan:13.4.1.2.2 | : | : | : | : |
Description
BnaC03g32810D
Coordinates
chrLK031870:-:1100690..1104105
Molecular Weight (calculated)
96284.8 Da
IEP (calculated)
10.194
GRAVY (calculated)
-0.805
Length
855 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAKLLYNLS DENPNLNKQF GCMNGILQVF YRQHYPARPV SGHVEKSLPP GERKDLVSEI NMESDKETGR ITKKKKKKSA VKDKHRASSE SSSRHSFSSS
101: PRSSSFSSAE VSTATSQFDQ PGENLTREQL NAGPMMPFDI KELVKGSINR EVRTRRDETT AAFTQHQQQQ QPNSARASMM LLKEASLRSP SRSSSEWNEG
201: RGMAARLRES PRFSYDEREM RNKTGSKLKE TPRLSLDSRS SCPPEEPVTM SHRRSNSSVV AKLMGLEVIA DNFDTEQRNE NRFCDSPRPM SRVEPTSLGR
301: SRSVGSIKKL PAASKFPLEP APWKQMKAGD AALTVYGEIQ KRLTQLEFKK AGKDLRALKQ ILEAMEKTQQ LMDGSKDNTT LMQRTQQPVP AATSPAMNFK
401: PSSIVVMKPA APVSTSLPTV NVGNPRQIRK VTSGKQNAMD LTPRPGLYKG QLDSTKSTSP KTLRSRQALS GRSQQQSVSP RRQPKKLGFE RQSPPTTPKS
501: EPGKIQRQLG RQQMESVSPR RKQGIKPRST LQQPDERLGH ASSDLRSLRT DSNISLRSNV DVEVTSRRQP ERNCDFPELH TPKQRSPDFG IKQDRPSLKP
601: LKVTVEQPSP VSVLDAAFDE EDSPSPVRKI SLSFKDDDAL RAEEPVWIKK PVSICRSIIL PENKRNPTQK DSDLLKCFSE EDASGDHKYI SEILLASGLL
701: RDLEYSMISI QLNKARLPIN PGLFFILEQN KGMGLRQHQT EIIRRKLIFD TVNEILAQRF TAEGCTKPRL TANPITTMEN ISKGEQLLKT LCLEIDRLQE
801: NNSQCVLEDD KEDLTWNDLQ CHGMNLKAFE GETPGIVLDI ERMIFRDLVN EVCFY
101: PRSSSFSSAE VSTATSQFDQ PGENLTREQL NAGPMMPFDI KELVKGSINR EVRTRRDETT AAFTQHQQQQ QPNSARASMM LLKEASLRSP SRSSSEWNEG
201: RGMAARLRES PRFSYDEREM RNKTGSKLKE TPRLSLDSRS SCPPEEPVTM SHRRSNSSVV AKLMGLEVIA DNFDTEQRNE NRFCDSPRPM SRVEPTSLGR
301: SRSVGSIKKL PAASKFPLEP APWKQMKAGD AALTVYGEIQ KRLTQLEFKK AGKDLRALKQ ILEAMEKTQQ LMDGSKDNTT LMQRTQQPVP AATSPAMNFK
401: PSSIVVMKPA APVSTSLPTV NVGNPRQIRK VTSGKQNAMD LTPRPGLYKG QLDSTKSTSP KTLRSRQALS GRSQQQSVSP RRQPKKLGFE RQSPPTTPKS
501: EPGKIQRQLG RQQMESVSPR RKQGIKPRST LQQPDERLGH ASSDLRSLRT DSNISLRSNV DVEVTSRRQP ERNCDFPELH TPKQRSPDFG IKQDRPSLKP
601: LKVTVEQPSP VSVLDAAFDE EDSPSPVRKI SLSFKDDDAL RAEEPVWIKK PVSICRSIIL PENKRNPTQK DSDLLKCFSE EDASGDHKYI SEILLASGLL
701: RDLEYSMISI QLNKARLPIN PGLFFILEQN KGMGLRQHQT EIIRRKLIFD TVNEILAQRF TAEGCTKPRL TANPITTMEN ISKGEQLLKT LCLEIDRLQE
801: NNSQCVLEDD KEDLTWNDLQ CHGMNLKAFE GETPGIVLDI ERMIFRDLVN EVCFY
001: MSAKLLYNLS DENPNLNKQF GCMNGIFQVF YRQHCPATPV TVSGGAEKSL PPGERRGSVG ETNMESDKET ERSSTKKKKS AAKEKHRVSF ESSSRPSFSS
101: SPRSSSFSSA EVSTTASQFD QPGENLIREQ PNGGLMMPYD LKELVKGSIN REIRTRGEEA SFTQQQQPIS ARSSMLLLKE SSLRSPCRSS NEWNEGRGAA
201: MKFKESHRLS YDEREMRNNG FRVGSKLKET PRLSLDSRSN SFRSPRADAA RSSCPEEPAT MTHRRSSSSV VAKLMGLEVI ADNSDTEQRR ENRFCDSPRP
301: MSRVEPTALQ RSRSVDSIKR IPASAASKFP MEPAPWKQMK AGDSALTVYG EIQKRLTQLE FKKSGKDLRA LKQILEAMEK TQQLIDESRD DGTLSTTTLM
401: QRTHKPVSAA TSPARNFKSS SIVVMKSAAP VSTSPLPQNV TLPNVKVGNS RQTRKVTSGK QNAMDLTPRP GLYKGQLDST KSNSPKTVRS RQALAADAGS
501: MTKSGRSQQH SVSPRTQPKK LGFEKQTRPT TPKSEPGKRQ LGRQQTEVAS PRRKQMIKPH STLQQPDDRL SDARSDLRSL RSDSNISLGS NVDIEVTSRH
601: RLERNCDFPE QHTPKQRSPD FGIKQDRPSL KPLKVTVEQP SPVSVLDAVF DEEDSPSPVR KISLSFKEED ALRSEESEWI NKPTSFCRSV PFPQSNRGPM
701: KPSSDHFECS PEEGADFKSG NHKYILEILL ASGILRDLEY SMISFQLHQT RLPINPGLFF ILEQNKASNV TLPDNKHRGR GFRQQQTNPT ETIRRKLVFD
801: TVNEILARKF TAEGCIKPRL IANPLKKLEK ISKEEQLLQT LCSEIDRLQQ NNSNCILEDD EEDIIWEDLQ SQSMNLKEFE GETPGIVLDI ERMIFRDLVN
901: EVCFC
101: SPRSSSFSSA EVSTTASQFD QPGENLIREQ PNGGLMMPYD LKELVKGSIN REIRTRGEEA SFTQQQQPIS ARSSMLLLKE SSLRSPCRSS NEWNEGRGAA
201: MKFKESHRLS YDEREMRNNG FRVGSKLKET PRLSLDSRSN SFRSPRADAA RSSCPEEPAT MTHRRSSSSV VAKLMGLEVI ADNSDTEQRR ENRFCDSPRP
301: MSRVEPTALQ RSRSVDSIKR IPASAASKFP MEPAPWKQMK AGDSALTVYG EIQKRLTQLE FKKSGKDLRA LKQILEAMEK TQQLIDESRD DGTLSTTTLM
401: QRTHKPVSAA TSPARNFKSS SIVVMKSAAP VSTSPLPQNV TLPNVKVGNS RQTRKVTSGK QNAMDLTPRP GLYKGQLDST KSNSPKTVRS RQALAADAGS
501: MTKSGRSQQH SVSPRTQPKK LGFEKQTRPT TPKSEPGKRQ LGRQQTEVAS PRRKQMIKPH STLQQPDDRL SDARSDLRSL RSDSNISLGS NVDIEVTSRH
601: RLERNCDFPE QHTPKQRSPD FGIKQDRPSL KPLKVTVEQP SPVSVLDAVF DEEDSPSPVR KISLSFKEED ALRSEESEWI NKPTSFCRSV PFPQSNRGPM
701: KPSSDHFECS PEEGADFKSG NHKYILEILL ASGILRDLEY SMISFQLHQT RLPINPGLFF ILEQNKASNV TLPDNKHRGR GFRQQQTNPT ETIRRKLVFD
801: TVNEILARKF TAEGCIKPRL IANPLKKLEK ISKEEQLLQT LCSEIDRLQQ NNSNCILEDD EEDIIWEDLQ SQSMNLKEFE GETPGIVLDI ERMIFRDLVN
901: EVCFC
Arabidopsis Description
LNG2Protein LONGIFOLIA 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S823]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.