Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008689.1-P | Field mustard | nucleus | 96.88 | 96.88 |
| CDY26440 | Canola | nucleus | 84.04 | 84.32 |
| AT5G15580.1 | Thale cress | nucleus | 80.13 | 77.45 |
| CDX85545 | Canola | nucleus | 64.17 | 71.61 |
| CDX90985 | Canola | nucleus | 64.62 | 67.88 |
| CDY60473 | Canola | nucleus | 48.66 | 52.78 |
| CDX91979 | Canola | nucleus | 49.67 | 52.05 |
| CDY43253 | Canola | nucleus | 47.99 | 51.68 |
| CDX74270 | Canola | nucleus | 48.55 | 50.76 |
| Solyc02g089030.1.1 | Tomato | nucleus | 2.79 | 35.21 |
| VIT_14s0068g00360.t01 | Wine grape | nucleus | 35.6 | 32.58 |
| CDY42438 | Canola | nucleus | 31.36 | 29.86 |
| CDY49132 | Canola | nucleus | 30.58 | 29.82 |
| KRH01314 | Soybean | nucleus | 31.7 | 29.16 |
| CDY59655 | Canola | nucleus | 27.01 | 28.98 |
| CDX81888 | Canola | nucleus | 26.79 | 28.85 |
| KRH45061 | Soybean | nucleus | 30.8 | 28.37 |
| CDX83829 | Canola | cytosol | 25.67 | 28.01 |
| CDX96710 | Canola | nucleus | 26.45 | 27.05 |
| KRG93656 | Soybean | nucleus | 29.8 | 27.02 |
| KRH18379 | Soybean | nucleus | 29.46 | 26.8 |
| PGSC0003DMT400003717 | Potato | nucleus | 27.9 | 26.45 |
| GSMUA_Achr4P32860_001 | Banana | nucleus | 27.9 | 25.59 |
| TraesCS2D01G183400.1 | Wheat | nucleus | 27.23 | 25.58 |
| HORVU2Hr1G032710.2 | Barley | cytosol | 27.23 | 25.55 |
| TraesCS2A01G176000.1 | Wheat | nucleus | 27.23 | 25.47 |
| TraesCS2B01G202300.1 | Wheat | nucleus | 26.9 | 25.37 |
| Solyc02g089050.2.1 | Tomato | nucleus | 20.65 | 25.2 |
| Os07t0603300-01 | Rice | nucleus | 25.89 | 24.68 |
| TraesCS2B01G281200.2 | Wheat | cytosol | 29.35 | 24.67 |
| KXG36646 | Sorghum | nucleus | 26.12 | 24.4 |
| TraesCS2D01G262900.1 | Wheat | cytosol | 29.13 | 24.26 |
| GSMUA_Achr7P26670_001 | Banana | nucleus | 18.75 | 24.24 |
| HORVU2Hr1G063820.1 | Barley | cytosol | 28.91 | 24.12 |
| TraesCS2A01G261000.1 | Wheat | cytosol | 28.68 | 23.95 |
| Os07t0109400-01 | Rice | nucleus | 29.02 | 23.88 |
| Zm00001d006828_P001 | Maize | nucleus | 25.33 | 23.77 |
| Os03t0418700-02 | Rice | nucleus | 24.55 | 23.76 |
| GSMUA_Achr4P07300_001 | Banana | cytosol | 24.0 | 23.73 |
| Zm00001d022072_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 25.11 | 23.66 |
| Zm00001d019700_P006 | Maize | nucleus | 28.01 | 23.57 |
| EER98557 | Sorghum | nucleus | 28.35 | 23.43 |
| Zm00001d005297_P006 | Maize | nucleus | 27.79 | 22.64 |
| GSMUA_Achr4P14410_001 | Banana | nucleus | 21.09 | 21.77 |
| KXG39125 | Sorghum | plastid | 21.76 | 21.36 |
Protein Annotations
| EnsemblPlants:CDX69516 | EnsemblPlantsGene:GSBRNA2T00135512001 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016049 | GO:GO:0040007 | GO:GO:0051513 | InterPro:DUF4378 | InterPro:LNG1/2 | ncoils:Coil |
| PANTHER:PTHR31680 | PANTHER:PTHR31680:SF4 | PFAM:PF14309 | ProteinID:CDX69516 | ProteinID:CDX69516.1 | SEG:seg |
| UniParc:UPI0004EE8A4E | MapMan:13.4.1.2.2 | : | : | : | : |
Description
BnaA10g18650D
Coordinates
chrLK031790:+:577299..581091
Molecular Weight (calculated)
99572.9 Da
IEP (calculated)
9.826
GRAVY (calculated)
-0.814
Length
896 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAKLLYNLS DENPNLNKQF GCMNGIFQVF YRQHYPARRV SVAGDELKSL PSGKTSDNVG VTNGSTDKKE TEKSKKKKAA KEKQKVVSSE SSSRLSFSSS
101: PCSSSFSSAD ISTTTSQFEQ PMSNGETPAR EPTYGSPRWG GLVMSSDLRE LVRSSIHKET RTRVEEEALS QQPKSARANV SLLKELSPSR SSNEWSEGRR
201: VVKLKDSPRF SYDEREARKT GAKFKETPRL SLDSRSNSFR SAKSSCSPEP QELVTGHRRT TSSVIAKLMG LDVVSDEPVT DQSRENHFCD SPRPAPRVEA
301: DLPRSRGSDS FKKMMPAAKF PAKTAPWTQA DGARNQVKAA DAAATLTVYG EIQKRLSQLE FKKSEKDLRA LQQILEAMEK TQQLMSKDDD NSSLSSTNFM
401: QPSPSSKSIR SSSIVVMKAA SAPVFKETGN SSSTSSSPRS VALPNVKVSN QKGTTRKQSA MDVTPRPATK NTSTRPLQSK IEMAKPGKSS VSPRTQAKKL
501: GFEKQSRPTS PKPEPNKNQR QQLSRQQTES PSPRRKPGMK SRGLQQSEDR SSDESSDLRS LRSDSNVSSA SNFDIEVTSR YKCDLTEQHT PKQRSPELGM
601: RSLPKPLKIT VEQPSPVSIL DVAFDDDESP SPVRKISIVF KDDDHIRSEE SLWMNKHNNL CRSIVWPESN TSLNQPDAAL TESFMEEGAD LRNGDRKYIS
701: KILSASGLLK DIDYSMLSIQ LHQAHLPINP SLFFVLEQNK TSNVTHRGRG FGQQTANLIG RSRRKLVFDT VNEILARKFA AEGCTKQPYI TSSISPLMKT
801: DKSSRGKELL ETLCSEIDRL QDNSNCILDE DDEDLIWEDL QSQGMNWKEI EGETPGLVLD IERLIFKDLI SEVVTSEVAA SPGNKLSGQP RQLFHC
101: PCSSSFSSAD ISTTTSQFEQ PMSNGETPAR EPTYGSPRWG GLVMSSDLRE LVRSSIHKET RTRVEEEALS QQPKSARANV SLLKELSPSR SSNEWSEGRR
201: VVKLKDSPRF SYDEREARKT GAKFKETPRL SLDSRSNSFR SAKSSCSPEP QELVTGHRRT TSSVIAKLMG LDVVSDEPVT DQSRENHFCD SPRPAPRVEA
301: DLPRSRGSDS FKKMMPAAKF PAKTAPWTQA DGARNQVKAA DAAATLTVYG EIQKRLSQLE FKKSEKDLRA LQQILEAMEK TQQLMSKDDD NSSLSSTNFM
401: QPSPSSKSIR SSSIVVMKAA SAPVFKETGN SSSTSSSPRS VALPNVKVSN QKGTTRKQSA MDVTPRPATK NTSTRPLQSK IEMAKPGKSS VSPRTQAKKL
501: GFEKQSRPTS PKPEPNKNQR QQLSRQQTES PSPRRKPGMK SRGLQQSEDR SSDESSDLRS LRSDSNVSSA SNFDIEVTSR YKCDLTEQHT PKQRSPELGM
601: RSLPKPLKIT VEQPSPVSIL DVAFDDDESP SPVRKISIVF KDDDHIRSEE SLWMNKHNNL CRSIVWPESN TSLNQPDAAL TESFMEEGAD LRNGDRKYIS
701: KILSASGLLK DIDYSMLSIQ LHQAHLPINP SLFFVLEQNK TSNVTHRGRG FGQQTANLIG RSRRKLVFDT VNEILARKFA AEGCTKQPYI TSSISPLMKT
801: DKSSRGKELL ETLCSEIDRL QDNSNCILDE DDEDLIWEDL QSQGMNWKEI EGETPGLVLD IERLIFKDLI SEVVTSEVAA SPGNKLSGQP RQLFHC
001: MSAKLLYNLS DENPNLNKQI GCMNGIFQVF YRQHYPPRRV TGDELKSLPS GKASDNVGDT NISADKKETE KSKKKKTAKE KQRGVSSESS SRLSFSSSPC
101: SSSFSSADIS TTASQFEQPG LSNGENPVRE PTNGSPRWGG LMMPSDIREL VRSSIHKETR TRDEEALSQQ PKSARANVSL LKESSPSRNS NEWSEGRRVV
201: KLKDSPRFSY DERETRKTGA KLKETPRLSL DSRSNSFRSA RSSCSPEPQE LVTGHRRTTS SVVAKLMGLE VIPDEPVTIQ NRENRFCDSP RPTSRVEVDL
301: QRSRGFDSIK KMMPAKFPMK ASPWAQVDGA KNQVKIPDAT TLTVYGEIQK RLSQLEFKKS EKDLRALKQI LEAMEKTQQL ISKDDDDNKT LCSSNFMQRN
401: NQPIPSAINT SSMNFKSSSI VVMKAATAPV FKDTGIAGSA SFSPRNVALP NVKVGNLRQA QKVIPRKQSA MDVTPRPGYY KGQTESTMKN TSTRPLQSKS
501: DMAKSGKIQK PSVSLRTPPK KLGFEKQSRP TSPKPELNKN QRQQLSRQQT ESASPRRKPG IKSRGLQQSE DRLSDESSDL RSLRSDSNVS LASNLDTEVT
601: SRYNYERNSD ITEQHTPKQR SPDLGMRSLS KPLKVTVEQP SPVSVLDVAF DEDDSPSPVR KISIVFKEDD NLSSEESHWM NKNNNLCRSI VWPESNTSLK
701: QPDAELTEGF MEDDAEFKNG DHKYISEIML ASGLLRDIDY SMISIQLHQA HLPINPSLFF VLEQNKTSNV SLQDNKHKGR GFGQQQTVNL VERSKRKLIF
801: DTINEILAHR FAAEGCTKQP SITLSISTQR THEKSSRGEE LLQTLCSEID RLQDNSKCIL DEDDEDLIWE DLQSHGMNWK EIEGETPGLV LDIERLIFKD
901: LIGEVVTSEF AAFPRMLSGQ PRQLFHC
101: SSSFSSADIS TTASQFEQPG LSNGENPVRE PTNGSPRWGG LMMPSDIREL VRSSIHKETR TRDEEALSQQ PKSARANVSL LKESSPSRNS NEWSEGRRVV
201: KLKDSPRFSY DERETRKTGA KLKETPRLSL DSRSNSFRSA RSSCSPEPQE LVTGHRRTTS SVVAKLMGLE VIPDEPVTIQ NRENRFCDSP RPTSRVEVDL
301: QRSRGFDSIK KMMPAKFPMK ASPWAQVDGA KNQVKIPDAT TLTVYGEIQK RLSQLEFKKS EKDLRALKQI LEAMEKTQQL ISKDDDDNKT LCSSNFMQRN
401: NQPIPSAINT SSMNFKSSSI VVMKAATAPV FKDTGIAGSA SFSPRNVALP NVKVGNLRQA QKVIPRKQSA MDVTPRPGYY KGQTESTMKN TSTRPLQSKS
501: DMAKSGKIQK PSVSLRTPPK KLGFEKQSRP TSPKPELNKN QRQQLSRQQT ESASPRRKPG IKSRGLQQSE DRLSDESSDL RSLRSDSNVS LASNLDTEVT
601: SRYNYERNSD ITEQHTPKQR SPDLGMRSLS KPLKVTVEQP SPVSVLDVAF DEDDSPSPVR KISIVFKEDD NLSSEESHWM NKNNNLCRSI VWPESNTSLK
701: QPDAELTEGF MEDDAEFKNG DHKYISEIML ASGLLRDIDY SMISIQLHQA HLPINPSLFF VLEQNKTSNV SLQDNKHKGR GFGQQQTVNL VERSKRKLIF
801: DTINEILAHR FAAEGCTKQP SITLSISTQR THEKSSRGEE LLQTLCSEID RLQDNSKCIL DEDDEDLIWE DLQSHGMNWK EIEGETPGLV LDIERLIFKD
901: LIGEVVTSEF AAFPRMLSGQ PRQLFHC
Arabidopsis Description
LNG1Protein LONGIFOLIA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.