Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G183400.1 | Wheat | nucleus | 96.56 | 96.96 |
| HORVU2Hr1G032710.2 | Barley | cytosol | 93.74 | 94.03 |
| TraesCS2B01G202300.1 | Wheat | nucleus | 93.11 | 93.89 |
| Os07t0603300-01 | Rice | nucleus | 70.35 | 71.7 |
| KXG36646 | Sorghum | nucleus | 66.6 | 66.53 |
| Zm00001d006828_P001 | Maize | nucleus | 65.55 | 65.76 |
| Zm00001d022072_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 64.09 | 64.56 |
| Solyc02g089030.1.1 | Tomato | nucleus | 2.3 | 30.99 |
| CDY42438 | Canola | nucleus | 29.65 | 30.18 |
| CDX81888 | Canola | nucleus | 26.2 | 30.17 |
| Bra031037.1-P | Field mustard | nucleus | 26.2 | 30.06 |
| CDY59655 | Canola | nucleus | 26.2 | 30.06 |
| CDY49132 | Canola | nucleus | 28.5 | 29.71 |
| Bra039160.1-P | Field mustard | nucleus | 24.32 | 28.41 |
| CDX85545 | Canola | nucleus | 23.8 | 28.39 |
| Bra008136.1-P | Field mustard | nucleus | 29.75 | 28.39 |
| CDX83829 | Canola | cytosol | 24.22 | 28.26 |
| CDY43253 | Canola | nucleus | 24.32 | 28.0 |
| CDY60473 | Canola | nucleus | 24.01 | 27.84 |
| Bra023526.1-P | Field mustard | nucleus | 24.63 | 27.73 |
| VIT_14s0068g00360.t01 | Wine grape | nucleus | 28.29 | 27.68 |
| CDX91979 | Canola | nucleus | 24.43 | 27.37 |
| KRH63201 | Soybean | nucleus | 31.42 | 27.34 |
| AT1G74160.1 | Thale cress | nucleus | 29.23 | 27.32 |
| CDX69516 | Canola | nucleus | 25.47 | 27.23 |
| VIT_17s0000g05210.t01 | Wine grape | cytosol | 31.21 | 27.21 |
| KRH54713 | Soybean | nucleus | 31.21 | 27.08 |
| CDX96710 | Canola | nucleus | 24.74 | 27.05 |
| Bra008689.1-P | Field mustard | nucleus | 25.26 | 27.01 |
| Bra001034.1-P | Field mustard | nucleus | 23.9 | 26.72 |
| CDX74270 | Canola | nucleus | 23.7 | 26.49 |
| GSMUA_Achr4P07300_001 | Banana | cytosol | 24.84 | 26.27 |
| AT5G15580.1 | Thale cress | nucleus | 25.26 | 26.11 |
| Solyc03g115000.2.1 | Tomato | nucleus | 29.54 | 25.92 |
| CDX90985 | Canola | nucleus | 22.96 | 25.79 |
| KRH18379 | Soybean | nucleus | 26.51 | 25.79 |
| PGSC0003DMT400063076 | Potato | nucleus | 29.33 | 25.73 |
| KRG93656 | Soybean | nucleus | 26.51 | 25.71 |
| CDY26440 | Canola | nucleus | 23.9 | 25.64 |
| AT3G02170.1 | Thale cress | nucleus | 24.22 | 25.64 |
| AT1G18620.2 | Thale cress | nucleus | 26.62 | 25.15 |
| KRH03155 | Soybean | nucleus | 27.56 | 25.14 |
| KRH56796 | Soybean | nucleus | 27.56 | 25.12 |
| KRH01314 | Soybean | nucleus | 25.47 | 25.05 |
| GSMUA_Achr4P14410_001 | Banana | nucleus | 22.34 | 24.65 |
| PGSC0003DMT400003717 | Potato | nucleus | 24.11 | 24.44 |
| GSMUA_Achr7P26670_001 | Banana | nucleus | 17.64 | 24.39 |
| KRH45061 | Soybean | nucleus | 24.74 | 24.36 |
| TraesCS2A01G261000.1 | Wheat | cytosol | 27.14 | 24.23 |
| Solyc02g089050.2.1 | Tomato | nucleus | 17.22 | 22.48 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G176000.1 | EnsemblPlantsGene:TraesCS2A01G176000 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016049 | GO:GO:0040007 | GO:GO:0051513 | InterPro:DUF4378 | InterPro:LNG1/2 | ncoils:Coil |
| PANTHER:PTHR31680 | PANTHER:PTHR31680:SF4 | PFAM:PF14309 | SEG:seg | MapMan:13.4.1.2.2 | : |
Description
No Description!
Coordinates
chr2A:+:135191756..135197092
Molecular Weight (calculated)
105391.0 Da
IEP (calculated)
9.726
GRAVY (calculated)
-0.745
Length
958 amino acids
Sequence
(BLAST)
(BLAST)
001: MPAARRVLNA LADDMPEFDR RQMGCMAGIF QIFDRQRMLT ARRAGAGAGA GSGGRQPQQK RLPAGRTPPE SSSNVPVQSS STPKIILEKT LSKSMTENSS
101: LSIESSRASC SSSSCSSFSS IDGSKSAQQE LPYINEELFP QRPPKSSPSL QGADMDTKTA QPNVGFRDIV KDSINRDSGG LTVMTTANGA RRNAQYKDSP
201: RPLLLSKSMD GTYVISIDRT TKAVPANVVE SSRRFPEQSR FSCDDRRLLR PAETQEAKKP SSTRAKELPR LSLDSRKESL SPSSRLKSCS YRRTDDSLLD
301: TLKPQDSPGH RRSNSVIAKL MGLEEAPDAM GMLVADSYEP ARSPRTAAQA TRSERPSRSP RRDCQDACGS LPKNEPSALK TRPPPRILTE AAPWRQQERG
401: VSVTNSKASQ CRDAKVRPRT PSLYADIERR LGGLEFSECN KDFRALRILG VFHAKDAKHQ NNDGDAASVA SQSQEEDSAT TSSRSFQSPI VVMKSSRTTE
501: KPAVSVAPLA GLRGLRKLQP RDSSFTDKSE ASTNEKIHSR VARAQSKSDE PASRASSPRP TGSSSPRLVQ RKAESERRSR PPVSPKSPSK KSNEAASPRG
601: RTRSKPSQVR SNRDNEASQS PGRRISLAKQ IDVSIMDCQS PLVARSSFVD PKTPSQKSPS SILGSDHKIH SLENALSPVS VLDTSFYHKS ISDSFKDGET
701: HTSDECWNSN SLPDTPQSKT SSEVSQIKPE NLEALIQKLE QLQSMNDEAA NSKDHQYIYE ILLASGLLHK ELSFAAMPAQ LSPSSCPINP ELFLILEQTK
801: PHFISAIQAV TGAKKSSDPN MEKLHRRIVF DLVNEIIAQK MNIYSSASGT AKLLRSRKLS GWRLFKELCT EVDRLLSESS AAKCSEEDED ENIPLSEDAL
901: YEMKDWGSPE GELQGMVLDI ERSIFRDLID EVIGCEATER MQAGQWKLRR QLSFSSIN
101: LSIESSRASC SSSSCSSFSS IDGSKSAQQE LPYINEELFP QRPPKSSPSL QGADMDTKTA QPNVGFRDIV KDSINRDSGG LTVMTTANGA RRNAQYKDSP
201: RPLLLSKSMD GTYVISIDRT TKAVPANVVE SSRRFPEQSR FSCDDRRLLR PAETQEAKKP SSTRAKELPR LSLDSRKESL SPSSRLKSCS YRRTDDSLLD
301: TLKPQDSPGH RRSNSVIAKL MGLEEAPDAM GMLVADSYEP ARSPRTAAQA TRSERPSRSP RRDCQDACGS LPKNEPSALK TRPPPRILTE AAPWRQQERG
401: VSVTNSKASQ CRDAKVRPRT PSLYADIERR LGGLEFSECN KDFRALRILG VFHAKDAKHQ NNDGDAASVA SQSQEEDSAT TSSRSFQSPI VVMKSSRTTE
501: KPAVSVAPLA GLRGLRKLQP RDSSFTDKSE ASTNEKIHSR VARAQSKSDE PASRASSPRP TGSSSPRLVQ RKAESERRSR PPVSPKSPSK KSNEAASPRG
601: RTRSKPSQVR SNRDNEASQS PGRRISLAKQ IDVSIMDCQS PLVARSSFVD PKTPSQKSPS SILGSDHKIH SLENALSPVS VLDTSFYHKS ISDSFKDGET
701: HTSDECWNSN SLPDTPQSKT SSEVSQIKPE NLEALIQKLE QLQSMNDEAA NSKDHQYIYE ILLASGLLHK ELSFAAMPAQ LSPSSCPINP ELFLILEQTK
801: PHFISAIQAV TGAKKSSDPN MEKLHRRIVF DLVNEIIAQK MNIYSSASGT AKLLRSRKLS GWRLFKELCT EVDRLLSESS AAKCSEEDED ENIPLSEDAL
901: YEMKDWGSPE GELQGMVLDI ERSIFRDLID EVIGCEATER MQAGQWKLRR QLSFSSIN
001: MAAKLLHTLA DENSDLQKKI GCMNGIFQIF DRHHILTSRR KSLTLGNAHV NSINFERDSV DAICQQRSAF QCQDSNLVSS NGLSEKLTRL STECSRVSFS
101: SSCSSSSPLS SEVNREVQPE ISADDRVIFP ESPTSDPVMS QGTGARVGLD LRDVVRDSMY REARGLSDVC RQNRREDSPR PYGLKQSRPV DFNESCRALA
201: KLRKTSHHYY NEVDMKDTSR YYVDSRGKSK SGKKLKELPR LSLDSRDHVD LKSGNKLSES FSRSSSMNKV SGSPKRPPSV VAKLMGLETL PGSPLSRDRF
301: NMFDDNSDPF ARSLRENSLN RSLRFSPSSP RSLGKDPAAS SSSPRWRSSE FVMKPLSSLR YPIEPAPWKQ TERNRFSQKQ ACRSVKSLSQ SMEGKLKDLE
401: VKHSGKDLRA LKDILEAMQS KGLFDTRKQQ QCSNLEAQRD YELADSATSK HDSIDLRNPV IPSNMRGPIV IMKPARLVEK SGIPSSSLIP IHSLSGLNKT
501: CREEPVNVRR SSTSRKAVKD RSPGNQRAEP CISSDKKSSS RNVMSSQVYK ESTSKNSGPA SSKLQQMKPE HDKRSRPPAS PSDSSKLRKQ ISRQPVESTT
601: SPGGRRSRPR DQRSLQQNDG QLSQMSNKSR TKIEATLSIE NGGKSPSVIE AAKAVVSNLI QNKSSPTFSE DGSSEHPSPV SVLNAEIYRE IEPSPVKIQA
701: SEGSVNGSIN SGVEHCEEDQ WNPAYSFSKT TTSFSPEMNR KKLQNVEHLV QKLKRLNSSH DETSQDYIAS LCENSDPDTD HRYISEILLA SGLLLRDLGS
801: GLTTFQLHPS GHPINPELFL VIEQTKGCSS SSNEKINRKL VFDAVNEMLG KKLAFVESYV DPWMKQAKAR KKVLSAQNLL KELCSEIEIL QKQAKKRSEN
901: LLLLEEEEEE EEDFLKCILD EDMAIQSEKW TDFDDAIPGL VLDMERLLFK DLVKEIVHGE IDRLQGNSRR QKTVLADE
101: SSCSSSSPLS SEVNREVQPE ISADDRVIFP ESPTSDPVMS QGTGARVGLD LRDVVRDSMY REARGLSDVC RQNRREDSPR PYGLKQSRPV DFNESCRALA
201: KLRKTSHHYY NEVDMKDTSR YYVDSRGKSK SGKKLKELPR LSLDSRDHVD LKSGNKLSES FSRSSSMNKV SGSPKRPPSV VAKLMGLETL PGSPLSRDRF
301: NMFDDNSDPF ARSLRENSLN RSLRFSPSSP RSLGKDPAAS SSSPRWRSSE FVMKPLSSLR YPIEPAPWKQ TERNRFSQKQ ACRSVKSLSQ SMEGKLKDLE
401: VKHSGKDLRA LKDILEAMQS KGLFDTRKQQ QCSNLEAQRD YELADSATSK HDSIDLRNPV IPSNMRGPIV IMKPARLVEK SGIPSSSLIP IHSLSGLNKT
501: CREEPVNVRR SSTSRKAVKD RSPGNQRAEP CISSDKKSSS RNVMSSQVYK ESTSKNSGPA SSKLQQMKPE HDKRSRPPAS PSDSSKLRKQ ISRQPVESTT
601: SPGGRRSRPR DQRSLQQNDG QLSQMSNKSR TKIEATLSIE NGGKSPSVIE AAKAVVSNLI QNKSSPTFSE DGSSEHPSPV SVLNAEIYRE IEPSPVKIQA
701: SEGSVNGSIN SGVEHCEEDQ WNPAYSFSKT TTSFSPEMNR KKLQNVEHLV QKLKRLNSSH DETSQDYIAS LCENSDPDTD HRYISEILLA SGLLLRDLGS
801: GLTTFQLHPS GHPINPELFL VIEQTKGCSS SSNEKINRKL VFDAVNEMLG KKLAFVESYV DPWMKQAKAR KKVLSAQNLL KELCSEIEIL QKQAKKRSEN
901: LLLLEEEEEE EEDFLKCILD EDMAIQSEKW TDFDDAIPGL VLDMERLLFK DLVKEIVHGE IDRLQGNSRR QKTVLADE
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1); Has 1987 Blast hits to 1263 proteins in 207 species: Archae - 0; Bacteria - 172; Metazoa - 665; Fungi - 149; Plants - 271; Viruses - 6; Other Eukaryotes /.../ (source: NCBI BLink). [Source:TAIR;Acc:AT1G18620]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.