Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43253 | Canola | nucleus | 66.41 | 72.24 |
| CDX74270 | Canola | nucleus | 67.4 | 71.18 |
| Bra039160.1-P | Field mustard | nucleus | 63.76 | 70.37 |
| Bra001034.1-P | Field mustard | nucleus | 66.63 | 70.36 |
| CDX91979 | Canola | nucleus | 65.86 | 69.71 |
| CDY60473 | Canola | nucleus | 62.21 | 68.16 |
| AT5G15580.1 | Thale cress | nucleus | 55.14 | 53.83 |
| VIT_14s0068g00360.t01 | Wine grape | nucleus | 33.7 | 31.15 |
| AT1G74160.1 | Thale cress | nucleus | 31.49 | 27.8 |
| PGSC0003DMT400003717 | Potato | nucleus | 27.96 | 26.77 |
| Solyc02g089030.1.1 | Tomato | nucleus | 2.1 | 26.76 |
| KRH45061 | Soybean | nucleus | 28.73 | 26.72 |
| KRH01314 | Soybean | nucleus | 28.29 | 26.28 |
| KRG93656 | Soybean | nucleus | 27.96 | 25.61 |
| KRH18379 | Soybean | nucleus | 27.85 | 25.58 |
| Solyc02g089050.2.1 | Tomato | nucleus | 20.44 | 25.2 |
| GSMUA_Achr4P32860_001 | Banana | nucleus | 26.63 | 24.67 |
| TraesCS2B01G281200.2 | Wheat | cytosol | 28.95 | 24.58 |
| TraesCS2D01G183400.1 | Wheat | nucleus | 25.64 | 24.32 |
| AT1G18620.2 | Thale cress | nucleus | 27.18 | 24.26 |
| TraesCS2D01G262900.1 | Wheat | cytosol | 28.84 | 24.26 |
| TraesCS2A01G176000.1 | Wheat | nucleus | 25.64 | 24.22 |
| TraesCS2A01G261000.1 | Wheat | cytosol | 28.62 | 24.14 |
| TraesCS2B01G202300.1 | Wheat | nucleus | 25.3 | 24.11 |
| HORVU2Hr1G032710.2 | Barley | cytosol | 25.41 | 24.08 |
| EER98557 | Sorghum | nucleus | 28.73 | 23.99 |
| GSMUA_Achr7P26670_001 | Banana | nucleus | 18.34 | 23.95 |
| HORVU2Hr1G063820.1 | Barley | cytosol | 27.96 | 23.56 |
| Zm00001d019700_P006 | Maize | nucleus | 27.51 | 23.38 |
| Os07t0109400-01 | Rice | nucleus | 28.07 | 23.32 |
| Os07t0603300-01 | Rice | nucleus | 24.2 | 23.3 |
| Zm00001d005297_P006 | Maize | nucleus | 27.85 | 22.91 |
| Os03t0418700-02 | Rice | nucleus | 23.31 | 22.79 |
| Zm00001d022072_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 23.65 | 22.5 |
| KXG36646 | Sorghum | nucleus | 23.76 | 22.42 |
| Zm00001d006828_P001 | Maize | nucleus | 23.43 | 22.2 |
| GSMUA_Achr4P07300_001 | Banana | cytosol | 22.1 | 22.08 |
| KXG39125 | Sorghum | plastid | 22.21 | 22.02 |
| GSMUA_Achr4P14410_001 | Banana | nucleus | 20.11 | 20.97 |
Protein Annotations
| MapMan:13.4.1.2.2 | EntrezGene:821279 | ProteinID:AAF02120.1 | ProteinID:AAF14821.1 | ProteinID:AEE73772.1 | ArrayExpress:AT3G02170 |
| EnsemblPlantsGene:AT3G02170 | RefSeq:AT3G02170 | TAIR:AT3G02170 | RefSeq:AT3G02170-TAIR-G | EnsemblPlants:AT3G02170.1 | TAIR:AT3G02170.1 |
| EMBL:AY056131 | EMBL:AY086190 | EMBL:AY150501 | Unigene:At.23828 | ncoils:Coil | InterPro:DUF4378 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005856 | GO:GO:0008017 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016049 | GO:GO:0040007 | GO:GO:0051513 | InterPro:LNG1/2 | Symbol:LNG2 |
| RefSeq:NP_566165.2 | PFAM:PF14309 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020121 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31680 | PANTHER:PTHR31680:SF4 | UniProt:Q9S823 |
| UniParc:UPI00000ABF83 | SEG:seg | : | : | : | : |
Description
LNG2Protein LONGIFOLIA 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S823]
Coordinates
chr3:-:396012..399960
Molecular Weight (calculated)
101633.0 Da
IEP (calculated)
9.990
GRAVY (calculated)
-0.841
Length
905 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAKLLYNLS DENPNLNKQF GCMNGIFQVF YRQHCPATPV TVSGGAEKSL PPGERRGSVG ETNMESDKET ERSSTKKKKS AAKEKHRVSF ESSSRPSFSS
101: SPRSSSFSSA EVSTTASQFD QPGENLIREQ PNGGLMMPYD LKELVKGSIN REIRTRGEEA SFTQQQQPIS ARSSMLLLKE SSLRSPCRSS NEWNEGRGAA
201: MKFKESHRLS YDEREMRNNG FRVGSKLKET PRLSLDSRSN SFRSPRADAA RSSCPEEPAT MTHRRSSSSV VAKLMGLEVI ADNSDTEQRR ENRFCDSPRP
301: MSRVEPTALQ RSRSVDSIKR IPASAASKFP MEPAPWKQMK AGDSALTVYG EIQKRLTQLE FKKSGKDLRA LKQILEAMEK TQQLIDESRD DGTLSTTTLM
401: QRTHKPVSAA TSPARNFKSS SIVVMKSAAP VSTSPLPQNV TLPNVKVGNS RQTRKVTSGK QNAMDLTPRP GLYKGQLDST KSNSPKTVRS RQALAADAGS
501: MTKSGRSQQH SVSPRTQPKK LGFEKQTRPT TPKSEPGKRQ LGRQQTEVAS PRRKQMIKPH STLQQPDDRL SDARSDLRSL RSDSNISLGS NVDIEVTSRH
601: RLERNCDFPE QHTPKQRSPD FGIKQDRPSL KPLKVTVEQP SPVSVLDAVF DEEDSPSPVR KISLSFKEED ALRSEESEWI NKPTSFCRSV PFPQSNRGPM
701: KPSSDHFECS PEEGADFKSG NHKYILEILL ASGILRDLEY SMISFQLHQT RLPINPGLFF ILEQNKASNV TLPDNKHRGR GFRQQQTNPT ETIRRKLVFD
801: TVNEILARKF TAEGCIKPRL IANPLKKLEK ISKEEQLLQT LCSEIDRLQQ NNSNCILEDD EEDIIWEDLQ SQSMNLKEFE GETPGIVLDI ERMIFRDLVN
901: EVCFC
101: SPRSSSFSSA EVSTTASQFD QPGENLIREQ PNGGLMMPYD LKELVKGSIN REIRTRGEEA SFTQQQQPIS ARSSMLLLKE SSLRSPCRSS NEWNEGRGAA
201: MKFKESHRLS YDEREMRNNG FRVGSKLKET PRLSLDSRSN SFRSPRADAA RSSCPEEPAT MTHRRSSSSV VAKLMGLEVI ADNSDTEQRR ENRFCDSPRP
301: MSRVEPTALQ RSRSVDSIKR IPASAASKFP MEPAPWKQMK AGDSALTVYG EIQKRLTQLE FKKSGKDLRA LKQILEAMEK TQQLIDESRD DGTLSTTTLM
401: QRTHKPVSAA TSPARNFKSS SIVVMKSAAP VSTSPLPQNV TLPNVKVGNS RQTRKVTSGK QNAMDLTPRP GLYKGQLDST KSNSPKTVRS RQALAADAGS
501: MTKSGRSQQH SVSPRTQPKK LGFEKQTRPT TPKSEPGKRQ LGRQQTEVAS PRRKQMIKPH STLQQPDDRL SDARSDLRSL RSDSNISLGS NVDIEVTSRH
601: RLERNCDFPE QHTPKQRSPD FGIKQDRPSL KPLKVTVEQP SPVSVLDAVF DEEDSPSPVR KISLSFKEED ALRSEESEWI NKPTSFCRSV PFPQSNRGPM
701: KPSSDHFECS PEEGADFKSG NHKYILEILL ASGILRDLEY SMISFQLHQT RLPINPGLFF ILEQNKASNV TLPDNKHRGR GFRQQQTNPT ETIRRKLVFD
801: TVNEILARKF TAEGCIKPRL IANPLKKLEK ISKEEQLLQT LCSEIDRLQQ NNSNCILEDD EEDIIWEDLQ SQSMNLKEFE GETPGIVLDI ERMIFRDLVN
901: EVCFC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.