Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH63201 | Soybean | nucleus | 41.25 | 36.6 |
| VIT_17s0000g05210.t01 | Wine grape | cytosol | 40.94 | 36.4 |
| CDY42438 | Canola | nucleus | 34.8 | 36.13 |
| KRH54713 | Soybean | nucleus | 40.53 | 35.87 |
| CDY49132 | Canola | nucleus | 33.16 | 35.26 |
| Solyc02g089030.1.1 | Tomato | nucleus | 2.56 | 35.21 |
| Os07t0109400-01 | Rice | nucleus | 38.49 | 34.53 |
| CDX81888 | Canola | nucleus | 29.38 | 34.5 |
| EER98557 | Sorghum | nucleus | 37.97 | 34.23 |
| KRH03155 | Soybean | nucleus | 36.44 | 33.9 |
| Zm00001d019700_P006 | Maize | nucleus | 36.95 | 33.9 |
| Solyc03g115000.2.1 | Tomato | nucleus | 37.77 | 33.79 |
| PGSC0003DMT400063076 | Potato | nucleus | 37.67 | 33.7 |
| TraesCS2B01G281200.2 | Wheat | cytosol | 36.64 | 33.58 |
| Bra008136.1-P | Field mustard | nucleus | 34.39 | 33.47 |
| Bra031037.1-P | Field mustard | nucleus | 28.56 | 33.41 |
| CDY59655 | Canola | nucleus | 28.56 | 33.41 |
| TraesCS2D01G262900.1 | Wheat | cytosol | 36.64 | 33.27 |
| HORVU2Hr1G063820.1 | Barley | cytosol | 36.54 | 33.24 |
| TraesCS2A01G261000.1 | Wheat | cytosol | 36.23 | 32.99 |
| VIT_14s0068g00360.t01 | Wine grape | nucleus | 32.96 | 32.89 |
| KRH56796 | Soybean | nucleus | 35.21 | 32.73 |
| CDX83829 | Canola | cytosol | 27.23 | 32.4 |
| AT1G74160.1 | Thale cress | nucleus | 33.78 | 32.2 |
| CDX96710 | Canola | nucleus | 28.45 | 31.74 |
| Zm00001d005297_P006 | Maize | nucleus | 35.62 | 31.64 |
| GSMUA_Achr4P07300_001 | Banana | cytosol | 29.27 | 31.57 |
| KRH45061 | Soybean | nucleus | 29.58 | 29.7 |
| AT1G18620.2 | Thale cress | nucleus | 30.6 | 29.49 |
| CDY60473 | Canola | nucleus | 24.67 | 29.18 |
| CDY43253 | Canola | nucleus | 24.77 | 29.09 |
| KRH01314 | Soybean | nucleus | 28.86 | 28.95 |
| GSMUA_Achr7P26670_001 | Banana | nucleus | 20.47 | 28.86 |
| Bra039160.1-P | Field mustard | nucleus | 24.16 | 28.78 |
| CDX85545 | Canola | nucleus | 23.44 | 28.52 |
| PGSC0003DMT400003717 | Potato | nucleus | 27.53 | 28.47 |
| CDX91979 | Canola | nucleus | 24.77 | 28.3 |
| GSMUA_Achr4P14410_001 | Banana | nucleus | 24.87 | 28.0 |
| KRG93656 | Soybean | nucleus | 28.25 | 27.94 |
| CDX69516 | Canola | nucleus | 25.59 | 27.9 |
| Bra008689.1-P | Field mustard | nucleus | 25.59 | 27.9 |
| CDX74270 | Canola | nucleus | 24.46 | 27.89 |
| KRH18379 | Soybean | nucleus | 28.05 | 27.82 |
| Bra001034.1-P | Field mustard | nucleus | 24.36 | 27.77 |
| Bra023526.1-P | Field mustard | nucleus | 23.95 | 27.5 |
| AT5G15580.1 | Thale cress | nucleus | 25.79 | 27.18 |
| CDX90985 | Canola | nucleus | 23.54 | 26.96 |
| AT3G02170.1 | Thale cress | nucleus | 24.67 | 26.63 |
| CDY26440 | Canola | nucleus | 23.85 | 26.09 |
| Solyc02g089050.2.1 | Tomato | nucleus | 18.94 | 25.2 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P32860_001 | EnsemblPlants:GSMUA_Achr4T32860_001 | EnsemblPlantsGene:GSMUA_Achr4G32860_001 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016049 | GO:GO:0040007 | GO:GO:0051513 | InterPro:DUF4378 | InterPro:LNG1/2 |
| PANTHER:PTHR31680 | PFAM:PF14309 | SEG:seg | UniParc:UPI000295DAC6 | UniProt:M0SU48 | MapMan:13.4.1.2.2 |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G32860_001]
Coordinates
chr4:-:29504534..29510419
Molecular Weight (calculated)
108940.0 Da
IEP (calculated)
9.331
GRAVY (calculated)
-0.739
Length
977 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAKFLHTFA DEDPEMKRQI GCMTGIFQIF DRQRLLTGRR LSGHSHQGVS SGKVLSNRSS VGTEGNRCSP HIVLERSLSK SLNENQRISV ESSRTSYSSS
101: SCSSFSSLDC NKSSQEEHPS VERICCTERS VKDSPKLKSH EVHAKPICCE LQGNPPNVSI QTDFRSLDFQ DVVKDSIYKD TQPLSVRTSL KEVTKNHTLK
201: HKDSPRPILL SKSMDASHTT EIDGRSRVHI DLGESLREAP RFSYDGRDSR SSLDSRESSK ISSKLRELPR LSLDGRECSN TTLKEFDRSS INRRADVILE
301: HQQEPGSCKR PHSIVAKLMG LEAEPNSQEQ VVLPDTNSNK KFDNFNRQKN IGFASKQLTN TQDCKEDLLS CSHKVPIEPA PWRHNDKICI PQKMTFLEFQ
401: QSNKDLRALK HILDAMHAKG LLETKNTADQ PSKTSVSRDK TSRAFDSPIV IMKPAKSFNR LDISPSSVIP LEGLSGLQRL RTSNLKFRKE ENGTQKNCMR
501: MSQVSPRLQG ALREDFGSPV KASNSLSPRL QLKKSEMEKR SRPPLPSSPS NMPPKQPANR YSSESVSPRG RLRRKPAQAQ QNNDQLNDTS SETRSRNDQY
601: DKISLKPDGH ISLISQADTE VIRSNHSDDP CIFRQGNQSP SGRGAKSASS AMYRKKNSHS SKEDGLAVEI ETAVPKQPIP IPVLHASLNQ DDLPPKEISS
701: KSFEDDEIHA SSVDCRNPTG LPDAPSPNLS SGFNQKKLAN IEHLVQKLRQ ISSKDDEAST TDHIALLCEK QSPDHRYVSE ILLASGLLMR DLTSGPISTV
801: PIQLHPSGHP INPDLFLVLE QTKSPCLAKP VTVSQNIVQL KSDPEKLQRK LVFDVVNELL IQKLKLASPG PRPDPLLQVR KAKFPSGQRL LKEICSDIEH
901: LKAESFVAGS LYGDNSFMAG EDMLRHSEGW TDSGKELPTI VLEIERSIFK DLIDEVISGQ GATGFQSKAS RRQTVRR
101: SCSSFSSLDC NKSSQEEHPS VERICCTERS VKDSPKLKSH EVHAKPICCE LQGNPPNVSI QTDFRSLDFQ DVVKDSIYKD TQPLSVRTSL KEVTKNHTLK
201: HKDSPRPILL SKSMDASHTT EIDGRSRVHI DLGESLREAP RFSYDGRDSR SSLDSRESSK ISSKLRELPR LSLDGRECSN TTLKEFDRSS INRRADVILE
301: HQQEPGSCKR PHSIVAKLMG LEAEPNSQEQ VVLPDTNSNK KFDNFNRQKN IGFASKQLTN TQDCKEDLLS CSHKVPIEPA PWRHNDKICI PQKMTFLEFQ
401: QSNKDLRALK HILDAMHAKG LLETKNTADQ PSKTSVSRDK TSRAFDSPIV IMKPAKSFNR LDISPSSVIP LEGLSGLQRL RTSNLKFRKE ENGTQKNCMR
501: MSQVSPRLQG ALREDFGSPV KASNSLSPRL QLKKSEMEKR SRPPLPSSPS NMPPKQPANR YSSESVSPRG RLRRKPAQAQ QNNDQLNDTS SETRSRNDQY
601: DKISLKPDGH ISLISQADTE VIRSNHSDDP CIFRQGNQSP SGRGAKSASS AMYRKKNSHS SKEDGLAVEI ETAVPKQPIP IPVLHASLNQ DDLPPKEISS
701: KSFEDDEIHA SSVDCRNPTG LPDAPSPNLS SGFNQKKLAN IEHLVQKLRQ ISSKDDEAST TDHIALLCEK QSPDHRYVSE ILLASGLLMR DLTSGPISTV
801: PIQLHPSGHP INPDLFLVLE QTKSPCLAKP VTVSQNIVQL KSDPEKLQRK LVFDVVNELL IQKLKLASPG PRPDPLLQVR KAKFPSGQRL LKEICSDIEH
901: LKAESFVAGS LYGDNSFMAG EDMLRHSEGW TDSGKELPTI VLEIERSIFK DLIDEVISGQ GATGFQSKAS RRQTVRR
0001: MAAKLLHSLA DDSADLQKQI GCMNGIFQIF DRHHVLTGRR KSLTLGNGNA ININYERDSV DTIYQQKETF QDSNIGGNVK EKRRVSTESS RVSFSSSCSS
0101: SPSSSEFNRG VQPDASAYDR ANFQESPTSD PEMTEGNGFS HLGLDLRDVV RDSMYREARG LLSKTPMTRE EVVRQSRRED SPRPYGLKQS TPMDLNESFR
0201: VLARLRETSQ HYNELGMKDA PRYSVDSHDT LKSRQKLKEL PRLSLDSRER ATRNSSVDPK SSKLSESFSE SCSSSSKKRP PSVVAKLMGL ETLPGSPLGR
0301: DIHQFGLNKT NISDQNDDPF SRSLREKNLN RAIRFSPSSP RSLGKDPASP RWRNSDFVMK PLSNTRFPVE PAPWKHADRN RVLQKQASMP VKAKPYEAPN
0401: FPPTVYSEME RRLNDLEFKH SGKDLRALKQ ILESMQSKGF LDTEKQQQST NFAVQRDYER ENSATSNHAM SSRTRVQSSS SNQVYQSPIV IMKPAKLVEK
0501: AGIPASSLIP IHSLTGIKKI RREKPDDKGT SASNSKRVTK DCSPGNRRAE SCTSSFDKKS DSRNVRSSSK KPQQVSKESA SKSSGSVSPR LQQKKLEYDK
0601: RSRPPTPPDS SKSRKPSNQQ LVESTSPGGR RRPKGQKSLQ QVDDQLSQAS NESRTSSHGI CTQSETEASA CVEKSTEADG GKSPSVIEAA KAVVSNLMQN
0701: KSSPRFSEDG LSANLSLVAL EHPSPISVLD ASTYRETEPS PVKTQGNVAH DFGDENCEDQ WNPAYSFSET TSSFSPEINR KKLQNVEHLV QKLRRLNSSH
0801: DEASQDYIAS LCENADPTTD HRYISEILLA SGLLLRDLGS GLTTFQLHPS GHPINPELFF VLEQTKGSST THLLHKEESK VLKNEKLNRK LVFDLVNEIL
0901: VEKLASVEAT TNPLMKSYAK VTKKAVSAQQ LLKELCSAIE TQQKQATKRS ENFLLEEEDD FLKSILAEDV TIRSGNWADF SGEMSGLVLD VERLVFKDLV
1001: NEIVHAETSR LQAKSGRRRT LFADQ
0101: SPSSSEFNRG VQPDASAYDR ANFQESPTSD PEMTEGNGFS HLGLDLRDVV RDSMYREARG LLSKTPMTRE EVVRQSRRED SPRPYGLKQS TPMDLNESFR
0201: VLARLRETSQ HYNELGMKDA PRYSVDSHDT LKSRQKLKEL PRLSLDSRER ATRNSSVDPK SSKLSESFSE SCSSSSKKRP PSVVAKLMGL ETLPGSPLGR
0301: DIHQFGLNKT NISDQNDDPF SRSLREKNLN RAIRFSPSSP RSLGKDPASP RWRNSDFVMK PLSNTRFPVE PAPWKHADRN RVLQKQASMP VKAKPYEAPN
0401: FPPTVYSEME RRLNDLEFKH SGKDLRALKQ ILESMQSKGF LDTEKQQQST NFAVQRDYER ENSATSNHAM SSRTRVQSSS SNQVYQSPIV IMKPAKLVEK
0501: AGIPASSLIP IHSLTGIKKI RREKPDDKGT SASNSKRVTK DCSPGNRRAE SCTSSFDKKS DSRNVRSSSK KPQQVSKESA SKSSGSVSPR LQQKKLEYDK
0601: RSRPPTPPDS SKSRKPSNQQ LVESTSPGGR RRPKGQKSLQ QVDDQLSQAS NESRTSSHGI CTQSETEASA CVEKSTEADG GKSPSVIEAA KAVVSNLMQN
0701: KSSPRFSEDG LSANLSLVAL EHPSPISVLD ASTYRETEPS PVKTQGNVAH DFGDENCEDQ WNPAYSFSET TSSFSPEINR KKLQNVEHLV QKLRRLNSSH
0801: DEASQDYIAS LCENADPTTD HRYISEILLA SGLLLRDLGS GLTTFQLHPS GHPINPELFF VLEQTKGSST THLLHKEESK VLKNEKLNRK LVFDLVNEIL
0901: VEKLASVEAT TNPLMKSYAK VTKKAVSAQQ LLKELCSAIE TQQKQATKRS ENFLLEEEDD FLKSILAEDV TIRSGNWADF SGEMSGLVLD VERLVFKDLV
1001: NEIVHAETSR LQAKSGRRRT LFADQ
Arabidopsis Description
LONGIFOLIA protein [Source:UniProtKB/TrEMBL;Acc:Q0WNQ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.