Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85545 | Canola | nucleus | 68.11 | 72.35 |
| CDX69516 | Canola | nucleus | 67.88 | 64.62 |
| CDY26440 | Canola | nucleus | 66.0 | 63.05 |
| CDY43253 | Canola | nucleus | 48.65 | 49.88 |
| CDY60473 | Canola | nucleus | 47.71 | 49.27 |
| CDX91979 | Canola | nucleus | 48.89 | 48.77 |
| CDX74270 | Canola | nucleus | 48.65 | 48.42 |
| Solyc02g089030.1.1 | Tomato | nucleus | 2.93 | 35.21 |
| VIT_14s0068g00360.t01 | Wine grape | nucleus | 35.05 | 30.54 |
| CDY42438 | Canola | nucleus | 32.24 | 29.22 |
| CDY49132 | Canola | nucleus | 30.95 | 28.73 |
| CDX81888 | Canola | nucleus | 27.32 | 28.0 |
| CDY59655 | Canola | nucleus | 26.85 | 27.43 |
| KRH45061 | Soybean | nucleus | 30.13 | 26.41 |
| KRH01314 | Soybean | nucleus | 30.01 | 26.28 |
| CDX83829 | Canola | cytosol | 24.85 | 25.82 |
| KRH18379 | Soybean | nucleus | 28.96 | 25.08 |
| KRG93656 | Soybean | nucleus | 28.96 | 25.0 |
| CDX96710 | Canola | nucleus | 25.44 | 24.77 |
| PGSC0003DMT400003717 | Potato | nucleus | 27.43 | 24.76 |
| GSMUA_Achr7P26670_001 | Banana | nucleus | 19.34 | 23.81 |
| GSMUA_Achr4P32860_001 | Banana | nucleus | 26.96 | 23.54 |
| TraesCS2B01G202300.1 | Wheat | nucleus | 25.91 | 23.26 |
| HORVU2Hr1G032710.2 | Barley | cytosol | 26.03 | 23.25 |
| TraesCS2D01G183400.1 | Wheat | nucleus | 25.79 | 23.06 |
| TraesCS2A01G176000.1 | Wheat | nucleus | 25.79 | 22.96 |
| Solyc02g089050.2.1 | Tomato | nucleus | 19.58 | 22.75 |
| TraesCS2B01G281200.2 | Wheat | cytosol | 28.02 | 22.42 |
| GSMUA_Achr4P07300_001 | Banana | cytosol | 23.8 | 22.41 |
| Os03t0418700-02 | Rice | nucleus | 24.27 | 22.35 |
| Os07t0603300-01 | Rice | nucleus | 24.62 | 22.34 |
| TraesCS2D01G262900.1 | Wheat | cytosol | 27.78 | 22.03 |
| KXG36646 | Sorghum | nucleus | 24.74 | 22.0 |
| TraesCS2A01G261000.1 | Wheat | cytosol | 27.55 | 21.9 |
| HORVU2Hr1G063820.1 | Barley | cytosol | 27.32 | 21.69 |
| EER98557 | Sorghum | nucleus | 27.32 | 21.49 |
| Os07t0109400-01 | Rice | nucleus | 27.43 | 21.49 |
| Zm00001d006828_P001 | Maize | nucleus | 23.8 | 21.26 |
| Zm00001d019700_P006 | Maize | nucleus | 26.38 | 21.13 |
| Zm00001d022072_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 23.33 | 20.93 |
| KXG39125 | Sorghum | plastid | 22.04 | 20.59 |
| GSMUA_Achr4P14410_001 | Banana | nucleus | 20.87 | 20.51 |
| Zm00001d005297_P006 | Maize | nucleus | 25.91 | 20.09 |
Protein Annotations
| EnsemblPlants:CDX90985 | EnsemblPlantsGene:GSBRNA2T00151742001 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016049 | GO:GO:0040007 | GO:GO:0051513 | InterPro:DUF4378 | InterPro:LNG1/2 | ncoils:Coil |
| PANTHER:PTHR31680 | PANTHER:PTHR31680:SF4 | PFAM:PF14309 | ProteinID:CDX90985 | ProteinID:CDX90985.1 | SEG:seg |
| UniParc:UPI0004EEFE2C | MapMan:13.4.1.2.2 | : | : | : | : |
Description
BnaC02g06120D
Coordinates
chrLK031865:+:141437..144792
Molecular Weight (calculated)
95633.8 Da
IEP (calculated)
10.041
GRAVY (calculated)
-0.789
Length
853 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAKLLYNLS DENPNLNKQF GCMNGIFQVF YRQHYPARRV VVAGDELRSL PSGKAINNVC DTNVETEKSK KKKKKQRGVS SESSSRLSFS SSPCSSSFSS
101: ESQFEQHGLT QTSNGENPVR GGLMMSSGLR ELVRNSIHKE TRARDEEESA RANASLLKES SPARRVVKLK DSPRFSYDER ETRKTGAKFK ETPRLSLDSR
201: SNSFKSARSS SSPEPQELVT GHHRRTTSSV VAKLMGLEVI QDECVTDQVR ENRFCDSPRP TLQKSRSSDS IKKTMMPAKF PMKAAEAATT LTVYGEIQKR
301: LSQLEFKNSE KDLTALKQIL EAMETTQKLM SKDDDNNGLS STNFMQPVLS ATTRSSSIVV TKAATASVFN DTGRSSSASS SPRSVTLPNV KVTNLRQSQR
401: VTPRKQSAMD VTPRLGVYKG QTDSPTKNTA TRALQSKNEM AKSQKPSVSP RTQPKKLGFE KQSRPTSPKP EQNKIQRQQQ LSRQQTESAS LRRKPRGRQQ
501: SEDRLSDESS LRSDSNVSSA SNLDSEVTSR YKYERNIDFK EQHTPKQRSP EMRSLPKPLK VTVEQPSPVS VLDVAFDEDE SPSPVRKISV VFKVIINSVL
601: TFTSQWMNKH KALRRSIVWP ESNGSLNQPD AEFNESIMEE GAESNNGDHK YISEILLASG LLRDIDYSML SIQLHQAHLP INPSLFFVLE QSKTSNVTQH
701: DKKHRGIGFG QQTANLIERS RRKLVFDTIN EILARKFAAE GCTKQPYITS SISQLRRTNK SSKGKELLET MCSEIDRLQD NSKCILDEDD EDLIWEDLQG
801: QGMNWKEIEG ETPGLVLDIE RLIFKDLISE VVTSEVAASP GMLSGKPRQL FNC
101: ESQFEQHGLT QTSNGENPVR GGLMMSSGLR ELVRNSIHKE TRARDEEESA RANASLLKES SPARRVVKLK DSPRFSYDER ETRKTGAKFK ETPRLSLDSR
201: SNSFKSARSS SSPEPQELVT GHHRRTTSSV VAKLMGLEVI QDECVTDQVR ENRFCDSPRP TLQKSRSSDS IKKTMMPAKF PMKAAEAATT LTVYGEIQKR
301: LSQLEFKNSE KDLTALKQIL EAMETTQKLM SKDDDNNGLS STNFMQPVLS ATTRSSSIVV TKAATASVFN DTGRSSSASS SPRSVTLPNV KVTNLRQSQR
401: VTPRKQSAMD VTPRLGVYKG QTDSPTKNTA TRALQSKNEM AKSQKPSVSP RTQPKKLGFE KQSRPTSPKP EQNKIQRQQQ LSRQQTESAS LRRKPRGRQQ
501: SEDRLSDESS LRSDSNVSSA SNLDSEVTSR YKYERNIDFK EQHTPKQRSP EMRSLPKPLK VTVEQPSPVS VLDVAFDEDE SPSPVRKISV VFKVIINSVL
601: TFTSQWMNKH KALRRSIVWP ESNGSLNQPD AEFNESIMEE GAESNNGDHK YISEILLASG LLRDIDYSML SIQLHQAHLP INPSLFFVLE QSKTSNVTQH
701: DKKHRGIGFG QQTANLIERS RRKLVFDTIN EILARKFAAE GCTKQPYITS SISQLRRTNK SSKGKELLET MCSEIDRLQD NSKCILDEDD EDLIWEDLQG
801: QGMNWKEIEG ETPGLVLDIE RLIFKDLISE VVTSEVAASP GMLSGKPRQL FNC
001: MSAKLLYNLS DENPNLNKQI GCMNGIFQVF YRQHYPPRRV TGDELKSLPS GKASDNVGDT NISADKKETE KSKKKKTAKE KQRGVSSESS SRLSFSSSPC
101: SSSFSSADIS TTASQFEQPG LSNGENPVRE PTNGSPRWGG LMMPSDIREL VRSSIHKETR TRDEEALSQQ PKSARANVSL LKESSPSRNS NEWSEGRRVV
201: KLKDSPRFSY DERETRKTGA KLKETPRLSL DSRSNSFRSA RSSCSPEPQE LVTGHRRTTS SVVAKLMGLE VIPDEPVTIQ NRENRFCDSP RPTSRVEVDL
301: QRSRGFDSIK KMMPAKFPMK ASPWAQVDGA KNQVKIPDAT TLTVYGEIQK RLSQLEFKKS EKDLRALKQI LEAMEKTQQL ISKDDDDNKT LCSSNFMQRN
401: NQPIPSAINT SSMNFKSSSI VVMKAATAPV FKDTGIAGSA SFSPRNVALP NVKVGNLRQA QKVIPRKQSA MDVTPRPGYY KGQTESTMKN TSTRPLQSKS
501: DMAKSGKIQK PSVSLRTPPK KLGFEKQSRP TSPKPELNKN QRQQLSRQQT ESASPRRKPG IKSRGLQQSE DRLSDESSDL RSLRSDSNVS LASNLDTEVT
601: SRYNYERNSD ITEQHTPKQR SPDLGMRSLS KPLKVTVEQP SPVSVLDVAF DEDDSPSPVR KISIVFKEDD NLSSEESHWM NKNNNLCRSI VWPESNTSLK
701: QPDAELTEGF MEDDAEFKNG DHKYISEIML ASGLLRDIDY SMISIQLHQA HLPINPSLFF VLEQNKTSNV SLQDNKHKGR GFGQQQTVNL VERSKRKLIF
801: DTINEILAHR FAAEGCTKQP SITLSISTQR THEKSSRGEE LLQTLCSEID RLQDNSKCIL DEDDEDLIWE DLQSHGMNWK EIEGETPGLV LDIERLIFKD
901: LIGEVVTSEF AAFPRMLSGQ PRQLFHC
101: SSSFSSADIS TTASQFEQPG LSNGENPVRE PTNGSPRWGG LMMPSDIREL VRSSIHKETR TRDEEALSQQ PKSARANVSL LKESSPSRNS NEWSEGRRVV
201: KLKDSPRFSY DERETRKTGA KLKETPRLSL DSRSNSFRSA RSSCSPEPQE LVTGHRRTTS SVVAKLMGLE VIPDEPVTIQ NRENRFCDSP RPTSRVEVDL
301: QRSRGFDSIK KMMPAKFPMK ASPWAQVDGA KNQVKIPDAT TLTVYGEIQK RLSQLEFKKS EKDLRALKQI LEAMEKTQQL ISKDDDDNKT LCSSNFMQRN
401: NQPIPSAINT SSMNFKSSSI VVMKAATAPV FKDTGIAGSA SFSPRNVALP NVKVGNLRQA QKVIPRKQSA MDVTPRPGYY KGQTESTMKN TSTRPLQSKS
501: DMAKSGKIQK PSVSLRTPPK KLGFEKQSRP TSPKPELNKN QRQQLSRQQT ESASPRRKPG IKSRGLQQSE DRLSDESSDL RSLRSDSNVS LASNLDTEVT
601: SRYNYERNSD ITEQHTPKQR SPDLGMRSLS KPLKVTVEQP SPVSVLDVAF DEDDSPSPVR KISIVFKEDD NLSSEESHWM NKNNNLCRSI VWPESNTSLK
701: QPDAELTEGF MEDDAEFKNG DHKYISEIML ASGLLRDIDY SMISIQLHQA HLPINPSLFF VLEQNKTSNV SLQDNKHKGR GFGQQQTVNL VERSKRKLIF
801: DTINEILAHR FAAEGCTKQP SITLSISTQR THEKSSRGEE LLQTLCSEID RLQDNSKCIL DEDDEDLIWE DLQSHGMNWK EIEGETPGLV LDIERLIFKD
901: LIGEVVTSEF AAFPRMLSGQ PRQLFHC
Arabidopsis Description
LNG1Protein LONGIFOLIA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.