Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001034.1-P | Field mustard | nucleus | 96.38 | 96.38 |
| CDX91979 | Canola | nucleus | 87.28 | 87.49 |
| CDY43253 | Canola | nucleus | 66.16 | 68.15 |
| AT3G02170.1 | Thale cress | nucleus | 71.18 | 67.4 |
| CDY60473 | Canola | nucleus | 63.01 | 65.38 |
| CDX85545 | Canola | nucleus | 46.91 | 50.06 |
| CDX90985 | Canola | nucleus | 48.42 | 48.65 |
| CDX69516 | Canola | nucleus | 50.76 | 48.55 |
| CDY26440 | Canola | nucleus | 48.31 | 46.36 |
| VIT_14s0068g00360.t01 | Wine grape | nucleus | 34.89 | 30.54 |
| CDY42438 | Canola | nucleus | 32.32 | 29.44 |
| CDY49132 | Canola | nucleus | 31.39 | 29.27 |
| KRH45061 | Soybean | nucleus | 30.57 | 26.93 |
| PGSC0003DMT400003717 | Potato | nucleus | 29.29 | 26.56 |
| KRH18379 | Soybean | nucleus | 30.46 | 26.5 |
| CDX81888 | Canola | nucleus | 25.67 | 26.44 |
| CDX83829 | Canola | cytosol | 25.32 | 26.43 |
| KRH01314 | Soybean | nucleus | 29.99 | 26.39 |
| CDX96710 | Canola | nucleus | 26.49 | 25.91 |
| Solyc02g089050.2.1 | Tomato | nucleus | 22.05 | 25.75 |
| KRG93656 | Soybean | nucleus | 29.64 | 25.71 |
| CDY59655 | Canola | nucleus | 24.85 | 25.51 |
| GSMUA_Achr4P32860_001 | Banana | nucleus | 27.89 | 24.46 |
| TraesCS2D01G183400.1 | Wheat | nucleus | 26.72 | 24.0 |
| TraesCS2B01G202300.1 | Wheat | nucleus | 26.49 | 23.89 |
| HORVU2Hr1G032710.2 | Barley | cytosol | 26.6 | 23.87 |
| TraesCS2A01G176000.1 | Wheat | nucleus | 26.49 | 23.7 |
| Os07t0603300-01 | Rice | nucleus | 25.9 | 23.62 |
| TraesCS2B01G281200.2 | Wheat | cytosol | 29.17 | 23.45 |
| GSMUA_Achr7P26670_001 | Banana | nucleus | 18.9 | 23.38 |
| Os07t0109400-01 | Rice | nucleus | 29.64 | 23.32 |
| Os03t0418700-02 | Rice | nucleus | 24.97 | 23.11 |
| HORVU2Hr1G063820.1 | Barley | cytosol | 28.94 | 23.09 |
| KXG36646 | Sorghum | nucleus | 25.79 | 23.04 |
| TraesCS2D01G262900.1 | Wheat | cytosol | 28.82 | 22.96 |
| Zm00001d006828_P001 | Maize | nucleus | 25.55 | 22.93 |
| TraesCS2A01G261000.1 | Wheat | cytosol | 28.7 | 22.93 |
| Zm00001d022072_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 25.32 | 22.82 |
| Solyc02g089030.1.1 | Tomato | nucleus | 1.87 | 22.54 |
| EER98557 | Sorghum | nucleus | 28.35 | 22.42 |
| Zm00001d019700_P006 | Maize | nucleus | 27.42 | 22.07 |
| GSMUA_Achr4P07300_001 | Banana | cytosol | 23.22 | 21.96 |
| KXG39125 | Sorghum | plastid | 23.34 | 21.91 |
| Zm00001d005297_P006 | Maize | nucleus | 27.89 | 21.73 |
| GSMUA_Achr4P14410_001 | Banana | nucleus | 21.35 | 21.08 |
Protein Annotations
| EnsemblPlants:CDX74270 | EnsemblPlantsGene:GSBRNA2T00112057001 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016049 | GO:GO:0040007 | GO:GO:0051513 | InterPro:DUF4378 | InterPro:LNG1/2 | ncoils:Coil |
| PANTHER:PTHR31680 | PANTHER:PTHR31680:SF4 | PFAM:PF14309 | ProteinID:CDX74270 | ProteinID:CDX74270.1 | SEG:seg |
| UniParc:UPI0004EEB4C7 | MapMan:13.4.1.2.2 | : | : | : | : |
Description
BnaA03g27770D
Coordinates
chrLK031800:+:2016183..2019188
Molecular Weight (calculated)
96232.4 Da
IEP (calculated)
9.872
GRAVY (calculated)
-0.795
Length
857 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAKLLYNLS DENPNLNKQF GCMNGILQVF YRQHYPARPV SGHVEKSLPS GERKDLVSEI NMESDKETER ITKKKKKKSA VKDKHRVSSE SSSRPSFSSS
101: PRSSSFSSAE VSTATSQFDQ PGENLTREQL NAGPMMPFDI KELVKGSINR EVRTRRDETV AFTQQQQQQP NSARASMLLL KEASLRSPSR SSSEWNEGRG
201: MAARLRESPR FSYDEREMRN KTGSKLKETP RLSLDSRSSC PPEEPVTMSH RRSNSSVVAK LMGLEVIADN FDTEQRNENR FCDSPRPMSR VEPTSLGRSR
301: SVGSIKKLPA ASKFPLEPAP WKQMKAGDSA LTVYGEIQKR LTQLEFKKAG KDLRALKQIL EAMEKTQQMM DGSRDNTTLM QRTQQPVPAA TSPAMNFKPS
401: LPQNAALPNV NVGNPRQIRK VTSGKQNAMD LTPRPGLYKG QLDSTKSTSP KTLRSRQALA ADSCSMTKSG RSQQQSVSPR RQPKKLGFER QSPPTTPKSE
501: PGKIQRQLGR QQMESVSPRR KQGIKPRSTL QQPDERLGHA SSDLRSLRTD SSISLGSSAD IEVTSRHRLE RNCGFPELHT PNQKSPDFGI RQDRPSLKPL
601: KVTVEQPSPV SVLDAAFDEE DSPSPVRKIS LSFKEDDALR SEESVWIKKP ASVCRSIILP ENNRGPTQQD SDLLKCFSEE DASGDHKYIS EILLASGLLR
701: DLEYSMISIQ LNKARLPINP GLFFILEQNK GMGLRQHQTD PTEIIRRKLI FDTVNEILAQ RFTAEGCTKP QLTANPISTM ENISKGEQLL KTLCLEIDRL
801: QENNSQCILE DDKEDLIWND LQCHGMNLKA FEGETPGIVL DIERMIFRDL VNEVCFC
101: PRSSSFSSAE VSTATSQFDQ PGENLTREQL NAGPMMPFDI KELVKGSINR EVRTRRDETV AFTQQQQQQP NSARASMLLL KEASLRSPSR SSSEWNEGRG
201: MAARLRESPR FSYDEREMRN KTGSKLKETP RLSLDSRSSC PPEEPVTMSH RRSNSSVVAK LMGLEVIADN FDTEQRNENR FCDSPRPMSR VEPTSLGRSR
301: SVGSIKKLPA ASKFPLEPAP WKQMKAGDSA LTVYGEIQKR LTQLEFKKAG KDLRALKQIL EAMEKTQQMM DGSRDNTTLM QRTQQPVPAA TSPAMNFKPS
401: LPQNAALPNV NVGNPRQIRK VTSGKQNAMD LTPRPGLYKG QLDSTKSTSP KTLRSRQALA ADSCSMTKSG RSQQQSVSPR RQPKKLGFER QSPPTTPKSE
501: PGKIQRQLGR QQMESVSPRR KQGIKPRSTL QQPDERLGHA SSDLRSLRTD SSISLGSSAD IEVTSRHRLE RNCGFPELHT PNQKSPDFGI RQDRPSLKPL
601: KVTVEQPSPV SVLDAAFDEE DSPSPVRKIS LSFKEDDALR SEESVWIKKP ASVCRSIILP ENNRGPTQQD SDLLKCFSEE DASGDHKYIS EILLASGLLR
701: DLEYSMISIQ LNKARLPINP GLFFILEQNK GMGLRQHQTD PTEIIRRKLI FDTVNEILAQ RFTAEGCTKP QLTANPISTM ENISKGEQLL KTLCLEIDRL
801: QENNSQCILE DDKEDLIWND LQCHGMNLKA FEGETPGIVL DIERMIFRDL VNEVCFC
001: MSAKLLYNLS DENPNLNKQF GCMNGIFQVF YRQHCPATPV TVSGGAEKSL PPGERRGSVG ETNMESDKET ERSSTKKKKS AAKEKHRVSF ESSSRPSFSS
101: SPRSSSFSSA EVSTTASQFD QPGENLIREQ PNGGLMMPYD LKELVKGSIN REIRTRGEEA SFTQQQQPIS ARSSMLLLKE SSLRSPCRSS NEWNEGRGAA
201: MKFKESHRLS YDEREMRNNG FRVGSKLKET PRLSLDSRSN SFRSPRADAA RSSCPEEPAT MTHRRSSSSV VAKLMGLEVI ADNSDTEQRR ENRFCDSPRP
301: MSRVEPTALQ RSRSVDSIKR IPASAASKFP MEPAPWKQMK AGDSALTVYG EIQKRLTQLE FKKSGKDLRA LKQILEAMEK TQQLIDESRD DGTLSTTTLM
401: QRTHKPVSAA TSPARNFKSS SIVVMKSAAP VSTSPLPQNV TLPNVKVGNS RQTRKVTSGK QNAMDLTPRP GLYKGQLDST KSNSPKTVRS RQALAADAGS
501: MTKSGRSQQH SVSPRTQPKK LGFEKQTRPT TPKSEPGKRQ LGRQQTEVAS PRRKQMIKPH STLQQPDDRL SDARSDLRSL RSDSNISLGS NVDIEVTSRH
601: RLERNCDFPE QHTPKQRSPD FGIKQDRPSL KPLKVTVEQP SPVSVLDAVF DEEDSPSPVR KISLSFKEED ALRSEESEWI NKPTSFCRSV PFPQSNRGPM
701: KPSSDHFECS PEEGADFKSG NHKYILEILL ASGILRDLEY SMISFQLHQT RLPINPGLFF ILEQNKASNV TLPDNKHRGR GFRQQQTNPT ETIRRKLVFD
801: TVNEILARKF TAEGCIKPRL IANPLKKLEK ISKEEQLLQT LCSEIDRLQQ NNSNCILEDD EEDIIWEDLQ SQSMNLKEFE GETPGIVLDI ERMIFRDLVN
901: EVCFC
101: SPRSSSFSSA EVSTTASQFD QPGENLIREQ PNGGLMMPYD LKELVKGSIN REIRTRGEEA SFTQQQQPIS ARSSMLLLKE SSLRSPCRSS NEWNEGRGAA
201: MKFKESHRLS YDEREMRNNG FRVGSKLKET PRLSLDSRSN SFRSPRADAA RSSCPEEPAT MTHRRSSSSV VAKLMGLEVI ADNSDTEQRR ENRFCDSPRP
301: MSRVEPTALQ RSRSVDSIKR IPASAASKFP MEPAPWKQMK AGDSALTVYG EIQKRLTQLE FKKSGKDLRA LKQILEAMEK TQQLIDESRD DGTLSTTTLM
401: QRTHKPVSAA TSPARNFKSS SIVVMKSAAP VSTSPLPQNV TLPNVKVGNS RQTRKVTSGK QNAMDLTPRP GLYKGQLDST KSNSPKTVRS RQALAADAGS
501: MTKSGRSQQH SVSPRTQPKK LGFEKQTRPT TPKSEPGKRQ LGRQQTEVAS PRRKQMIKPH STLQQPDDRL SDARSDLRSL RSDSNISLGS NVDIEVTSRH
601: RLERNCDFPE QHTPKQRSPD FGIKQDRPSL KPLKVTVEQP SPVSVLDAVF DEEDSPSPVR KISLSFKEED ALRSEESEWI NKPTSFCRSV PFPQSNRGPM
701: KPSSDHFECS PEEGADFKSG NHKYILEILL ASGILRDLEY SMISFQLHQT RLPINPGLFF ILEQNKASNV TLPDNKHRGR GFRQQQTNPT ETIRRKLVFD
801: TVNEILARKF TAEGCIKPRL IANPLKKLEK ISKEEQLLQT LCSEIDRLQQ NNSNCILEDD EEDIIWEDLQ SQSMNLKEFE GETPGIVLDI ERMIFRDLVN
901: EVCFC
Arabidopsis Description
LNG2Protein LONGIFOLIA 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S823]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.