Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY59655 | Canola | nucleus | 82.21 | 81.92 |
| CDX83829 | Canola | cytosol | 55.17 | 55.91 |
| CDX96710 | Canola | nucleus | 58.29 | 55.37 |
| AT1G18620.2 | Thale cress | nucleus | 62.86 | 51.58 |
| CDY42438 | Canola | nucleus | 56.73 | 50.16 |
| CDY49132 | Canola | nucleus | 54.93 | 49.73 |
| VIT_17s0000g05210.t01 | Wine grape | cytosol | 45.31 | 34.3 |
| KRH54713 | Soybean | nucleus | 45.19 | 34.06 |
| KRH63201 | Soybean | nucleus | 44.83 | 33.88 |
| Solyc03g115000.2.1 | Tomato | nucleus | 42.67 | 32.51 |
| PGSC0003DMT400063076 | Potato | nucleus | 42.31 | 32.23 |
| KRH56796 | Soybean | nucleus | 40.26 | 31.87 |
| KRH03155 | Soybean | nucleus | 39.42 | 31.24 |
| GSMUA_Achr4P32860_001 | Banana | nucleus | 34.5 | 29.38 |
| CDX85545 | Canola | nucleus | 27.04 | 28.02 |
| CDY60473 | Canola | nucleus | 27.4 | 27.6 |
| Os07t0603300-01 | Rice | nucleus | 30.89 | 27.34 |
| CDX90985 | Canola | nucleus | 28.0 | 27.32 |
| KXG36646 | Sorghum | nucleus | 31.01 | 26.9 |
| CDX69516 | Canola | nucleus | 28.85 | 26.79 |
| TraesCS2D01G183400.1 | Wheat | nucleus | 30.65 | 26.73 |
| HORVU2Hr1G032710.2 | Barley | cytosol | 30.53 | 26.6 |
| TraesCS2B01G202300.1 | Wheat | nucleus | 30.17 | 26.42 |
| Zm00001d022072_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 30.17 | 26.39 |
| TraesCS2A01G176000.1 | Wheat | nucleus | 30.17 | 26.2 |
| CDX91979 | Canola | nucleus | 26.92 | 26.2 |
| CDY43253 | Canola | nucleus | 26.08 | 26.08 |
| Zm00001d006828_P001 | Maize | nucleus | 29.81 | 25.97 |
| CDX74270 | Canola | nucleus | 26.44 | 25.67 |
| GSMUA_Achr4P07300_001 | Banana | cytosol | 27.64 | 25.39 |
| CDY26440 | Canola | nucleus | 27.16 | 25.31 |
| Os03t0418700-02 | Rice | nucleus | 28.0 | 25.16 |
| EER98557 | Sorghum | nucleus | 31.97 | 24.54 |
| TraesCS2B01G281200.2 | Wheat | cytosol | 31.37 | 24.48 |
| Zm00001d019700_P006 | Maize | nucleus | 31.13 | 24.32 |
| TraesCS2D01G262900.1 | Wheat | cytosol | 31.37 | 24.26 |
| HORVU2Hr1G063820.1 | Barley | cytosol | 31.25 | 24.21 |
| TraesCS2A01G261000.1 | Wheat | cytosol | 31.13 | 24.14 |
| GSMUA_Achr7P26670_001 | Banana | nucleus | 20.07 | 24.1 |
| Os07t0109400-01 | Rice | nucleus | 31.13 | 23.78 |
| GSMUA_Achr4P14410_001 | Banana | nucleus | 24.4 | 23.39 |
| Zm00001d005297_P006 | Maize | nucleus | 30.89 | 23.36 |
| KXG39125 | Sorghum | plastid | 25.12 | 22.89 |
Protein Annotations
| EnsemblPlants:CDX81888 | EnsemblPlantsGene:GSBRNA2T00136842001 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016049 | GO:GO:0040007 | GO:GO:0051513 | InterPro:DUF3741-assoc | InterPro:DUF4378 | InterPro:LNG1/2 |
| ncoils:Coil | PANTHER:PTHR31680 | PANTHER:PTHR31680:SF3 | PFAM:PF14309 | PFAM:PF14383 | ProteinID:CDX81888 |
| ProteinID:CDX81888.1 | SEG:seg | UniParc:UPI0004EF1B34 | MapMan:13.4.1.2.2 | : | : |
Description
BnaC08g37130D
Coordinates
chrLK031826:+:1279511..1283135
Molecular Weight (calculated)
93081.0 Da
IEP (calculated)
9.929
GRAVY (calculated)
-0.742
Length
832 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAKLLHTLA DENSDLQKKI GCMNGIFQIF DRHNHLLSNR RKSLTLGNIN FERDSALQIQ DSNIINTGNE TSEKLTRVST ESSRVSFSSS CSSSSPLSSD
101: LNKETQPEIS PYDHRVIFQE SPAMSQGSGL GLDLRDVVRD SIYREARGLS EVSRHNKRRD DSPRPPPYGL KQSTPVDFNE SCKALAKLNT SQYYYNEVDL
201: KDASRYYVDS HKKKSKSKNK VKESPKLSLD SRDHLDLKSG NNNKLVESFS RSSNVNKRPP SVVAKLMGLE TLPGSPLRRD TKLNSDPFSR SLRENSMNRT
301: IRLSPSSPRS VGKDLASSSF TSSPRWRSSE FVIKPLSSLR FPIEPAPWKK QQKQACRPLL KDLEFKHSVK DLRAINEIVE AMQTKSVKQQ ECSTSSRGLE
401: SHVMPSSTMR GGPIVIMKPA RLVGVPSPSL IPIHSLNREE EGSVNVKRNL RSSQVTAKSA SPRLSHMKKH ENEKYSRPPP IPSDSSKSRR QTNRKLEESA
501: TSPGGSRRSR QAGGGKSSSV IETAKTVVSN LMQNASPKSS GDGSSEHPSP VSVLNASIYR DIKPSQASEG TKTDEEDEWN PAYSFSKTTT TLSPEVNRKK
601: LQNVEHLVQK LKRLNSSHDE ASQDYIASLC ENSGADTDHR YISEILLASG LLLRDLASES TTFQLHSSGH PINPELFLVL EQTKGSSGGG NEKKLNRKVV
701: FDAVNEMLVK KLAIVDVEPW MKRGKGMKRR VFSAQQLLKE LCSEIETVQK EAKRRSDNLF LLGEQEEDFL KCILDEDMEM RSEKWTEFDD VVPGIVLHLE
801: RLLFKDLVSE VVHGEIDRLQ PTPSRRVVIT DS
101: LNKETQPEIS PYDHRVIFQE SPAMSQGSGL GLDLRDVVRD SIYREARGLS EVSRHNKRRD DSPRPPPYGL KQSTPVDFNE SCKALAKLNT SQYYYNEVDL
201: KDASRYYVDS HKKKSKSKNK VKESPKLSLD SRDHLDLKSG NNNKLVESFS RSSNVNKRPP SVVAKLMGLE TLPGSPLRRD TKLNSDPFSR SLRENSMNRT
301: IRLSPSSPRS VGKDLASSSF TSSPRWRSSE FVIKPLSSLR FPIEPAPWKK QQKQACRPLL KDLEFKHSVK DLRAINEIVE AMQTKSVKQQ ECSTSSRGLE
401: SHVMPSSTMR GGPIVIMKPA RLVGVPSPSL IPIHSLNREE EGSVNVKRNL RSSQVTAKSA SPRLSHMKKH ENEKYSRPPP IPSDSSKSRR QTNRKLEESA
501: TSPGGSRRSR QAGGGKSSSV IETAKTVVSN LMQNASPKSS GDGSSEHPSP VSVLNASIYR DIKPSQASEG TKTDEEDEWN PAYSFSKTTT TLSPEVNRKK
601: LQNVEHLVQK LKRLNSSHDE ASQDYIASLC ENSGADTDHR YISEILLASG LLLRDLASES TTFQLHSSGH PINPELFLVL EQTKGSSGGG NEKKLNRKVV
701: FDAVNEMLVK KLAIVDVEPW MKRGKGMKRR VFSAQQLLKE LCSEIETVQK EAKRRSDNLF LLGEQEEDFL KCILDEDMEM RSEKWTEFDD VVPGIVLHLE
801: RLLFKDLVSE VVHGEIDRLQ PTPSRRVVIT DS
001: MAAKLLHTLA DENSDLQKKI GCMNGIFQIF DRHHILTSRR KSLTLGNAHV NSINFERDSV DAICQQRSAF QCQDSNLVSS NGLSEKLTRL STECSRVSFS
101: SSCSSSSPLS SEVNREVQPE ISADDRVIFP ESPTSDPVMS QGTGARVGLD LRDVVRDSMY REARGLSDVC RQNRREDSPR PYGLKQSRPV DFNESCRALA
201: KLRKTSHHYY NEVDMKDTSR YYVDSRGKSK SGKKLKELPR LSLDSRDHVD LKSGNKLSES FSRSSSMNKV SGSPKRPPSV VAKLMGLETL PGSPLSRDRF
301: NMFDDNSDPF ARSLRENSLN RSLRFSPSSP RSLGKDPAAS SSSPRWRSSE FVMKPLSSLR YPIEPAPWKQ TERNRFSQKQ ACRSVKSLSQ SMEGKLKDLE
401: VKHSGKDLRA LKDILEAMQS KGLFDTRKQQ QCSNLEAQRD YELADSATSK HDSIDLRNPV IPSNMRGPIV IMKPARLVEK SGIPSSSLIP IHSLSGLNKT
501: CREEPVNVRR SSTSRKAVKD RSPGNQRAEP CISSDKKSSS RNVMSSQVYK ESTSKNSGPA SSKLQQMKPE HDKRSRPPAS PSDSSKLRKQ ISRQPVESTT
601: SPGGRRSRPR DQRSLQQNDG QLSQMSNKSR TKIEATLSIE NGGKSPSVIE AAKAVVSNLI QNKSSPTFSE DGSSEHPSPV SVLNAEIYRE IEPSPVKIQA
701: SEGSVNGSIN SGVEHCEEDQ WNPAYSFSKT TTSFSPEMNR KKLQNVEHLV QKLKRLNSSH DETSQDYIAS LCENSDPDTD HRYISEILLA SGLLLRDLGS
801: GLTTFQLHPS GHPINPELFL VIEQTKGCSS SSNEKINRKL VFDAVNEMLG KKLAFVESYV DPWMKQAKAR KKVLSAQNLL KELCSEIEIL QKQAKKRSEN
901: LLLLEEEEEE EEDFLKCILD EDMAIQSEKW TDFDDAIPGL VLDMERLLFK DLVKEIVHGE IDRLQGNSRR QKTVLADE
101: SSCSSSSPLS SEVNREVQPE ISADDRVIFP ESPTSDPVMS QGTGARVGLD LRDVVRDSMY REARGLSDVC RQNRREDSPR PYGLKQSRPV DFNESCRALA
201: KLRKTSHHYY NEVDMKDTSR YYVDSRGKSK SGKKLKELPR LSLDSRDHVD LKSGNKLSES FSRSSSMNKV SGSPKRPPSV VAKLMGLETL PGSPLSRDRF
301: NMFDDNSDPF ARSLRENSLN RSLRFSPSSP RSLGKDPAAS SSSPRWRSSE FVMKPLSSLR YPIEPAPWKQ TERNRFSQKQ ACRSVKSLSQ SMEGKLKDLE
401: VKHSGKDLRA LKDILEAMQS KGLFDTRKQQ QCSNLEAQRD YELADSATSK HDSIDLRNPV IPSNMRGPIV IMKPARLVEK SGIPSSSLIP IHSLSGLNKT
501: CREEPVNVRR SSTSRKAVKD RSPGNQRAEP CISSDKKSSS RNVMSSQVYK ESTSKNSGPA SSKLQQMKPE HDKRSRPPAS PSDSSKLRKQ ISRQPVESTT
601: SPGGRRSRPR DQRSLQQNDG QLSQMSNKSR TKIEATLSIE NGGKSPSVIE AAKAVVSNLI QNKSSPTFSE DGSSEHPSPV SVLNAEIYRE IEPSPVKIQA
701: SEGSVNGSIN SGVEHCEEDQ WNPAYSFSKT TTSFSPEMNR KKLQNVEHLV QKLKRLNSSH DETSQDYIAS LCENSDPDTD HRYISEILLA SGLLLRDLGS
801: GLTTFQLHPS GHPINPELFL VIEQTKGCSS SSNEKINRKL VFDAVNEMLG KKLAFVESYV DPWMKQAKAR KKVLSAQNLL KELCSEIEIL QKQAKKRSEN
901: LLLLEEEEEE EEDFLKCILD EDMAIQSEKW TDFDDAIPGL VLDMERLLFK DLVKEIVHGE IDRLQGNSRR QKTVLADE
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1); Has 1987 Blast hits to 1263 proteins in 207 species: Archae - 0; Bacteria - 172; Metazoa - 665; Fungi - 149; Plants - 271; Viruses - 6; Other Eukaryotes /.../ (source: NCBI BLink). [Source:TAIR;Acc:AT1G18620]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.