Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G183400.1 | Wheat | nucleus | 95.37 | 94.97 |
| TraesCS2A01G176000.1 | Wheat | nucleus | 93.89 | 93.11 |
| HORVU2Hr1G032710.2 | Barley | cytosol | 92.0 | 91.52 |
| Os07t0603300-01 | Rice | nucleus | 72.21 | 72.98 |
| KXG36646 | Sorghum | nucleus | 68.32 | 67.67 |
| Zm00001d006828_P001 | Maize | nucleus | 66.53 | 66.18 |
| Zm00001d022072_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 65.16 | 65.09 |
| Solyc02g089030.1.1 | Tomato | nucleus | 2.32 | 30.99 |
| CDY42438 | Canola | nucleus | 30.21 | 30.5 |
| CDX81888 | Canola | nucleus | 26.42 | 30.17 |
| Bra031037.1-P | Field mustard | nucleus | 26.32 | 29.94 |
| CDY59655 | Canola | nucleus | 26.32 | 29.94 |
| CDY49132 | Canola | nucleus | 28.74 | 29.71 |
| Bra008136.1-P | Field mustard | nucleus | 29.89 | 28.29 |
| Bra039160.1-P | Field mustard | nucleus | 24.21 | 28.05 |
| CDX83829 | Canola | cytosol | 24.11 | 27.89 |
| CDY43253 | Canola | nucleus | 24.11 | 27.52 |
| CDX85545 | Canola | nucleus | 23.26 | 27.52 |
| CDX91979 | Canola | nucleus | 24.74 | 27.49 |
| VIT_14s0068g00360.t01 | Wine grape | nucleus | 28.21 | 27.37 |
| CDY60473 | Canola | nucleus | 23.79 | 27.36 |
| KRH54713 | Soybean | nucleus | 31.79 | 27.36 |
| KRH63201 | Soybean | nucleus | 31.68 | 27.34 |
| AT1G74160.1 | Thale cress | nucleus | 29.37 | 27.22 |
| VIT_17s0000g05210.t01 | Wine grape | cytosol | 31.37 | 27.12 |
| Bra023526.1-P | Field mustard | nucleus | 24.11 | 26.91 |
| CDX69516 | Canola | nucleus | 25.37 | 26.9 |
| CDX96710 | Canola | nucleus | 24.74 | 26.83 |
| Bra001034.1-P | Field mustard | nucleus | 24.11 | 26.72 |
| GSMUA_Achr4P07300_001 | Banana | cytosol | 25.47 | 26.71 |
| Bra008689.1-P | Field mustard | nucleus | 25.16 | 26.67 |
| CDX74270 | Canola | nucleus | 23.89 | 26.49 |
| KRG93656 | Soybean | nucleus | 27.16 | 26.11 |
| KRH18379 | Soybean | nucleus | 27.05 | 26.09 |
| CDX90985 | Canola | nucleus | 23.26 | 25.91 |
| AT5G15580.1 | Thale cress | nucleus | 25.26 | 25.89 |
| Solyc03g115000.2.1 | Tomato | nucleus | 29.37 | 25.55 |
| PGSC0003DMT400063076 | Potato | nucleus | 29.26 | 25.46 |
| AT1G18620.2 | Thale cress | nucleus | 27.16 | 25.44 |
| AT3G02170.1 | Thale cress | nucleus | 24.11 | 25.3 |
| KRH56796 | Soybean | nucleus | 27.89 | 25.21 |
| CDY26440 | Canola | nucleus | 23.58 | 25.08 |
| KRH03155 | Soybean | nucleus | 27.68 | 25.05 |
| KRH01314 | Soybean | nucleus | 25.37 | 24.74 |
| GSMUA_Achr7P26670_001 | Banana | nucleus | 18.0 | 24.68 |
| GSMUA_Achr4P14410_001 | Banana | nucleus | 22.42 | 24.54 |
| TraesCS2B01G281200.2 | Wheat | cytosol | 27.26 | 24.3 |
| PGSC0003DMT400003717 | Potato | nucleus | 24.0 | 24.13 |
| KRH45061 | Soybean | nucleus | 24.63 | 24.05 |
| Solyc02g089050.2.1 | Tomato | nucleus | 17.26 | 22.34 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G202300.1 | EnsemblPlantsGene:TraesCS2B01G202300 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016049 | GO:GO:0040007 | GO:GO:0051513 | InterPro:DUF4378 | InterPro:LNG1/2 | ncoils:Coil |
| PANTHER:PTHR31680 | PANTHER:PTHR31680:SF4 | PFAM:PF14309 | SEG:seg | MapMan:13.4.1.2.2 | : |
Description
No Description!
Coordinates
chr2B:-:182011592..182016808
Molecular Weight (calculated)
104651.0 Da
IEP (calculated)
9.701
GRAVY (calculated)
-0.769
Length
950 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVARRVLNA FADDMPEFDR RQMGCMAGIF QIFDRQRMLT ARRAGAGGRQ PQQKRLPAGR TPPESSSNVP VQCSSTPKII LEKTLSKSMT ENSSLSIESS
101: RASCSSSSCS SFSSIDGSKS AQQELPYISE ELFPQRSPKS SPSLKGADMD TKTAQPNVGF RDIVKDSINR DSGGLTVMTT ANGARRNAQY KDSPRPLLLS
201: KSMDGTYVIS IDRTTKAVPA NVVESSRRFP EQSRFSCDDR RLLRPAETQE AKKPPSTRAK ELPRLSLDSR KESLSPSSRL KSYSYRRTDD SLLDALKPQD
301: SPGHRRSNSV IAKLMGLEEA PDAMGMLIAD SYEPARSPRT AAQATRSERP SRSPRRDCQD ACGSLPKNEP SALKTRPPPR ILTEAAPWRQ QERGGSATNS
401: KASQCRDAEV RPRTASLYAD IERRLGGLEF SECNKDFRAL RILGALHAKD AKHQNNDGDA ASVASQSQEE DSATTSSRSF QSPIVVMKPA RTTEKPGVAP
501: LAGLRGLRKL QPRDSSFTDK SEASTNEKIH SRVARAQSKS DEPTSRASSP RPAGSSSPRL VQRKAESERR SRPPVSPKSP SKKANEAASP RGRTRSKPSQ
601: VKSNRDNEVS QSPGRRISLA KQIDVSIMDC QNPLAARSSF IDPKTPSQKS PSSILGSDHK IHSLENALSP VSVLDTSFYH KSISDSFKDG ETHTSDECWN
701: SNSLPDTPQS KTSSEASQIK PENLEALIQK LEQLQSMNDE AANSKDHQYI YEILLASGLL HKELSFAAMP AQLSPSSCPI NPELFLILEQ TKPHFISATQ
801: AVTGAKKSSD PNMEKLHRRI VFDLVNEIIA QKMNMYSSAS GTAKLLRSRK LSGWRLFKEL CTEVDRLLSE SSAAKCSEED EDENIPLSED ALYEMKDWGS
901: PEGELQGMVL DIERSIFRDL IDEVIGGEAT ERMQAGQWKL RRQLSFSSIN
101: RASCSSSSCS SFSSIDGSKS AQQELPYISE ELFPQRSPKS SPSLKGADMD TKTAQPNVGF RDIVKDSINR DSGGLTVMTT ANGARRNAQY KDSPRPLLLS
201: KSMDGTYVIS IDRTTKAVPA NVVESSRRFP EQSRFSCDDR RLLRPAETQE AKKPPSTRAK ELPRLSLDSR KESLSPSSRL KSYSYRRTDD SLLDALKPQD
301: SPGHRRSNSV IAKLMGLEEA PDAMGMLIAD SYEPARSPRT AAQATRSERP SRSPRRDCQD ACGSLPKNEP SALKTRPPPR ILTEAAPWRQ QERGGSATNS
401: KASQCRDAEV RPRTASLYAD IERRLGGLEF SECNKDFRAL RILGALHAKD AKHQNNDGDA ASVASQSQEE DSATTSSRSF QSPIVVMKPA RTTEKPGVAP
501: LAGLRGLRKL QPRDSSFTDK SEASTNEKIH SRVARAQSKS DEPTSRASSP RPAGSSSPRL VQRKAESERR SRPPVSPKSP SKKANEAASP RGRTRSKPSQ
601: VKSNRDNEVS QSPGRRISLA KQIDVSIMDC QNPLAARSSF IDPKTPSQKS PSSILGSDHK IHSLENALSP VSVLDTSFYH KSISDSFKDG ETHTSDECWN
701: SNSLPDTPQS KTSSEASQIK PENLEALIQK LEQLQSMNDE AANSKDHQYI YEILLASGLL HKELSFAAMP AQLSPSSCPI NPELFLILEQ TKPHFISATQ
801: AVTGAKKSSD PNMEKLHRRI VFDLVNEIIA QKMNMYSSAS GTAKLLRSRK LSGWRLFKEL CTEVDRLLSE SSAAKCSEED EDENIPLSED ALYEMKDWGS
901: PEGELQGMVL DIERSIFRDL IDEVIGGEAT ERMQAGQWKL RRQLSFSSIN
001: MAAKLLHTLA DENSDLQKKI GCMNGIFQIF DRHHILTSRR KSLTLGNAHV NSINFERDSV DAICQQRSAF QCQDSNLVSS NGLSEKLTRL STECSRVSFS
101: SSCSSSSPLS SEVNREVQPE ISADDRVIFP ESPTSDPVMS QGTGARVGLD LRDVVRDSMY REARGLSDVC RQNRREDSPR PYGLKQSRPV DFNESCRALA
201: KLRKTSHHYY NEVDMKDTSR YYVDSRGKSK SGKKLKELPR LSLDSRDHVD LKSGNKLSES FSRSSSMNKV SGSPKRPPSV VAKLMGLETL PGSPLSRDRF
301: NMFDDNSDPF ARSLRENSLN RSLRFSPSSP RSLGKDPAAS SSSPRWRSSE FVMKPLSSLR YPIEPAPWKQ TERNRFSQKQ ACRSVKSLSQ SMEGKLKDLE
401: VKHSGKDLRA LKDILEAMQS KGLFDTRKQQ QCSNLEAQRD YELADSATSK HDSIDLRNPV IPSNMRGPIV IMKPARLVEK SGIPSSSLIP IHSLSGLNKT
501: CREEPVNVRR SSTSRKAVKD RSPGNQRAEP CISSDKKSSS RNVMSSQVYK ESTSKNSGPA SSKLQQMKPE HDKRSRPPAS PSDSSKLRKQ ISRQPVESTT
601: SPGGRRSRPR DQRSLQQNDG QLSQMSNKSR TKIEATLSIE NGGKSPSVIE AAKAVVSNLI QNKSSPTFSE DGSSEHPSPV SVLNAEIYRE IEPSPVKIQA
701: SEGSVNGSIN SGVEHCEEDQ WNPAYSFSKT TTSFSPEMNR KKLQNVEHLV QKLKRLNSSH DETSQDYIAS LCENSDPDTD HRYISEILLA SGLLLRDLGS
801: GLTTFQLHPS GHPINPELFL VIEQTKGCSS SSNEKINRKL VFDAVNEMLG KKLAFVESYV DPWMKQAKAR KKVLSAQNLL KELCSEIEIL QKQAKKRSEN
901: LLLLEEEEEE EEDFLKCILD EDMAIQSEKW TDFDDAIPGL VLDMERLLFK DLVKEIVHGE IDRLQGNSRR QKTVLADE
101: SSCSSSSPLS SEVNREVQPE ISADDRVIFP ESPTSDPVMS QGTGARVGLD LRDVVRDSMY REARGLSDVC RQNRREDSPR PYGLKQSRPV DFNESCRALA
201: KLRKTSHHYY NEVDMKDTSR YYVDSRGKSK SGKKLKELPR LSLDSRDHVD LKSGNKLSES FSRSSSMNKV SGSPKRPPSV VAKLMGLETL PGSPLSRDRF
301: NMFDDNSDPF ARSLRENSLN RSLRFSPSSP RSLGKDPAAS SSSPRWRSSE FVMKPLSSLR YPIEPAPWKQ TERNRFSQKQ ACRSVKSLSQ SMEGKLKDLE
401: VKHSGKDLRA LKDILEAMQS KGLFDTRKQQ QCSNLEAQRD YELADSATSK HDSIDLRNPV IPSNMRGPIV IMKPARLVEK SGIPSSSLIP IHSLSGLNKT
501: CREEPVNVRR SSTSRKAVKD RSPGNQRAEP CISSDKKSSS RNVMSSQVYK ESTSKNSGPA SSKLQQMKPE HDKRSRPPAS PSDSSKLRKQ ISRQPVESTT
601: SPGGRRSRPR DQRSLQQNDG QLSQMSNKSR TKIEATLSIE NGGKSPSVIE AAKAVVSNLI QNKSSPTFSE DGSSEHPSPV SVLNAEIYRE IEPSPVKIQA
701: SEGSVNGSIN SGVEHCEEDQ WNPAYSFSKT TTSFSPEMNR KKLQNVEHLV QKLKRLNSSH DETSQDYIAS LCENSDPDTD HRYISEILLA SGLLLRDLGS
801: GLTTFQLHPS GHPINPELFL VIEQTKGCSS SSNEKINRKL VFDAVNEMLG KKLAFVESYV DPWMKQAKAR KKVLSAQNLL KELCSEIEIL QKQAKKRSEN
901: LLLLEEEEEE EEDFLKCILD EDMAIQSEKW TDFDDAIPGL VLDMERLLFK DLVKEIVHGE IDRLQGNSRR QKTVLADE
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1); Has 1987 Blast hits to 1263 proteins in 207 species: Archae - 0; Bacteria - 172; Metazoa - 665; Fungi - 149; Plants - 271; Viruses - 6; Other Eukaryotes /.../ (source: NCBI BLink). [Source:TAIR;Acc:AT1G18620]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.