Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69516 | Canola | nucleus | 77.45 | 80.13 |
| Bra008689.1-P | Field mustard | nucleus | 77.02 | 79.69 |
| CDY26440 | Canola | nucleus | 70.87 | 73.57 |
| AT3G02170.1 | Thale cress | nucleus | 53.83 | 55.14 |
| VIT_14s0068g00360.t01 | Wine grape | nucleus | 35.71 | 33.81 |
| Solyc02g089030.1.1 | Tomato | nucleus | 2.59 | 33.8 |
| KRH01314 | Soybean | nucleus | 30.64 | 29.16 |
| KRH45061 | Soybean | nucleus | 30.31 | 28.88 |
| KRG93656 | Soybean | nucleus | 29.99 | 28.14 |
| KRH18379 | Soybean | nucleus | 29.56 | 27.82 |
| AT1G74160.1 | Thale cress | nucleus | 30.42 | 27.51 |
| PGSC0003DMT400003717 | Potato | nucleus | 26.86 | 26.35 |
| GSMUA_Achr4P32860_001 | Banana | nucleus | 27.18 | 25.79 |
| TraesCS2B01G281200.2 | Wheat | cytosol | 29.45 | 25.61 |
| HORVU2Hr1G032710.2 | Barley | cytosol | 26.21 | 25.45 |
| Solyc02g089050.2.1 | Tomato | nucleus | 20.06 | 25.34 |
| TraesCS2B01G202300.1 | Wheat | nucleus | 25.89 | 25.26 |
| TraesCS2D01G183400.1 | Wheat | nucleus | 26.0 | 25.26 |
| TraesCS2A01G176000.1 | Wheat | nucleus | 26.11 | 25.26 |
| HORVU2Hr1G063820.1 | Barley | cytosol | 29.13 | 25.14 |
| TraesCS2D01G262900.1 | Wheat | cytosol | 29.13 | 25.09 |
| TraesCS2A01G261000.1 | Wheat | cytosol | 28.91 | 24.98 |
| GSMUA_Achr7P26670_001 | Banana | nucleus | 18.66 | 24.96 |
| Os07t0603300-01 | Rice | nucleus | 24.92 | 24.57 |
| Zm00001d019700_P006 | Maize | nucleus | 28.05 | 24.41 |
| Os03t0418700-02 | Rice | nucleus | 24.27 | 24.3 |
| Os07t0109400-01 | Rice | nucleus | 28.48 | 24.24 |
| EER98557 | Sorghum | nucleus | 28.26 | 24.17 |
| AT1G18620.2 | Thale cress | nucleus | 25.89 | 23.67 |
| Zm00001d005297_P006 | Maize | nucleus | 27.72 | 23.36 |
| KXG36646 | Sorghum | nucleus | 24.16 | 23.36 |
| Zm00001d006828_P001 | Maize | nucleus | 23.95 | 23.25 |
| GSMUA_Achr4P07300_001 | Banana | cytosol | 22.55 | 23.07 |
| Zm00001d022072_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 23.19 | 22.61 |
| KXG39125 | Sorghum | plastid | 21.14 | 21.47 |
| GSMUA_Achr4P14410_001 | Banana | nucleus | 19.63 | 20.97 |
Protein Annotations
| MapMan:13.4.1.2.2 | EntrezGene:831411 | UniProt:A0A178UF83 | ProteinID:AED92180.1 | EMBL:AK228825 | ArrayExpress:AT5G15580 |
| EnsemblPlantsGene:AT5G15580 | RefSeq:AT5G15580 | TAIR:AT5G15580 | RefSeq:AT5G15580-TAIR-G | EnsemblPlants:AT5G15580.1 | TAIR:AT5G15580.1 |
| Unigene:At.24634 | ProteinID:CAC01757.1 | ncoils:Coil | InterPro:DUF4378 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016049 |
| GO:GO:0040007 | GO:GO:0051513 | Symbol:LNG1 | InterPro:LNG1/2 | RefSeq:NP_197062.1 | ProteinID:OAO92355.1 |
| PFAM:PF14309 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020121 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR31680 | PANTHER:PTHR31680:SF4 | UniProt:Q9LF24 | UniParc:UPI00000A180B | SEG:seg |
Description
LNG1Protein LONGIFOLIA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF24]
Coordinates
chr5:-:5068237..5072492
Molecular Weight (calculated)
104094.0 Da
IEP (calculated)
9.582
GRAVY (calculated)
-0.837
Length
927 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAKLLYNLS DENPNLNKQI GCMNGIFQVF YRQHYPPRRV TGDELKSLPS GKASDNVGDT NISADKKETE KSKKKKTAKE KQRGVSSESS SRLSFSSSPC
101: SSSFSSADIS TTASQFEQPG LSNGENPVRE PTNGSPRWGG LMMPSDIREL VRSSIHKETR TRDEEALSQQ PKSARANVSL LKESSPSRNS NEWSEGRRVV
201: KLKDSPRFSY DERETRKTGA KLKETPRLSL DSRSNSFRSA RSSCSPEPQE LVTGHRRTTS SVVAKLMGLE VIPDEPVTIQ NRENRFCDSP RPTSRVEVDL
301: QRSRGFDSIK KMMPAKFPMK ASPWAQVDGA KNQVKIPDAT TLTVYGEIQK RLSQLEFKKS EKDLRALKQI LEAMEKTQQL ISKDDDDNKT LCSSNFMQRN
401: NQPIPSAINT SSMNFKSSSI VVMKAATAPV FKDTGIAGSA SFSPRNVALP NVKVGNLRQA QKVIPRKQSA MDVTPRPGYY KGQTESTMKN TSTRPLQSKS
501: DMAKSGKIQK PSVSLRTPPK KLGFEKQSRP TSPKPELNKN QRQQLSRQQT ESASPRRKPG IKSRGLQQSE DRLSDESSDL RSLRSDSNVS LASNLDTEVT
601: SRYNYERNSD ITEQHTPKQR SPDLGMRSLS KPLKVTVEQP SPVSVLDVAF DEDDSPSPVR KISIVFKEDD NLSSEESHWM NKNNNLCRSI VWPESNTSLK
701: QPDAELTEGF MEDDAEFKNG DHKYISEIML ASGLLRDIDY SMISIQLHQA HLPINPSLFF VLEQNKTSNV SLQDNKHKGR GFGQQQTVNL VERSKRKLIF
801: DTINEILAHR FAAEGCTKQP SITLSISTQR THEKSSRGEE LLQTLCSEID RLQDNSKCIL DEDDEDLIWE DLQSHGMNWK EIEGETPGLV LDIERLIFKD
901: LIGEVVTSEF AAFPRMLSGQ PRQLFHC
101: SSSFSSADIS TTASQFEQPG LSNGENPVRE PTNGSPRWGG LMMPSDIREL VRSSIHKETR TRDEEALSQQ PKSARANVSL LKESSPSRNS NEWSEGRRVV
201: KLKDSPRFSY DERETRKTGA KLKETPRLSL DSRSNSFRSA RSSCSPEPQE LVTGHRRTTS SVVAKLMGLE VIPDEPVTIQ NRENRFCDSP RPTSRVEVDL
301: QRSRGFDSIK KMMPAKFPMK ASPWAQVDGA KNQVKIPDAT TLTVYGEIQK RLSQLEFKKS EKDLRALKQI LEAMEKTQQL ISKDDDDNKT LCSSNFMQRN
401: NQPIPSAINT SSMNFKSSSI VVMKAATAPV FKDTGIAGSA SFSPRNVALP NVKVGNLRQA QKVIPRKQSA MDVTPRPGYY KGQTESTMKN TSTRPLQSKS
501: DMAKSGKIQK PSVSLRTPPK KLGFEKQSRP TSPKPELNKN QRQQLSRQQT ESASPRRKPG IKSRGLQQSE DRLSDESSDL RSLRSDSNVS LASNLDTEVT
601: SRYNYERNSD ITEQHTPKQR SPDLGMRSLS KPLKVTVEQP SPVSVLDVAF DEDDSPSPVR KISIVFKEDD NLSSEESHWM NKNNNLCRSI VWPESNTSLK
701: QPDAELTEGF MEDDAEFKNG DHKYISEIML ASGLLRDIDY SMISIQLHQA HLPINPSLFF VLEQNKTSNV SLQDNKHKGR GFGQQQTVNL VERSKRKLIF
801: DTINEILAHR FAAEGCTKQP SITLSISTQR THEKSSRGEE LLQTLCSEID RLQDNSKCIL DEDDEDLIWE DLQSHGMNWK EIEGETPGLV LDIERLIFKD
901: LIGEVVTSEF AAFPRMLSGQ PRQLFHC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.