Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P07300_001 | Banana | cytosol | 37.79 | 36.2 |
| Solyc02g089030.1.1 | Tomato | nucleus | 2.53 | 30.99 |
| GSMUA_Achr7P26670_001 | Banana | nucleus | 22.93 | 28.72 |
| CDY42438 | Canola | nucleus | 27.77 | 25.61 |
| CDY49132 | Canola | nucleus | 26.38 | 24.92 |
| GSMUA_Achr4P32860_001 | Banana | nucleus | 28.0 | 24.87 |
| Bra008136.1-P | Field mustard | nucleus | 28.34 | 24.5 |
| CDX81888 | Canola | nucleus | 23.39 | 24.4 |
| CDX96710 | Canola | nucleus | 24.19 | 23.97 |
| CDY59655 | Canola | nucleus | 22.47 | 23.35 |
| Bra031037.1-P | Field mustard | nucleus | 22.47 | 23.35 |
| AT1G74160.1 | Thale cress | nucleus | 27.42 | 23.22 |
| VIT_17s0000g05210.t01 | Wine grape | cytosol | 29.38 | 23.2 |
| CDX83829 | Canola | cytosol | 21.77 | 23.02 |
| Solyc03g115000.2.1 | Tomato | nucleus | 28.8 | 22.89 |
| PGSC0003DMT400063076 | Potato | nucleus | 28.69 | 22.8 |
| VIT_14s0068g00360.t01 | Wine grape | nucleus | 25.69 | 22.78 |
| KRH63201 | Soybean | nucleus | 28.69 | 22.62 |
| TraesCS2B01G202300.1 | Wheat | nucleus | 24.54 | 22.42 |
| TraesCS2A01G176000.1 | Wheat | nucleus | 24.65 | 22.34 |
| HORVU2Hr1G032710.2 | Barley | cytosol | 24.42 | 22.2 |
| CDX85545 | Canola | nucleus | 20.51 | 22.17 |
| Os03t0418700-02 | Rice | nucleus | 23.62 | 22.14 |
| TraesCS2D01G183400.1 | Wheat | nucleus | 24.19 | 22.01 |
| KRH54713 | Soybean | nucleus | 27.77 | 21.83 |
| Bra023526.1-P | Field mustard | nucleus | 21.08 | 21.5 |
| CDX74270 | Canola | nucleus | 21.08 | 21.35 |
| KRH03155 | Soybean | nucleus | 25.81 | 21.33 |
| KRH56796 | Soybean | nucleus | 25.81 | 21.31 |
| Os07t0603300-01 | Rice | nucleus | 23.04 | 21.28 |
| Bra008689.1-P | Field mustard | nucleus | 21.89 | 21.21 |
| CDY43253 | Canola | nucleus | 20.28 | 21.15 |
| Bra001034.1-P | Field mustard | nucleus | 20.85 | 21.12 |
| CDX69516 | Canola | nucleus | 21.77 | 21.09 |
| KXG36646 | Sorghum | nucleus | 23.27 | 21.06 |
| Zm00001d006828_P001 | Maize | nucleus | 23.16 | 21.05 |
| KRH01314 | Soybean | nucleus | 23.5 | 20.94 |
| CDX90985 | Canola | nucleus | 20.51 | 20.87 |
| KRG93656 | Soybean | nucleus | 23.62 | 20.75 |
| PGSC0003DMT400003717 | Potato | nucleus | 22.58 | 20.74 |
| CDY26440 | Canola | nucleus | 21.31 | 20.72 |
| AT1G18620.2 | Thale cress | nucleus | 24.08 | 20.61 |
| Bra039160.1-P | Field mustard | nucleus | 19.47 | 20.61 |
| KRH45061 | Soybean | nucleus | 23.04 | 20.55 |
| KRH18379 | Soybean | nucleus | 23.27 | 20.51 |
| CDX91979 | Canola | nucleus | 20.05 | 20.35 |
| CDY60473 | Canola | nucleus | 19.24 | 20.22 |
| Zm00001d022072_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 22.12 | 20.19 |
| AT3G02170.1 | Thale cress | nucleus | 20.97 | 20.11 |
| AT5G15580.1 | Thale cress | nucleus | 20.97 | 19.63 |
| KXG39125 | Sorghum | plastid | 20.51 | 19.5 |
| Solyc02g089050.2.1 | Tomato | nucleus | 13.71 | 16.21 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P14410_001 | EnsemblPlants:GSMUA_Achr4T14410_001 | EnsemblPlantsGene:GSMUA_Achr4G14410_001 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016049 | GO:GO:0040007 | GO:GO:0051513 | InterPro:DUF4378 | InterPro:LNG1/2 |
| PANTHER:PTHR31680 | PFAM:PF14309 | SEG:seg | UniParc:UPI00029673F4 | UniProt:M0SNV6 | MapMan:13.4.1.2.2 |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G14410_001]
Coordinates
chr4:-:10765181..10769184
Molecular Weight (calculated)
96900.0 Da
IEP (calculated)
9.979
GRAVY (calculated)
-0.853
Length
868 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTKLLDASA DDKKLDLQKQ IGCISGIFRM FDRRHLLAGR SLSDRSHRKL PSGNNPLKTP ASFSSSSSSF SSLEYSKLSH QEACSFDKAF FTERSPRSSP
101: KQKNSDHVAK SIGFDLRSDI STSSTEEVKN HSVKQADSPM PLLFSKTRMP NDLNEAIRLL VELKEAPWKF RDHGARDASF PRINRASNLL QDPPSNQKRF
201: PTVVVKLMGL VDEAPDLSSA DQAITRKSCS SLHEPRDRNS TTRSKGARDA KGDPVQSRDS IVTKPKGHHS SLRHNSRIMT EAAPWKQRDR GHSPHKSRTG
301: YQEAQMKQRT EAIIKEVEER LKGDQLAQTT RDKDHPHKGS NQNLGSPKIS KRPAKAGGSP KAFDPPIVIM KPAKNVDISD ASGSANMTAD RVHSPRVRNI
401: QGILPTDKQF IGRTTESNSS PRFRSNSAGE SSGISTKTST VLSPRLQQRK REAEKSSPAT PDSMNKAQIH CNNRNPIESV SPRGKLRSKQ SQAREKKDQD
501: DEITCEKRVL SCVDDEISPG SYKNRSLALQ STVLQRRNQS SSSRASILNQ KNSALNMNQR IPEKELASIA FEQPCPVSVL DASCYQGEFS PSPVKRSSNS
601: VKDDAPCTSG QGCFRRSGLS DGQPLKWSDE TNPKKLEGVE NFVQLKVLNS TGEEPRTGDS ITSKCNLDNP DHGYVLEILL ATGFLSRQQA VPFQLHSSGH
701: AINPDLYGVL EKPKHGWFSE LEPIYRKADT EKKNRRKLVF DVVNEILSRQ MESYDYRNRP DLLLLQTGRK LNGQQLLEEV CSEITRLEAE NTRSASSGDD
801: VDFMFGEEVL DRSEGWVDYG MEQSKVALQM ERLIFKDLIN EVVSDATEAG LQHKPSKLRM QPFAKRMN
101: KQKNSDHVAK SIGFDLRSDI STSSTEEVKN HSVKQADSPM PLLFSKTRMP NDLNEAIRLL VELKEAPWKF RDHGARDASF PRINRASNLL QDPPSNQKRF
201: PTVVVKLMGL VDEAPDLSSA DQAITRKSCS SLHEPRDRNS TTRSKGARDA KGDPVQSRDS IVTKPKGHHS SLRHNSRIMT EAAPWKQRDR GHSPHKSRTG
301: YQEAQMKQRT EAIIKEVEER LKGDQLAQTT RDKDHPHKGS NQNLGSPKIS KRPAKAGGSP KAFDPPIVIM KPAKNVDISD ASGSANMTAD RVHSPRVRNI
401: QGILPTDKQF IGRTTESNSS PRFRSNSAGE SSGISTKTST VLSPRLQQRK REAEKSSPAT PDSMNKAQIH CNNRNPIESV SPRGKLRSKQ SQAREKKDQD
501: DEITCEKRVL SCVDDEISPG SYKNRSLALQ STVLQRRNQS SSSRASILNQ KNSALNMNQR IPEKELASIA FEQPCPVSVL DASCYQGEFS PSPVKRSSNS
601: VKDDAPCTSG QGCFRRSGLS DGQPLKWSDE TNPKKLEGVE NFVQLKVLNS TGEEPRTGDS ITSKCNLDNP DHGYVLEILL ATGFLSRQQA VPFQLHSSGH
701: AINPDLYGVL EKPKHGWFSE LEPIYRKADT EKKNRRKLVF DVVNEILSRQ MESYDYRNRP DLLLLQTGRK LNGQQLLEEV CSEITRLEAE NTRSASSGDD
801: VDFMFGEEVL DRSEGWVDYG MEQSKVALQM ERLIFKDLIN EVVSDATEAG LQHKPSKLRM QPFAKRMN
0001: MAAKLLHSLA DDSADLQKQI GCMNGIFQIF DRHHVLTGRR KSLTLGNGNA ININYERDSV DTIYQQKETF QDSNIGGNVK EKRRVSTESS RVSFSSSCSS
0101: SPSSSEFNRG VQPDASAYDR ANFQESPTSD PEMTEGNGFS HLGLDLRDVV RDSMYREARG LLSKTPMTRE EVVRQSRRED SPRPYGLKQS TPMDLNESFR
0201: VLARLRETSQ HYNELGMKDA PRYSVDSHDT LKSRQKLKEL PRLSLDSRER ATRNSSVDPK SSKLSESFSE SCSSSSKKRP PSVVAKLMGL ETLPGSPLGR
0301: DIHQFGLNKT NISDQNDDPF SRSLREKNLN RAIRFSPSSP RSLGKDPASP RWRNSDFVMK PLSNTRFPVE PAPWKHADRN RVLQKQASMP VKAKPYEAPN
0401: FPPTVYSEME RRLNDLEFKH SGKDLRALKQ ILESMQSKGF LDTEKQQQST NFAVQRDYER ENSATSNHAM SSRTRVQSSS SNQVYQSPIV IMKPAKLVEK
0501: AGIPASSLIP IHSLTGIKKI RREKPDDKGT SASNSKRVTK DCSPGNRRAE SCTSSFDKKS DSRNVRSSSK KPQQVSKESA SKSSGSVSPR LQQKKLEYDK
0601: RSRPPTPPDS SKSRKPSNQQ LVESTSPGGR RRPKGQKSLQ QVDDQLSQAS NESRTSSHGI CTQSETEASA CVEKSTEADG GKSPSVIEAA KAVVSNLMQN
0701: KSSPRFSEDG LSANLSLVAL EHPSPISVLD ASTYRETEPS PVKTQGNVAH DFGDENCEDQ WNPAYSFSET TSSFSPEINR KKLQNVEHLV QKLRRLNSSH
0801: DEASQDYIAS LCENADPTTD HRYISEILLA SGLLLRDLGS GLTTFQLHPS GHPINPELFF VLEQTKGSST THLLHKEESK VLKNEKLNRK LVFDLVNEIL
0901: VEKLASVEAT TNPLMKSYAK VTKKAVSAQQ LLKELCSAIE TQQKQATKRS ENFLLEEEDD FLKSILAEDV TIRSGNWADF SGEMSGLVLD VERLVFKDLV
1001: NEIVHAETSR LQAKSGRRRT LFADQ
0101: SPSSSEFNRG VQPDASAYDR ANFQESPTSD PEMTEGNGFS HLGLDLRDVV RDSMYREARG LLSKTPMTRE EVVRQSRRED SPRPYGLKQS TPMDLNESFR
0201: VLARLRETSQ HYNELGMKDA PRYSVDSHDT LKSRQKLKEL PRLSLDSRER ATRNSSVDPK SSKLSESFSE SCSSSSKKRP PSVVAKLMGL ETLPGSPLGR
0301: DIHQFGLNKT NISDQNDDPF SRSLREKNLN RAIRFSPSSP RSLGKDPASP RWRNSDFVMK PLSNTRFPVE PAPWKHADRN RVLQKQASMP VKAKPYEAPN
0401: FPPTVYSEME RRLNDLEFKH SGKDLRALKQ ILESMQSKGF LDTEKQQQST NFAVQRDYER ENSATSNHAM SSRTRVQSSS SNQVYQSPIV IMKPAKLVEK
0501: AGIPASSLIP IHSLTGIKKI RREKPDDKGT SASNSKRVTK DCSPGNRRAE SCTSSFDKKS DSRNVRSSSK KPQQVSKESA SKSSGSVSPR LQQKKLEYDK
0601: RSRPPTPPDS SKSRKPSNQQ LVESTSPGGR RRPKGQKSLQ QVDDQLSQAS NESRTSSHGI CTQSETEASA CVEKSTEADG GKSPSVIEAA KAVVSNLMQN
0701: KSSPRFSEDG LSANLSLVAL EHPSPISVLD ASTYRETEPS PVKTQGNVAH DFGDENCEDQ WNPAYSFSET TSSFSPEINR KKLQNVEHLV QKLRRLNSSH
0801: DEASQDYIAS LCENADPTTD HRYISEILLA SGLLLRDLGS GLTTFQLHPS GHPINPELFF VLEQTKGSST THLLHKEESK VLKNEKLNRK LVFDLVNEIL
0901: VEKLASVEAT TNPLMKSYAK VTKKAVSAQQ LLKELCSAIE TQQKQATKRS ENFLLEEEDD FLKSILAEDV TIRSGNWADF SGEMSGLVLD VERLVFKDLV
1001: NEIVHAETSR LQAKSGRRRT LFADQ
Arabidopsis Description
LONGIFOLIA protein [Source:UniProtKB/TrEMBL;Acc:Q0WNQ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.