Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g089030.1.1 | Tomato | nucleus | 7.3 | 97.18 |
| Solyc02g089050.2.1 | Tomato | nucleus | 62.96 | 81.06 |
| VIT_14s0068g00360.t01 | Wine grape | nucleus | 33.97 | 32.79 |
| KRH01314 | Soybean | nucleus | 31.64 | 30.7 |
| Bra039160.1-P | Field mustard | nucleus | 26.45 | 30.49 |
| KRH45061 | Soybean | nucleus | 31.32 | 30.42 |
| CDY60473 | Canola | nucleus | 26.35 | 30.15 |
| CDY43253 | Canola | nucleus | 26.35 | 29.93 |
| KRH18379 | Soybean | nucleus | 30.9 | 29.64 |
| CDX85545 | Canola | nucleus | 25.19 | 29.64 |
| CDX91979 | Canola | nucleus | 26.56 | 29.36 |
| CDX74270 | Canola | nucleus | 26.56 | 29.29 |
| Bra001034.1-P | Field mustard | nucleus | 26.45 | 29.17 |
| PGSC0003DMT400063076 | Potato | nucleus | 33.65 | 29.12 |
| KRG93656 | Soybean | nucleus | 29.95 | 28.64 |
| AT3G02170.1 | Thale cress | nucleus | 26.77 | 27.96 |
| CDX69516 | Canola | nucleus | 26.45 | 27.9 |
| Bra008689.1-P | Field mustard | nucleus | 26.45 | 27.9 |
| Bra023526.1-P | Field mustard | nucleus | 24.97 | 27.73 |
| GSMUA_Achr4P32860_001 | Banana | nucleus | 28.47 | 27.53 |
| CDX90985 | Canola | nucleus | 24.76 | 27.43 |
| CDY26440 | Canola | nucleus | 25.61 | 27.1 |
| AT5G15580.1 | Thale cress | nucleus | 26.35 | 26.86 |
| Os07t0603300-01 | Rice | nucleus | 24.44 | 24.57 |
| Os03t0418700-02 | Rice | nucleus | 24.02 | 24.51 |
| GSMUA_Achr4P07300_001 | Banana | cytosol | 23.39 | 24.39 |
| TraesCS2D01G183400.1 | Wheat | nucleus | 24.44 | 24.21 |
| TraesCS2A01G176000.1 | Wheat | nucleus | 24.44 | 24.11 |
| TraesCS2B01G281200.2 | Wheat | cytosol | 27.2 | 24.11 |
| TraesCS2B01G202300.1 | Wheat | nucleus | 24.13 | 24.0 |
| KXG36646 | Sorghum | nucleus | 24.34 | 23.98 |
| HORVU2Hr1G032710.2 | Barley | cytosol | 24.13 | 23.87 |
| TraesCS2D01G262900.1 | Wheat | cytosol | 27.09 | 23.79 |
| TraesCS2A01G261000.1 | Wheat | cytosol | 26.88 | 23.67 |
| Zm00001d006828_P001 | Maize | nucleus | 23.92 | 23.66 |
| HORVU2Hr1G063820.1 | Barley | cytosol | 26.88 | 23.65 |
| Zm00001d022072_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 23.39 | 23.24 |
| EER98557 | Sorghum | nucleus | 26.35 | 22.97 |
| Os07t0109400-01 | Rice | nucleus | 26.35 | 22.86 |
| GSMUA_Achr7P26670_001 | Banana | nucleus | 16.72 | 22.8 |
| GSMUA_Achr4P14410_001 | Banana | nucleus | 20.74 | 22.58 |
| Zm00001d019700_P006 | Maize | nucleus | 25.29 | 22.44 |
| Zm00001d005297_P006 | Maize | nucleus | 25.93 | 22.27 |
| KXG39125 | Sorghum | plastid | 21.06 | 21.8 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400003717 | EnsemblPlantsGene:PGSC0003DMG400001462 | EntrezGene:102579668 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016049 | GO:GO:0040007 | GO:GO:0051513 | InterPro:DUF4378 | InterPro:LNG1/2 |
| ncoils:Coil | PANTHER:PTHR31680 | PANTHER:PTHR31680:SF4 | PFAM:PF14309 | PGSC:PGSC0003DMG400001462 | RefSeq:XP_015162157.1 |
| SEG:seg | UniParc:UPI000295A84C | UniProt:M0ZM73 | MapMan:13.4.1.2.2 | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400001462]
Coordinates
chr2:+:45504383..45509679
Molecular Weight (calculated)
107233.0 Da
IEP (calculated)
9.914
GRAVY (calculated)
-0.925
Length
945 amino acids
Sequence
(BLAST)
(BLAST)
001: MSARMLSSIT EDNKDLHKKI GCMNGLFQLF DRHHFLIGKH LHGQNHKRLL TGAMDKMETK CTMQLATEKT PRDVARNKVS HSSESSKANP KVEQSKRPQQ
101: EQPLCGQRNL SESPSKTLPY KQPSSPSHSG RQSPDFRDVV KDSMHREARS LSVKTVTKVE GKVHVMKHID SPRPFQQSNC GKPSDGTRNL TAKFREAPRN
201: SKDDLKHAPR DHPRFSYDER DSREAMRSSI RLKDLPRLSL DSREQSFRSS ASESRSNFLL GDHKRSSSVV AKLMGLEALP NPIPSNEVET VIPKSFSTKD
301: SVSVSTKTAE KSKNNQVTRF SQINEKDFGS PRMKSTNLIM RAASTSRLPL EPAPWRQPEA SRTSLKSSAR NTDVELSIQS PKLSFSVYGE MEKRITELEF
401: RKSGKDLRAL KQILEAMQKT RARLDVQTEE QADSDANLEI VQKRQQCNLL SPTIKGTRPP KREDTADKKT WKDVTPRAKN IRESGWLLPS PDRKIKEGTS
501: RAVQNPTLRQ QKEGSYPAIG RNSGTVSPRP LQKKKQSCPT TTSPEFSRVR RQSIKQSKES GSSKRRLQAK PNNLLRVDEE LSEISSSTRN FSEQSDAASL
601: QSESNNSWSS HAEGEVTSRN HSFRVNAKRL EDSKDKSNIL RLTEDRPMAE LAISTIEQPS PVSVLDATFY EEDSPSPVKK KTTAFRVEDA ADELWYLDYQ
701: DRSPYNTRMD LGTEATTQKK LERIKDLVNQ LRLLDSSYEV STDQFGSLSQ NHNPDHRYIT KILLASGLLK DVDSVSMAIQ LQSSGHLIDQ KLFHILEQTE
801: EHVMPANGHS KTSARIEFNQ KMHRKNVFDT VDEILSCKLA SESCLLQGRD HLSAQQLQKE LQSDIDQLNA KKVGMDSEED DLISILNADL RRQSEDWTNG
901: DSEIPSLILD VERLIYKDLI TEIISDEARE QQIRTRRHCR QLFTN
101: EQPLCGQRNL SESPSKTLPY KQPSSPSHSG RQSPDFRDVV KDSMHREARS LSVKTVTKVE GKVHVMKHID SPRPFQQSNC GKPSDGTRNL TAKFREAPRN
201: SKDDLKHAPR DHPRFSYDER DSREAMRSSI RLKDLPRLSL DSREQSFRSS ASESRSNFLL GDHKRSSSVV AKLMGLEALP NPIPSNEVET VIPKSFSTKD
301: SVSVSTKTAE KSKNNQVTRF SQINEKDFGS PRMKSTNLIM RAASTSRLPL EPAPWRQPEA SRTSLKSSAR NTDVELSIQS PKLSFSVYGE MEKRITELEF
401: RKSGKDLRAL KQILEAMQKT RARLDVQTEE QADSDANLEI VQKRQQCNLL SPTIKGTRPP KREDTADKKT WKDVTPRAKN IRESGWLLPS PDRKIKEGTS
501: RAVQNPTLRQ QKEGSYPAIG RNSGTVSPRP LQKKKQSCPT TTSPEFSRVR RQSIKQSKES GSSKRRLQAK PNNLLRVDEE LSEISSSTRN FSEQSDAASL
601: QSESNNSWSS HAEGEVTSRN HSFRVNAKRL EDSKDKSNIL RLTEDRPMAE LAISTIEQPS PVSVLDATFY EEDSPSPVKK KTTAFRVEDA ADELWYLDYQ
701: DRSPYNTRMD LGTEATTQKK LERIKDLVNQ LRLLDSSYEV STDQFGSLSQ NHNPDHRYIT KILLASGLLK DVDSVSMAIQ LQSSGHLIDQ KLFHILEQTE
801: EHVMPANGHS KTSARIEFNQ KMHRKNVFDT VDEILSCKLA SESCLLQGRD HLSAQQLQKE LQSDIDQLNA KKVGMDSEED DLISILNADL RRQSEDWTNG
901: DSEIPSLILD VERLIYKDLI TEIISDEARE QQIRTRRHCR QLFTN
0001: MAAKLLHSLA DDSADLQKQI GCMNGIFQIF DRHHVLTGRR KSLTLGNGNA ININYERDSV DTIYQQKETF QDSNIGGNVK EKRRVSTESS RVSFSSSCSS
0101: SPSSSEFNRG VQPDASAYDR ANFQESPTSD PEMTEGNGFS HLGLDLRDVV RDSMYREARG LLSKTPMTRE EVVRQSRRED SPRPYGLKQS TPMDLNESFR
0201: VLARLRETSQ HYNELGMKDA PRYSVDSHDT LKSRQKLKEL PRLSLDSRER ATRNSSVDPK SSKLSESFSE SCSSSSKKRP PSVVAKLMGL ETLPGSPLGR
0301: DIHQFGLNKT NISDQNDDPF SRSLREKNLN RAIRFSPSSP RSLGKDPASP RWRNSDFVMK PLSNTRFPVE PAPWKHADRN RVLQKQASMP VKAKPYEAPN
0401: FPPTVYSEME RRLNDLEFKH SGKDLRALKQ ILESMQSKGF LDTEKQQQST NFAVQRDYER ENSATSNHAM SSRTRVQSSS SNQVYQSPIV IMKPAKLVEK
0501: AGIPASSLIP IHSLTGIKKI RREKPDDKGT SASNSKRVTK DCSPGNRRAE SCTSSFDKKS DSRNVRSSSK KPQQVSKESA SKSSGSVSPR LQQKKLEYDK
0601: RSRPPTPPDS SKSRKPSNQQ LVESTSPGGR RRPKGQKSLQ QVDDQLSQAS NESRTSSHGI CTQSETEASA CVEKSTEADG GKSPSVIEAA KAVVSNLMQN
0701: KSSPRFSEDG LSANLSLVAL EHPSPISVLD ASTYRETEPS PVKTQGNVAH DFGDENCEDQ WNPAYSFSET TSSFSPEINR KKLQNVEHLV QKLRRLNSSH
0801: DEASQDYIAS LCENADPTTD HRYISEILLA SGLLLRDLGS GLTTFQLHPS GHPINPELFF VLEQTKGSST THLLHKEESK VLKNEKLNRK LVFDLVNEIL
0901: VEKLASVEAT TNPLMKSYAK VTKKAVSAQQ LLKELCSAIE TQQKQATKRS ENFLLEEEDD FLKSILAEDV TIRSGNWADF SGEMSGLVLD VERLVFKDLV
1001: NEIVHAETSR LQAKSGRRRT LFADQ
0101: SPSSSEFNRG VQPDASAYDR ANFQESPTSD PEMTEGNGFS HLGLDLRDVV RDSMYREARG LLSKTPMTRE EVVRQSRRED SPRPYGLKQS TPMDLNESFR
0201: VLARLRETSQ HYNELGMKDA PRYSVDSHDT LKSRQKLKEL PRLSLDSRER ATRNSSVDPK SSKLSESFSE SCSSSSKKRP PSVVAKLMGL ETLPGSPLGR
0301: DIHQFGLNKT NISDQNDDPF SRSLREKNLN RAIRFSPSSP RSLGKDPASP RWRNSDFVMK PLSNTRFPVE PAPWKHADRN RVLQKQASMP VKAKPYEAPN
0401: FPPTVYSEME RRLNDLEFKH SGKDLRALKQ ILESMQSKGF LDTEKQQQST NFAVQRDYER ENSATSNHAM SSRTRVQSSS SNQVYQSPIV IMKPAKLVEK
0501: AGIPASSLIP IHSLTGIKKI RREKPDDKGT SASNSKRVTK DCSPGNRRAE SCTSSFDKKS DSRNVRSSSK KPQQVSKESA SKSSGSVSPR LQQKKLEYDK
0601: RSRPPTPPDS SKSRKPSNQQ LVESTSPGGR RRPKGQKSLQ QVDDQLSQAS NESRTSSHGI CTQSETEASA CVEKSTEADG GKSPSVIEAA KAVVSNLMQN
0701: KSSPRFSEDG LSANLSLVAL EHPSPISVLD ASTYRETEPS PVKTQGNVAH DFGDENCEDQ WNPAYSFSET TSSFSPEINR KKLQNVEHLV QKLRRLNSSH
0801: DEASQDYIAS LCENADPTTD HRYISEILLA SGLLLRDLGS GLTTFQLHPS GHPINPELFF VLEQTKGSST THLLHKEESK VLKNEKLNRK LVFDLVNEIL
0901: VEKLASVEAT TNPLMKSYAK VTKKAVSAQQ LLKELCSAIE TQQKQATKRS ENFLLEEEDD FLKSILAEDV TIRSGNWADF SGEMSGLVLD VERLVFKDLV
1001: NEIVHAETSR LQAKSGRRRT LFADQ
Arabidopsis Description
LONGIFOLIA protein [Source:UniProtKB/TrEMBL;Acc:Q0WNQ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.