Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g115000.2.1 | Tomato | nucleus | 95.05 | 95.05 |
| VIT_17s0000g05210.t01 | Wine grape | cytosol | 54.4 | 54.05 |
| KRH63201 | Soybean | nucleus | 50.64 | 50.23 |
| KRH54713 | Soybean | nucleus | 50.09 | 49.55 |
| CDY42438 | Canola | nucleus | 40.48 | 46.97 |
| CDY49132 | Canola | nucleus | 39.38 | 46.79 |
| KRH56796 | Soybean | nucleus | 43.31 | 45.0 |
| Bra008136.1-P | Field mustard | nucleus | 41.12 | 44.72 |
| KRH03155 | Soybean | nucleus | 42.95 | 44.67 |
| AT1G74160.1 | Thale cress | nucleus | 41.3 | 44.0 |
| CDX81888 | Canola | nucleus | 32.23 | 42.31 |
| Bra031037.1-P | Field mustard | nucleus | 32.33 | 42.28 |
| CDY59655 | Canola | nucleus | 32.33 | 42.28 |
| CDX83829 | Canola | cytosol | 30.68 | 40.8 |
| CDX96710 | Canola | nucleus | 32.33 | 40.3 |
| AT1G18620.2 | Thale cress | nucleus | 36.45 | 39.25 |
| GSMUA_Achr4P32860_001 | Banana | nucleus | 33.7 | 37.67 |
| TraesCS2B01G281200.2 | Wheat | cytosol | 33.06 | 33.86 |
| PGSC0003DMT400003717 | Potato | nucleus | 29.12 | 33.65 |
| HORVU2Hr1G063820.1 | Barley | cytosol | 32.88 | 33.43 |
| TraesCS2D01G262900.1 | Wheat | cytosol | 32.78 | 33.27 |
| TraesCS2A01G261000.1 | Wheat | cytosol | 32.69 | 33.27 |
| EER98557 | Sorghum | nucleus | 32.51 | 32.75 |
| Os07t0109400-01 | Rice | nucleus | 31.96 | 32.05 |
| Zm00001d019700_P006 | Maize | nucleus | 31.04 | 31.83 |
| Zm00001d005297_P006 | Maize | nucleus | 31.59 | 31.36 |
| GSMUA_Achr4P07300_001 | Banana | cytosol | 25.82 | 31.13 |
| Os07t0603300-01 | Rice | nucleus | 25.92 | 30.11 |
| TraesCS2D01G183400.1 | Wheat | nucleus | 25.92 | 29.66 |
| HORVU2Hr1G032710.2 | Barley | cytosol | 25.73 | 29.42 |
| TraesCS2A01G176000.1 | Wheat | nucleus | 25.73 | 29.33 |
| TraesCS2B01G202300.1 | Wheat | nucleus | 25.46 | 29.26 |
| GSMUA_Achr7P26670_001 | Banana | nucleus | 18.5 | 29.15 |
| GSMUA_Achr4P14410_001 | Banana | nucleus | 22.8 | 28.69 |
| Os03t0418700-02 | Rice | nucleus | 24.18 | 28.51 |
| Zm00001d006828_P001 | Maize | nucleus | 24.73 | 28.27 |
| KXG36646 | Sorghum | nucleus | 24.82 | 28.26 |
| Zm00001d022072_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 23.9 | 27.44 |
| KXG39125 | Sorghum | plastid | 20.88 | 24.97 |
Protein Annotations
| EntrezGene:102587798 | MapMan:13.4.1.2.2 | ncoils:Coil | InterPro:DUF3741-assoc | InterPro:DUF4378 | GO:GO:0008150 |
| GO:GO:0009653 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0040007 | GO:GO:0051513 |
| InterPro:LNG1/2 | UniProt:M1CA11 | PFAM:PF14309 | PFAM:PF14383 | EnsemblPlantsGene:PGSC0003DMG400024535 | PGSC:PGSC0003DMG400024535 |
| EnsemblPlants:PGSC0003DMT400063076 | PANTHER:PTHR31680 | PANTHER:PTHR31680:SF3 | UniParc:UPI000295CC8E | RefSeq:XP_006345115.1 | SEG:seg |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400024535]
Coordinates
chr3:+:54980279..54986682
Molecular Weight (calculated)
122145.0 Da
IEP (calculated)
9.787
GRAVY (calculated)
-0.837
Length
1092 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAKLLHSLT EDNQDLQKQI GCMTGILHIF DRQSMLASRR LIGNSPRRLT SGSSHIGSGA SEKEYTSTYQ RSPAMESHTN KTVQDKQRLS TESSRPSFSS
0101: SSRSSSFSSL DCNKTSQQEP LAFDRLSFAE TPSREPATGQ PNASPQFGRQ SLDIRDVVKD SMNREAQRFS AGPAVKEEVT ESMSKPGDSP RPVQTLKNFD
0201: GAYDSGPNGK QNLSVDLKES LRVLAKLREA PWYSSEHREL TRSLSYHSKD TSTLSVSKDA PRFSYDGRET NHVPFEQRDI SKSTLKLKEL PRLSLDSRVS
0301: PVRSLNSEPK SNFSSKSMQK DSGNTNAKSP TMQQTSGIPA RPPSVVAKLM GLDTLPGAMS STDSKMGLST SSQVEEPVSF PRSSEVSDPY KPIRTSNTSK
0401: NLWKEPTSPK WRNPDMAMKP ISRFPIEPAP WKQPDRTRVY EKPISRTTKT PVKPAHPFPS VYSEIEKRWK DLEFTHSGKD LRALKQILEA MQAKGLLETE
0501: KEEQDSNFTG QKEHHQKIAS PAQSAKLANQ RMRQTDQVTA PTKRGINSSR NFESPIVIMK PAKLMEKSDI PSSSMIPLHG GDSVSRKGNA MSRAAKEHQP
0601: RTSYGSSPVN PNETRRTSKP PQISTRSQQL PKEIISGSIK SSGSISPRLQ QNKLELEKRS RPPTPPSDSN RSRRQSNKQH TEASSPGGRR RPRISNIQQH
0701: DEHVSEISSE SRNLSCHGNK ISGQSKGNVV AESKVDFEVT SFERSLEMTS SPSSSIDASN YLRCDLVEKK SIRVFSEDEM LTEPAPEYPS PVSVLDNAVY
0801: MDESPSPVKH TPKVMKDENC NTADKFSSLP QCDRSNTLVI DATSSGLSSE INRKKLQNIE NLVEKLRRLN SNHDEARTDY IASLCENTNP DHRYISEILL
0901: ASGLLLRDLG TSLTSFQFHP SGHPINPELF LVLEQTKAST LLKEEFCNDK MRQSNPKEKI RRKLIFDVVN ESLAGKLVLV GPSYEPWLMS QKLAKSTLNA
1001: QRLLRDLCSE IEQLQAKPSK CNMEDEEDEW KNILLDDVVH RSESWTVFTG EISSVVLDVE RMIFKDLVDE IVRGDGSGLR AKPTRRRQLF AK
0101: SSRSSSFSSL DCNKTSQQEP LAFDRLSFAE TPSREPATGQ PNASPQFGRQ SLDIRDVVKD SMNREAQRFS AGPAVKEEVT ESMSKPGDSP RPVQTLKNFD
0201: GAYDSGPNGK QNLSVDLKES LRVLAKLREA PWYSSEHREL TRSLSYHSKD TSTLSVSKDA PRFSYDGRET NHVPFEQRDI SKSTLKLKEL PRLSLDSRVS
0301: PVRSLNSEPK SNFSSKSMQK DSGNTNAKSP TMQQTSGIPA RPPSVVAKLM GLDTLPGAMS STDSKMGLST SSQVEEPVSF PRSSEVSDPY KPIRTSNTSK
0401: NLWKEPTSPK WRNPDMAMKP ISRFPIEPAP WKQPDRTRVY EKPISRTTKT PVKPAHPFPS VYSEIEKRWK DLEFTHSGKD LRALKQILEA MQAKGLLETE
0501: KEEQDSNFTG QKEHHQKIAS PAQSAKLANQ RMRQTDQVTA PTKRGINSSR NFESPIVIMK PAKLMEKSDI PSSSMIPLHG GDSVSRKGNA MSRAAKEHQP
0601: RTSYGSSPVN PNETRRTSKP PQISTRSQQL PKEIISGSIK SSGSISPRLQ QNKLELEKRS RPPTPPSDSN RSRRQSNKQH TEASSPGGRR RPRISNIQQH
0701: DEHVSEISSE SRNLSCHGNK ISGQSKGNVV AESKVDFEVT SFERSLEMTS SPSSSIDASN YLRCDLVEKK SIRVFSEDEM LTEPAPEYPS PVSVLDNAVY
0801: MDESPSPVKH TPKVMKDENC NTADKFSSLP QCDRSNTLVI DATSSGLSSE INRKKLQNIE NLVEKLRRLN SNHDEARTDY IASLCENTNP DHRYISEILL
0901: ASGLLLRDLG TSLTSFQFHP SGHPINPELF LVLEQTKAST LLKEEFCNDK MRQSNPKEKI RRKLIFDVVN ESLAGKLVLV GPSYEPWLMS QKLAKSTLNA
1001: QRLLRDLCSE IEQLQAKPSK CNMEDEEDEW KNILLDDVVH RSESWTVFTG EISSVVLDVE RMIFKDLVDE IVRGDGSGLR AKPTRRRQLF AK
0001: MAAKLLHSLA DDSADLQKQI GCMNGIFQIF DRHHVLTGRR KSLTLGNGNA ININYERDSV DTIYQQKETF QDSNIGGNVK EKRRVSTESS RVSFSSSCSS
0101: SPSSSEFNRG VQPDASAYDR ANFQESPTSD PEMTEGNGFS HLGLDLRDVV RDSMYREARG LLSKTPMTRE EVVRQSRRED SPRPYGLKQS TPMDLNESFR
0201: VLARLRETSQ HYNELGMKDA PRYSVDSHDT LKSRQKLKEL PRLSLDSRER ATRNSSVDPK SSKLSESFSE SCSSSSKKRP PSVVAKLMGL ETLPGSPLGR
0301: DIHQFGLNKT NISDQNDDPF SRSLREKNLN RAIRFSPSSP RSLGKDPASP RWRNSDFVMK PLSNTRFPVE PAPWKHADRN RVLQKQASMP VKAKPYEAPN
0401: FPPTVYSEME RRLNDLEFKH SGKDLRALKQ ILESMQSKGF LDTEKQQQST NFAVQRDYER ENSATSNHAM SSRTRVQSSS SNQVYQSPIV IMKPAKLVEK
0501: AGIPASSLIP IHSLTGIKKI RREKPDDKGT SASNSKRVTK DCSPGNRRAE SCTSSFDKKS DSRNVRSSSK KPQQVSKESA SKSSGSVSPR LQQKKLEYDK
0601: RSRPPTPPDS SKSRKPSNQQ LVESTSPGGR RRPKGQKSLQ QVDDQLSQAS NESRTSSHGI CTQSETEASA CVEKSTEADG GKSPSVIEAA KAVVSNLMQN
0701: KSSPRFSEDG LSANLSLVAL EHPSPISVLD ASTYRETEPS PVKTQGNVAH DFGDENCEDQ WNPAYSFSET TSSFSPEINR KKLQNVEHLV QKLRRLNSSH
0801: DEASQDYIAS LCENADPTTD HRYISEILLA SGLLLRDLGS GLTTFQLHPS GHPINPELFF VLEQTKGSST THLLHKEESK VLKNEKLNRK LVFDLVNEIL
0901: VEKLASVEAT TNPLMKSYAK VTKKAVSAQQ LLKELCSAIE TQQKQATKRS ENFLLEEEDD FLKSILAEDV TIRSGNWADF SGEMSGLVLD VERLVFKDLV
1001: NEIVHAETSR LQAKSGRRRT LFADQ
0101: SPSSSEFNRG VQPDASAYDR ANFQESPTSD PEMTEGNGFS HLGLDLRDVV RDSMYREARG LLSKTPMTRE EVVRQSRRED SPRPYGLKQS TPMDLNESFR
0201: VLARLRETSQ HYNELGMKDA PRYSVDSHDT LKSRQKLKEL PRLSLDSRER ATRNSSVDPK SSKLSESFSE SCSSSSKKRP PSVVAKLMGL ETLPGSPLGR
0301: DIHQFGLNKT NISDQNDDPF SRSLREKNLN RAIRFSPSSP RSLGKDPASP RWRNSDFVMK PLSNTRFPVE PAPWKHADRN RVLQKQASMP VKAKPYEAPN
0401: FPPTVYSEME RRLNDLEFKH SGKDLRALKQ ILESMQSKGF LDTEKQQQST NFAVQRDYER ENSATSNHAM SSRTRVQSSS SNQVYQSPIV IMKPAKLVEK
0501: AGIPASSLIP IHSLTGIKKI RREKPDDKGT SASNSKRVTK DCSPGNRRAE SCTSSFDKKS DSRNVRSSSK KPQQVSKESA SKSSGSVSPR LQQKKLEYDK
0601: RSRPPTPPDS SKSRKPSNQQ LVESTSPGGR RRPKGQKSLQ QVDDQLSQAS NESRTSSHGI CTQSETEASA CVEKSTEADG GKSPSVIEAA KAVVSNLMQN
0701: KSSPRFSEDG LSANLSLVAL EHPSPISVLD ASTYRETEPS PVKTQGNVAH DFGDENCEDQ WNPAYSFSET TSSFSPEINR KKLQNVEHLV QKLRRLNSSH
0801: DEASQDYIAS LCENADPTTD HRYISEILLA SGLLLRDLGS GLTTFQLHPS GHPINPELFF VLEQTKGSST THLLHKEESK VLKNEKLNRK LVFDLVNEIL
0901: VEKLASVEAT TNPLMKSYAK VTKKAVSAQQ LLKELCSAIE TQQKQATKRS ENFLLEEEDD FLKSILAEDV TIRSGNWADF SGEMSGLVLD VERLVFKDLV
1001: NEIVHAETSR LQAKSGRRRT LFADQ
Arabidopsis Description
LONGIFOLIA protein [Source:UniProtKB/TrEMBL;Acc:Q0WNQ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.