Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96710 | Canola | nucleus | 83.56 | 78.31 |
| CDY59655 | Canola | nucleus | 60.29 | 59.28 |
| CDX81888 | Canola | nucleus | 55.91 | 55.17 |
| AT1G18620.2 | Thale cress | nucleus | 60.41 | 48.92 |
| CDY42438 | Canola | nucleus | 51.52 | 44.95 |
| CDY49132 | Canola | nucleus | 50.06 | 44.72 |
| KRH63201 | Soybean | nucleus | 45.07 | 33.61 |
| VIT_17s0000g05210.t01 | Wine grape | cytosol | 44.09 | 32.94 |
| KRH54713 | Soybean | nucleus | 44.09 | 32.79 |
| KRH03155 | Soybean | nucleus | 41.17 | 32.19 |
| KRH56796 | Soybean | nucleus | 41.17 | 32.16 |
| Solyc03g115000.2.1 | Tomato | nucleus | 41.17 | 30.95 |
| PGSC0003DMT400063076 | Potato | nucleus | 40.8 | 30.68 |
| GSMUA_Achr4P32860_001 | Banana | nucleus | 32.4 | 27.23 |
| CDY60473 | Canola | nucleus | 26.92 | 26.76 |
| CDX91979 | Canola | nucleus | 27.28 | 26.2 |
| CDX85545 | Canola | nucleus | 25.58 | 26.15 |
| CDX69516 | Canola | nucleus | 28.01 | 25.67 |
| CDY43253 | Canola | nucleus | 25.82 | 25.48 |
| KXG36646 | Sorghum | nucleus | 29.6 | 25.34 |
| CDX74270 | Canola | nucleus | 26.43 | 25.32 |
| Zm00001d006828_P001 | Maize | nucleus | 28.99 | 24.92 |
| CDY26440 | Canola | nucleus | 27.04 | 24.86 |
| CDX90985 | Canola | nucleus | 25.82 | 24.85 |
| Zm00001d022072_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 28.62 | 24.71 |
| TraesCS2D01G183400.1 | Wheat | nucleus | 28.62 | 24.63 |
| Os07t0603300-01 | Rice | nucleus | 28.14 | 24.57 |
| Os03t0418700-02 | Rice | nucleus | 27.65 | 24.51 |
| GSMUA_Achr7P26670_001 | Banana | nucleus | 20.58 | 24.39 |
| TraesCS2B01G281200.2 | Wheat | cytosol | 31.55 | 24.3 |
| HORVU2Hr1G032710.2 | Barley | cytosol | 28.26 | 24.29 |
| TraesCS2D01G262900.1 | Wheat | cytosol | 31.79 | 24.26 |
| TraesCS2A01G176000.1 | Wheat | nucleus | 28.26 | 24.22 |
| HORVU2Hr1G063820.1 | Barley | cytosol | 31.55 | 24.12 |
| TraesCS2B01G202300.1 | Wheat | nucleus | 27.89 | 24.11 |
| TraesCS2A01G261000.1 | Wheat | cytosol | 31.43 | 24.04 |
| GSMUA_Achr4P07300_001 | Banana | cytosol | 26.43 | 23.95 |
| Zm00001d019700_P006 | Maize | nucleus | 30.57 | 23.57 |
| EER98557 | Sorghum | nucleus | 30.69 | 23.25 |
| Zm00001d005297_P006 | Maize | nucleus | 30.94 | 23.09 |
| Os07t0109400-01 | Rice | nucleus | 30.57 | 23.05 |
| GSMUA_Achr4P14410_001 | Banana | nucleus | 23.02 | 21.77 |
| KXG39125 | Sorghum | plastid | 23.26 | 20.92 |
Protein Annotations
| EnsemblPlants:CDX83829 | EnsemblPlantsGene:GSBRNA2T00139586001 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016049 | GO:GO:0040007 | GO:GO:0051513 | InterPro:DUF3741-assoc | InterPro:DUF4378 | InterPro:LNG1/2 |
| ncoils:Coil | PANTHER:PTHR31680 | PANTHER:PTHR31680:SF3 | PFAM:PF14309 | PFAM:PF14383 | ProteinID:CDX83829 |
| ProteinID:CDX83829.1 | SEG:seg | UniParc:UPI0004EDD1EB | MapMan:13.4.1.2.2 | : | : |
Description
BnaC08g18160D
Coordinates
chrLK031834:-:674830..678330
Molecular Weight (calculated)
92485.9 Da
IEP (calculated)
10.098
GRAVY (calculated)
-0.791
Length
821 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAKLLHTLA DENSDLQKKI GCMNGIFQLF DRHNHVRKSL ALGNAHVNSI NFERDSSFQF QDTNIINATS EKLTESSRVS FSSSCSSSSL LSSELNREET
101: QPEISPYDRV IFPESPTSDP VMSRGKGFAA HMGLDLRDVV RDSMYREVKA LSEVCRHKRR EEDSPRPYGL KHSTPVDFNE SCKALAKLRT TSQRCYNEVD
201: MKDASHNKFK SGKKVKESPK LSLDSRDHVD LKAGDSKLSR SSTMNKRPPS VVAKLMGLET LPGSPLGSPR SLRKDTASSS SSPRWRSSEF VMKPLSSLRF
301: PTEPAPWKQT DRRSLTKHKQ ACKPLSQPME KRLKGVEINH PKKDLRALNE ILEAMQTKSV FGSRKQPQCS NSRGLKNQVM PSTMRGPIVI IKPARLVERS
401: GIPSSSLVPI HSLSVLNREK KESVHVKRNS TSKKAAKDGS ISSVDSKSSS RNVRSSQLSK ESTSPRLRQM KKHEHEKRSR PPTTPSDSSK SRKQTNRQPG
501: ESTTNNPGGR SRPRAQRILQ KTEATMIIKQ ATEAGDGKSP TVIEAAKTVV SNLMQTVSDE HCEEEEQWNP AYSFSETTTT TTLSPEINRK KLQNVEHLVQ
601: KLKRLNSSHD ETSQDYIASL CENNDPNTDH RYISEILLAS GLLLRDLSSE LTTFQLHPSG HPINPELFLV LEQTKGRSSG YEKLNRKLVF DAVNETLVKK
701: LAIKDPWMKR KVLSAQQLLK EVCSEIETVK KKAEKRSGNL LLLEEQEEDF LKCILDEDVR TRSEKWTDFD DVVPGLVLDI ERLLFKDLVN EVVHVKLELK
801: DVEVSDASRD YHHPQRNSKG V
101: QPEISPYDRV IFPESPTSDP VMSRGKGFAA HMGLDLRDVV RDSMYREVKA LSEVCRHKRR EEDSPRPYGL KHSTPVDFNE SCKALAKLRT TSQRCYNEVD
201: MKDASHNKFK SGKKVKESPK LSLDSRDHVD LKAGDSKLSR SSTMNKRPPS VVAKLMGLET LPGSPLGSPR SLRKDTASSS SSPRWRSSEF VMKPLSSLRF
301: PTEPAPWKQT DRRSLTKHKQ ACKPLSQPME KRLKGVEINH PKKDLRALNE ILEAMQTKSV FGSRKQPQCS NSRGLKNQVM PSTMRGPIVI IKPARLVERS
401: GIPSSSLVPI HSLSVLNREK KESVHVKRNS TSKKAAKDGS ISSVDSKSSS RNVRSSQLSK ESTSPRLRQM KKHEHEKRSR PPTTPSDSSK SRKQTNRQPG
501: ESTTNNPGGR SRPRAQRILQ KTEATMIIKQ ATEAGDGKSP TVIEAAKTVV SNLMQTVSDE HCEEEEQWNP AYSFSETTTT TTLSPEINRK KLQNVEHLVQ
601: KLKRLNSSHD ETSQDYIASL CENNDPNTDH RYISEILLAS GLLLRDLSSE LTTFQLHPSG HPINPELFLV LEQTKGRSSG YEKLNRKLVF DAVNETLVKK
701: LAIKDPWMKR KVLSAQQLLK EVCSEIETVK KKAEKRSGNL LLLEEQEEDF LKCILDEDVR TRSEKWTDFD DVVPGLVLDI ERLLFKDLVN EVVHVKLELK
801: DVEVSDASRD YHHPQRNSKG V
001: MAAKLLHTLA DENSDLQKKI GCMNGIFQIF DRHHILTSRR KSLTLGNAHV NSINFERDSV DAICQQRSAF QCQDSNLVSS NGLSEKLTRL STECSRVSFS
101: SSCSSSSPLS SEVNREVQPE ISADDRVIFP ESPTSDPVMS QGTGARVGLD LRDVVRDSMY REARGLSDVC RQNRREDSPR PYGLKQSRPV DFNESCRALA
201: KLRKTSHHYY NEVDMKDTSR YYVDSRGKSK SGKKLKELPR LSLDSRDHVD LKSGNKLSES FSRSSSMNKV SGSPKRPPSV VAKLMGLETL PGSPLSRDRF
301: NMFDDNSDPF ARSLRENSLN RSLRFSPSSP RSLGKDPAAS SSSPRWRSSE FVMKPLSSLR YPIEPAPWKQ TERNRFSQKQ ACRSVKSLSQ SMEGKLKDLE
401: VKHSGKDLRA LKDILEAMQS KGLFDTRKQQ QCSNLEAQRD YELADSATSK HDSIDLRNPV IPSNMRGPIV IMKPARLVEK SGIPSSSLIP IHSLSGLNKT
501: CREEPVNVRR SSTSRKAVKD RSPGNQRAEP CISSDKKSSS RNVMSSQVYK ESTSKNSGPA SSKLQQMKPE HDKRSRPPAS PSDSSKLRKQ ISRQPVESTT
601: SPGGRRSRPR DQRSLQQNDG QLSQMSNKSR TKIEATLSIE NGGKSPSVIE AAKAVVSNLI QNKSSPTFSE DGSSEHPSPV SVLNAEIYRE IEPSPVKIQA
701: SEGSVNGSIN SGVEHCEEDQ WNPAYSFSKT TTSFSPEMNR KKLQNVEHLV QKLKRLNSSH DETSQDYIAS LCENSDPDTD HRYISEILLA SGLLLRDLGS
801: GLTTFQLHPS GHPINPELFL VIEQTKGCSS SSNEKINRKL VFDAVNEMLG KKLAFVESYV DPWMKQAKAR KKVLSAQNLL KELCSEIEIL QKQAKKRSEN
901: LLLLEEEEEE EEDFLKCILD EDMAIQSEKW TDFDDAIPGL VLDMERLLFK DLVKEIVHGE IDRLQGNSRR QKTVLADE
101: SSCSSSSPLS SEVNREVQPE ISADDRVIFP ESPTSDPVMS QGTGARVGLD LRDVVRDSMY REARGLSDVC RQNRREDSPR PYGLKQSRPV DFNESCRALA
201: KLRKTSHHYY NEVDMKDTSR YYVDSRGKSK SGKKLKELPR LSLDSRDHVD LKSGNKLSES FSRSSSMNKV SGSPKRPPSV VAKLMGLETL PGSPLSRDRF
301: NMFDDNSDPF ARSLRENSLN RSLRFSPSSP RSLGKDPAAS SSSPRWRSSE FVMKPLSSLR YPIEPAPWKQ TERNRFSQKQ ACRSVKSLSQ SMEGKLKDLE
401: VKHSGKDLRA LKDILEAMQS KGLFDTRKQQ QCSNLEAQRD YELADSATSK HDSIDLRNPV IPSNMRGPIV IMKPARLVEK SGIPSSSLIP IHSLSGLNKT
501: CREEPVNVRR SSTSRKAVKD RSPGNQRAEP CISSDKKSSS RNVMSSQVYK ESTSKNSGPA SSKLQQMKPE HDKRSRPPAS PSDSSKLRKQ ISRQPVESTT
601: SPGGRRSRPR DQRSLQQNDG QLSQMSNKSR TKIEATLSIE NGGKSPSVIE AAKAVVSNLI QNKSSPTFSE DGSSEHPSPV SVLNAEIYRE IEPSPVKIQA
701: SEGSVNGSIN SGVEHCEEDQ WNPAYSFSKT TTSFSPEMNR KKLQNVEHLV QKLKRLNSSH DETSQDYIAS LCENSDPDTD HRYISEILLA SGLLLRDLGS
801: GLTTFQLHPS GHPINPELFL VIEQTKGCSS SSNEKINRKL VFDAVNEMLG KKLAFVESYV DPWMKQAKAR KKVLSAQNLL KELCSEIEIL QKQAKKRSEN
901: LLLLEEEEEE EEDFLKCILD EDMAIQSEKW TDFDDAIPGL VLDMERLLFK DLVKEIVHGE IDRLQGNSRR QKTVLADE
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1); Has 1987 Blast hits to 1263 proteins in 207 species: Archae - 0; Bacteria - 172; Metazoa - 665; Fungi - 149; Plants - 271; Viruses - 6; Other Eukaryotes /.../ (source: NCBI BLink). [Source:TAIR;Acc:AT1G18620]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.