Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60473 | Canola | nucleus | 80.89 | 81.48 |
| AT3G02170.1 | Thale cress | nucleus | 72.24 | 66.41 |
| CDX74270 | Canola | nucleus | 68.15 | 66.16 |
| CDX91979 | Canola | nucleus | 67.67 | 65.85 |
| CDX85545 | Canola | nucleus | 48.8 | 50.56 |
| CDX90985 | Canola | nucleus | 49.88 | 48.65 |
| CDX69516 | Canola | nucleus | 51.68 | 47.99 |
| CDY26440 | Canola | nucleus | 49.16 | 45.8 |
| VIT_14s0068g00360.t01 | Wine grape | nucleus | 34.13 | 29.01 |
| CDY49132 | Canola | nucleus | 30.77 | 27.86 |
| CDY42438 | Canola | nucleus | 31.25 | 27.63 |
| PGSC0003DMT400003717 | Potato | nucleus | 29.93 | 26.35 |
| CDX81888 | Canola | nucleus | 26.08 | 26.08 |
| CDY59655 | Canola | nucleus | 25.96 | 25.87 |
| CDX83829 | Canola | cytosol | 25.48 | 25.82 |
| CDX96710 | Canola | nucleus | 27.04 | 25.68 |
| KRH01314 | Soybean | nucleus | 30.05 | 25.67 |
| KRH45061 | Soybean | nucleus | 29.93 | 25.59 |
| KRG93656 | Soybean | nucleus | 30.29 | 25.51 |
| KRH18379 | Soybean | nucleus | 30.05 | 25.38 |
| Solyc02g089050.2.1 | Tomato | nucleus | 22.24 | 25.2 |
| GSMUA_Achr4P32860_001 | Banana | nucleus | 29.09 | 24.77 |
| HORVU2Hr1G032710.2 | Barley | cytosol | 28.12 | 24.5 |
| TraesCS2D01G183400.1 | Wheat | nucleus | 28.0 | 24.42 |
| TraesCS2A01G176000.1 | Wheat | nucleus | 28.0 | 24.32 |
| TraesCS2B01G202300.1 | Wheat | nucleus | 27.52 | 24.11 |
| Solyc02g089030.1.1 | Tomato | nucleus | 2.04 | 23.94 |
| TraesCS2B01G281200.2 | Wheat | cytosol | 30.53 | 23.83 |
| Os07t0109400-01 | Rice | nucleus | 31.13 | 23.78 |
| GSMUA_Achr7P26670_001 | Banana | nucleus | 19.71 | 23.67 |
| Zm00001d022072_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 26.8 | 23.45 |
| Os03t0418700-02 | Rice | nucleus | 26.08 | 23.43 |
| Os07t0603300-01 | Rice | nucleus | 26.44 | 23.4 |
| TraesCS2D01G262900.1 | Wheat | cytosol | 30.17 | 23.33 |
| Zm00001d019700_P006 | Maize | nucleus | 29.81 | 23.29 |
| HORVU2Hr1G063820.1 | Barley | cytosol | 30.05 | 23.28 |
| KXG36646 | Sorghum | nucleus | 26.8 | 23.25 |
| EER98557 | Sorghum | nucleus | 30.29 | 23.25 |
| TraesCS2A01G261000.1 | Wheat | cytosol | 29.81 | 23.11 |
| GSMUA_Achr4P07300_001 | Banana | cytosol | 25.0 | 22.96 |
| Zm00001d006828_P001 | Maize | nucleus | 26.2 | 22.83 |
| Zm00001d005297_P006 | Maize | nucleus | 29.21 | 22.09 |
| KXG39125 | Sorghum | plastid | 23.92 | 21.8 |
| GSMUA_Achr4P14410_001 | Banana | nucleus | 21.15 | 20.28 |
Protein Annotations
| EnsemblPlants:CDY43253 | EnsemblPlantsGene:GSBRNA2T00076284001 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016049 | GO:GO:0040007 | GO:GO:0051513 | InterPro:DUF4378 | InterPro:LNG1/2 | ncoils:Coil |
| PANTHER:PTHR31680 | PANTHER:PTHR31680:SF4 | PFAM:PF14309 | ProteinID:CDY43253 | ProteinID:CDY43253.1 | SEG:seg |
| UniParc:UPI0004EDFBE1 | UniProt:A0A078I2A1 | MapMan:13.4.1.2.2 | : | : | : |
Description
BnaC05g48460DBnaC05g48460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I2A1]
Coordinates
chrLK032550:+:102611..105608
Molecular Weight (calculated)
93525.8 Da
IEP (calculated)
9.862
GRAVY (calculated)
-0.842
Length
832 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAKLLHNLS DENPNLNKQF GCMNGILQVF HRQQYPARPV YSDVEKSLPP GERKDLVGEI NMESDKETGK STKKKKKSAV KEKHRASSES SSRPSFSSSP
101: RSSSFSSTEV STTASQFDQP GEKQIREQPN VVPMMPFDLK EHVKGSINRE MRTRSEETAA FTQQQQPNSA RTSSNEWNEG RGRALKFKES HTLSYDEREM
201: RNNGYKMGSK LKETPRLSLD SRSSPPPTVS HRRSSSSIVA KLMGLEVIAD NFAAEQRKEN LFCDSPRPQP TALQRSRSVG SIKKILPASS KFPMEPAPWK
301: QMKAGDAAPT VYGEIQKRLT QLEFNKAGKD LRALKQILEA MEKTQKTHQL VPAATSPAAM NSKSTSIVVM KPAAPVSTSS LQQKAALPNV NVGNTRQTQK
401: VTSGKQNIDS TKSTSTKPIR SRQTLVAKSG KSQQQSVSPR MQPKKLGFER QSRPTTPKSE PGKIQRQLGS RQHTESVSPR RKQGIKPRSS LQQLDDRVIE
501: ANSDLRSLRS DSNIYLGSNV DIEVTSKHRL ERNCDFTELH TPKQRNPDFR TEQDRPSLKP LKVTVEQPSP VSVLDAAFDE EDSPSPVGKI SLSFKEDDEL
601: RSEASMWINK PTGVCRSILL PENKGPTQTD SDLLECFPDE DANIKSGDHK YISEILLASG LLKDLEYSKI SIQLNQARLP INPGLFFFLE QNKDSNMTLL
701: DNKHRGRGFR QQQTNLTEKI RRKLVFDTVN EILAQRFTAE GCTKPRFTAN PVATMENKSK GEKLLQTLCS EIDRLQENKS KCILEDDEED IIWEELQCQG
801: MNLKEFEGEN PGIVLDIERM IFRDLVSEVC FC
101: RSSSFSSTEV STTASQFDQP GEKQIREQPN VVPMMPFDLK EHVKGSINRE MRTRSEETAA FTQQQQPNSA RTSSNEWNEG RGRALKFKES HTLSYDEREM
201: RNNGYKMGSK LKETPRLSLD SRSSPPPTVS HRRSSSSIVA KLMGLEVIAD NFAAEQRKEN LFCDSPRPQP TALQRSRSVG SIKKILPASS KFPMEPAPWK
301: QMKAGDAAPT VYGEIQKRLT QLEFNKAGKD LRALKQILEA MEKTQKTHQL VPAATSPAAM NSKSTSIVVM KPAAPVSTSS LQQKAALPNV NVGNTRQTQK
401: VTSGKQNIDS TKSTSTKPIR SRQTLVAKSG KSQQQSVSPR MQPKKLGFER QSRPTTPKSE PGKIQRQLGS RQHTESVSPR RKQGIKPRSS LQQLDDRVIE
501: ANSDLRSLRS DSNIYLGSNV DIEVTSKHRL ERNCDFTELH TPKQRNPDFR TEQDRPSLKP LKVTVEQPSP VSVLDAAFDE EDSPSPVGKI SLSFKEDDEL
601: RSEASMWINK PTGVCRSILL PENKGPTQTD SDLLECFPDE DANIKSGDHK YISEILLASG LLKDLEYSKI SIQLNQARLP INPGLFFFLE QNKDSNMTLL
701: DNKHRGRGFR QQQTNLTEKI RRKLVFDTVN EILAQRFTAE GCTKPRFTAN PVATMENKSK GEKLLQTLCS EIDRLQENKS KCILEDDEED IIWEELQCQG
801: MNLKEFEGEN PGIVLDIERM IFRDLVSEVC FC
001: MSAKLLYNLS DENPNLNKQF GCMNGIFQVF YRQHCPATPV TVSGGAEKSL PPGERRGSVG ETNMESDKET ERSSTKKKKS AAKEKHRVSF ESSSRPSFSS
101: SPRSSSFSSA EVSTTASQFD QPGENLIREQ PNGGLMMPYD LKELVKGSIN REIRTRGEEA SFTQQQQPIS ARSSMLLLKE SSLRSPCRSS NEWNEGRGAA
201: MKFKESHRLS YDEREMRNNG FRVGSKLKET PRLSLDSRSN SFRSPRADAA RSSCPEEPAT MTHRRSSSSV VAKLMGLEVI ADNSDTEQRR ENRFCDSPRP
301: MSRVEPTALQ RSRSVDSIKR IPASAASKFP MEPAPWKQMK AGDSALTVYG EIQKRLTQLE FKKSGKDLRA LKQILEAMEK TQQLIDESRD DGTLSTTTLM
401: QRTHKPVSAA TSPARNFKSS SIVVMKSAAP VSTSPLPQNV TLPNVKVGNS RQTRKVTSGK QNAMDLTPRP GLYKGQLDST KSNSPKTVRS RQALAADAGS
501: MTKSGRSQQH SVSPRTQPKK LGFEKQTRPT TPKSEPGKRQ LGRQQTEVAS PRRKQMIKPH STLQQPDDRL SDARSDLRSL RSDSNISLGS NVDIEVTSRH
601: RLERNCDFPE QHTPKQRSPD FGIKQDRPSL KPLKVTVEQP SPVSVLDAVF DEEDSPSPVR KISLSFKEED ALRSEESEWI NKPTSFCRSV PFPQSNRGPM
701: KPSSDHFECS PEEGADFKSG NHKYILEILL ASGILRDLEY SMISFQLHQT RLPINPGLFF ILEQNKASNV TLPDNKHRGR GFRQQQTNPT ETIRRKLVFD
801: TVNEILARKF TAEGCIKPRL IANPLKKLEK ISKEEQLLQT LCSEIDRLQQ NNSNCILEDD EEDIIWEDLQ SQSMNLKEFE GETPGIVLDI ERMIFRDLVN
901: EVCFC
101: SPRSSSFSSA EVSTTASQFD QPGENLIREQ PNGGLMMPYD LKELVKGSIN REIRTRGEEA SFTQQQQPIS ARSSMLLLKE SSLRSPCRSS NEWNEGRGAA
201: MKFKESHRLS YDEREMRNNG FRVGSKLKET PRLSLDSRSN SFRSPRADAA RSSCPEEPAT MTHRRSSSSV VAKLMGLEVI ADNSDTEQRR ENRFCDSPRP
301: MSRVEPTALQ RSRSVDSIKR IPASAASKFP MEPAPWKQMK AGDSALTVYG EIQKRLTQLE FKKSGKDLRA LKQILEAMEK TQQLIDESRD DGTLSTTTLM
401: QRTHKPVSAA TSPARNFKSS SIVVMKSAAP VSTSPLPQNV TLPNVKVGNS RQTRKVTSGK QNAMDLTPRP GLYKGQLDST KSNSPKTVRS RQALAADAGS
501: MTKSGRSQQH SVSPRTQPKK LGFEKQTRPT TPKSEPGKRQ LGRQQTEVAS PRRKQMIKPH STLQQPDDRL SDARSDLRSL RSDSNISLGS NVDIEVTSRH
601: RLERNCDFPE QHTPKQRSPD FGIKQDRPSL KPLKVTVEQP SPVSVLDAVF DEEDSPSPVR KISLSFKEED ALRSEESEWI NKPTSFCRSV PFPQSNRGPM
701: KPSSDHFECS PEEGADFKSG NHKYILEILL ASGILRDLEY SMISFQLHQT RLPINPGLFF ILEQNKASNV TLPDNKHRGR GFRQQQTNPT ETIRRKLVFD
801: TVNEILARKF TAEGCIKPRL IANPLKKLEK ISKEEQLLQT LCSEIDRLQQ NNSNCILEDD EEDIIWEDLQ SQSMNLKEFE GETPGIVLDI ERMIFRDLVN
901: EVCFC
Arabidopsis Description
LNG2Protein LONGIFOLIA 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S823]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.