Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69516 | Canola | nucleus | 84.32 | 84.04 |
| AT5G15580.1 | Thale cress | nucleus | 73.57 | 70.87 |
| CDX85545 | Canola | nucleus | 63.05 | 70.11 |
| CDX90985 | Canola | nucleus | 63.05 | 66.0 |
| CDX91979 | Canola | nucleus | 47.48 | 49.59 |
| CDY60473 | Canola | nucleus | 45.58 | 49.27 |
| CDY43253 | Canola | nucleus | 45.8 | 49.16 |
| CDX74270 | Canola | nucleus | 46.36 | 48.31 |
| Solyc02g089030.1.1 | Tomato | nucleus | 2.8 | 35.21 |
| VIT_14s0068g00360.t01 | Wine grape | nucleus | 33.82 | 30.85 |
| CDY49132 | Canola | nucleus | 29.56 | 28.73 |
| CDY42438 | Canola | nucleus | 30.12 | 28.59 |
| CDY59655 | Canola | nucleus | 25.98 | 27.78 |
| KRH01314 | Soybean | nucleus | 29.9 | 27.41 |
| CDX81888 | Canola | nucleus | 25.31 | 27.16 |
| CDX83829 | Canola | cytosol | 24.86 | 27.04 |
| KRH45061 | Soybean | nucleus | 29.45 | 27.03 |
| CDX96710 | Canola | nucleus | 25.42 | 25.91 |
| KRG93656 | Soybean | nucleus | 28.56 | 25.81 |
| KRH18379 | Soybean | nucleus | 28.44 | 25.79 |
| PGSC0003DMT400003717 | Potato | nucleus | 27.1 | 25.61 |
| TraesCS2A01G176000.1 | Wheat | nucleus | 25.64 | 23.9 |
| GSMUA_Achr4P32860_001 | Banana | nucleus | 26.09 | 23.85 |
| TraesCS2D01G183400.1 | Wheat | nucleus | 25.42 | 23.79 |
| HORVU2Hr1G032710.2 | Barley | cytosol | 25.42 | 23.77 |
| Solyc02g089050.2.1 | Tomato | nucleus | 19.48 | 23.71 |
| TraesCS2B01G202300.1 | Wheat | nucleus | 25.08 | 23.58 |
| TraesCS2B01G281200.2 | Wheat | cytosol | 28.0 | 23.45 |
| Os07t0603300-01 | Rice | nucleus | 24.3 | 23.09 |
| TraesCS2D01G262900.1 | Wheat | cytosol | 27.77 | 23.05 |
| Os07t0109400-01 | Rice | nucleus | 27.88 | 22.86 |
| TraesCS2A01G261000.1 | Wheat | cytosol | 27.44 | 22.83 |
| Zm00001d019700_P006 | Maize | nucleus | 27.21 | 22.82 |
| HORVU2Hr1G063820.1 | Barley | cytosol | 27.44 | 22.81 |
| GSMUA_Achr7P26670_001 | Banana | nucleus | 17.69 | 22.8 |
| Os03t0418700-02 | Rice | nucleus | 23.4 | 22.57 |
| KXG36646 | Sorghum | nucleus | 24.19 | 22.52 |
| EER98557 | Sorghum | nucleus | 27.32 | 22.51 |
| GSMUA_Achr4P07300_001 | Banana | cytosol | 22.62 | 22.3 |
| Zm00001d006828_P001 | Maize | nucleus | 23.63 | 22.09 |
| Zm00001d022072_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 23.4 | 21.98 |
| Zm00001d005297_P006 | Maize | nucleus | 26.88 | 21.82 |
| GSMUA_Achr4P14410_001 | Banana | nucleus | 20.72 | 21.31 |
| KXG39125 | Sorghum | plastid | 20.72 | 20.26 |
Protein Annotations
| EnsemblPlants:CDY26440 | EnsemblPlantsGene:GSBRNA2T00035234001 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016049 | GO:GO:0040007 | GO:GO:0051513 | InterPro:DUF3741-assoc | InterPro:DUF4378 | InterPro:LNG1/2 |
| ncoils:Coil | PANTHER:PTHR31680 | PANTHER:PTHR31680:SF4 | PFAM:PF14309 | PFAM:PF14383 | ProteinID:CDY26440 |
| ProteinID:CDY26440.1 | SEG:seg | UniParc:UPI0004EF13A8 | UniProt:A0A078GIW6 | MapMan:13.4.1.2.2 | : |
Description
BnaC09g42280DBnaC09g42280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GIW6]
Coordinates
chrLK032190:-:152206..155856
Molecular Weight (calculated)
99969.3 Da
IEP (calculated)
10.051
GRAVY (calculated)
-0.759
Length
893 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAKLLYNLS DENPNLNKQF GCMNGIFQVF YRQHYPARRV SVAGDELKSL PSGKTSDNVG VTNVSTDKKE TEKSKKKRRL QRRNRRLSPL NLPRGCRFLL
101: HHAPLASPLQ ISAPRLLNLN NLTPVREPTN GSPRWGGLVM SSDLRELVRS SIHKETRTRD EEALSQQPKS ARANVSLLKE PSPSRSSNEW SEGRRVVKLK
201: DSPRFSYDER ETRKTGAKFK ETPRLSLDSR SNSFRSAKSS CSPEAQDLVT TGHRRTTSSV VAKLMGLDVI PDEPVTDQSR ENHFCDSPRP APRVEADLQR
301: SRGSDSFKKM MPAAKFPVKT APWSQVDGGA RNQVKAADAA ATLTVYGEIQ KRLSQLEFKK SEKDLRALQQ ILEAMEKTQQ LMSKDDDNSS LSSTSFMQPS
401: PSSKSIRSSS IVVMKASSAP VFKERSNSSS TSSSPRSVAL PNVKVSNQKV TQRKQSAMDV TPRPATKNTS TRPLQSKIEI AKSRKSSVSP RAQPKKLGFE
501: KQSRPTSPKP EPNKNQRQQL IRPQTESASP RRKPGVKSRG VQQSEDRLSD ECSDLRSLRS DSNVSSASNL DIEVTSRYKC DLTEQHTPKQ RSPELGMRSL
601: PKPLKITVEQ PSPVSILDVP FDDDESPSPV RKISIVFKDD DHIRSEESLW MNKHNNLCRS IVWPESNTSL TQPDAELTES FTEEGAEIRI GDHKYISEIL
701: SASGLLKDID YNMLSIQLHQ AHLPINPSLF FVLEQNKTSN VTHRGRGFGQ QTANLIGRSM RKLVFDTVNE ILARKFAAEG CTKQPYITSP IRPLMTADKS
801: SRGEVLLETL CSEIDRLQDN SSCILDEDDE DLIWEDLQGQ GMNWKEIEGE TPGLVLDIER LIFKDLISEV VTSEVAAFPG NKLSGQPRQL FHC
101: HHAPLASPLQ ISAPRLLNLN NLTPVREPTN GSPRWGGLVM SSDLRELVRS SIHKETRTRD EEALSQQPKS ARANVSLLKE PSPSRSSNEW SEGRRVVKLK
201: DSPRFSYDER ETRKTGAKFK ETPRLSLDSR SNSFRSAKSS CSPEAQDLVT TGHRRTTSSV VAKLMGLDVI PDEPVTDQSR ENHFCDSPRP APRVEADLQR
301: SRGSDSFKKM MPAAKFPVKT APWSQVDGGA RNQVKAADAA ATLTVYGEIQ KRLSQLEFKK SEKDLRALQQ ILEAMEKTQQ LMSKDDDNSS LSSTSFMQPS
401: PSSKSIRSSS IVVMKASSAP VFKERSNSSS TSSSPRSVAL PNVKVSNQKV TQRKQSAMDV TPRPATKNTS TRPLQSKIEI AKSRKSSVSP RAQPKKLGFE
501: KQSRPTSPKP EPNKNQRQQL IRPQTESASP RRKPGVKSRG VQQSEDRLSD ECSDLRSLRS DSNVSSASNL DIEVTSRYKC DLTEQHTPKQ RSPELGMRSL
601: PKPLKITVEQ PSPVSILDVP FDDDESPSPV RKISIVFKDD DHIRSEESLW MNKHNNLCRS IVWPESNTSL TQPDAELTES FTEEGAEIRI GDHKYISEIL
701: SASGLLKDID YNMLSIQLHQ AHLPINPSLF FVLEQNKTSN VTHRGRGFGQ QTANLIGRSM RKLVFDTVNE ILARKFAAEG CTKQPYITSP IRPLMTADKS
801: SRGEVLLETL CSEIDRLQDN SSCILDEDDE DLIWEDLQGQ GMNWKEIEGE TPGLVLDIER LIFKDLISEV VTSEVAAFPG NKLSGQPRQL FHC
001: MSAKLLYNLS DENPNLNKQI GCMNGIFQVF YRQHYPPRRV TGDELKSLPS GKASDNVGDT NISADKKETE KSKKKKTAKE KQRGVSSESS SRLSFSSSPC
101: SSSFSSADIS TTASQFEQPG LSNGENPVRE PTNGSPRWGG LMMPSDIREL VRSSIHKETR TRDEEALSQQ PKSARANVSL LKESSPSRNS NEWSEGRRVV
201: KLKDSPRFSY DERETRKTGA KLKETPRLSL DSRSNSFRSA RSSCSPEPQE LVTGHRRTTS SVVAKLMGLE VIPDEPVTIQ NRENRFCDSP RPTSRVEVDL
301: QRSRGFDSIK KMMPAKFPMK ASPWAQVDGA KNQVKIPDAT TLTVYGEIQK RLSQLEFKKS EKDLRALKQI LEAMEKTQQL ISKDDDDNKT LCSSNFMQRN
401: NQPIPSAINT SSMNFKSSSI VVMKAATAPV FKDTGIAGSA SFSPRNVALP NVKVGNLRQA QKVIPRKQSA MDVTPRPGYY KGQTESTMKN TSTRPLQSKS
501: DMAKSGKIQK PSVSLRTPPK KLGFEKQSRP TSPKPELNKN QRQQLSRQQT ESASPRRKPG IKSRGLQQSE DRLSDESSDL RSLRSDSNVS LASNLDTEVT
601: SRYNYERNSD ITEQHTPKQR SPDLGMRSLS KPLKVTVEQP SPVSVLDVAF DEDDSPSPVR KISIVFKEDD NLSSEESHWM NKNNNLCRSI VWPESNTSLK
701: QPDAELTEGF MEDDAEFKNG DHKYISEIML ASGLLRDIDY SMISIQLHQA HLPINPSLFF VLEQNKTSNV SLQDNKHKGR GFGQQQTVNL VERSKRKLIF
801: DTINEILAHR FAAEGCTKQP SITLSISTQR THEKSSRGEE LLQTLCSEID RLQDNSKCIL DEDDEDLIWE DLQSHGMNWK EIEGETPGLV LDIERLIFKD
901: LIGEVVTSEF AAFPRMLSGQ PRQLFHC
101: SSSFSSADIS TTASQFEQPG LSNGENPVRE PTNGSPRWGG LMMPSDIREL VRSSIHKETR TRDEEALSQQ PKSARANVSL LKESSPSRNS NEWSEGRRVV
201: KLKDSPRFSY DERETRKTGA KLKETPRLSL DSRSNSFRSA RSSCSPEPQE LVTGHRRTTS SVVAKLMGLE VIPDEPVTIQ NRENRFCDSP RPTSRVEVDL
301: QRSRGFDSIK KMMPAKFPMK ASPWAQVDGA KNQVKIPDAT TLTVYGEIQK RLSQLEFKKS EKDLRALKQI LEAMEKTQQL ISKDDDDNKT LCSSNFMQRN
401: NQPIPSAINT SSMNFKSSSI VVMKAATAPV FKDTGIAGSA SFSPRNVALP NVKVGNLRQA QKVIPRKQSA MDVTPRPGYY KGQTESTMKN TSTRPLQSKS
501: DMAKSGKIQK PSVSLRTPPK KLGFEKQSRP TSPKPELNKN QRQQLSRQQT ESASPRRKPG IKSRGLQQSE DRLSDESSDL RSLRSDSNVS LASNLDTEVT
601: SRYNYERNSD ITEQHTPKQR SPDLGMRSLS KPLKVTVEQP SPVSVLDVAF DEDDSPSPVR KISIVFKEDD NLSSEESHWM NKNNNLCRSI VWPESNTSLK
701: QPDAELTEGF MEDDAEFKNG DHKYISEIML ASGLLRDIDY SMISIQLHQA HLPINPSLFF VLEQNKTSNV SLQDNKHKGR GFGQQQTVNL VERSKRKLIF
801: DTINEILAHR FAAEGCTKQP SITLSISTQR THEKSSRGEE LLQTLCSEID RLQDNSKCIL DEDDEDLIWE DLQSHGMNWK EIEGETPGLV LDIERLIFKD
901: LIGEVVTSEF AAFPRMLSGQ PRQLFHC
Arabidopsis Description
LNG1Protein LONGIFOLIA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.