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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:
  • plastid 2
  • mitochondrion 1
  • endoplasmic reticulum 4
  • extracellular 3
  • vacuole 3
  • plasma membrane 3
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, golgi
Any Predictor:plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:golgi
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70995
CDX88803
CDX92368
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G04430.1 CDX70995 AT5G22290.1 21798944
AT1G04430.1 CDX88803 AT5G22290.1 21798944
AT1G04430.1 CDX92368 AT5G22290.1 21798944
AT1G04430.1 CDY09128 AT5G22290.1 21798944
AT1G04430.1 CDY35676 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra015316.1-P Field mustard endoplasmic reticulum, golgi 99.84 99.36
CDY18232 Canola endoplasmic reticulum, golgi, plasma membrane 99.19 99.19
CDY15505 Canola endoplasmic reticulum, golgi 95.16 95.16
CDX86634 Canola endoplasmic reticulum, golgi 94.84 94.84
AT1G04430.1 Thale cress endoplasmic reticulum, golgi 92.26 91.81
CDX94861 Canola endoplasmic reticulum, golgi 77.58 79.77
CDX92981 Canola endoplasmic reticulum, golgi 77.58 79.37
CDY68608 Canola endoplasmic reticulum, golgi, vacuole 78.06 78.96
CDX85084 Canola endoplasmic reticulum, golgi, vacuole 77.74 78.89
GSMUA_Achr1P20520_001 Banana endoplasmic reticulum, golgi, vacuole 74.68 74.56
GSMUA_Achr6P36560_001 Banana endoplasmic reticulum, golgi, vacuole 74.35 74.35
GSMUA_Achr5P21350_001 Banana endoplasmic reticulum 72.74 72.62
Zm00001d032703_P006 Maize endoplasmic reticulum, golgi, vacuole 71.13 72.41
Os10t0477100-01 Rice golgi 71.13 71.47
OQU91634 Sorghum endoplasmic reticulum, golgi 70.97 71.43
TraesCS1D01G153300.1 Wheat endoplasmic reticulum, golgi 70.97 71.43
TraesCS1B01G170600.2 Wheat endoplasmic reticulum, golgi 70.97 71.43
TraesCS1A01G154400.2 Wheat golgi 69.35 68.36
Zm00001d014036_P002 Maize endoplasmic reticulum 70.97 67.28
CDX70565 Canola endoplasmic reticulum 59.35 60.53
CDX78577 Canola endoplasmic reticulum, golgi 59.03 60.2
CDY50730 Canola cytosol 34.68 43.35
CDY43336 Canola cytosol 13.06 42.19
CDX83493 Canola golgi 28.06 42.03
CDX85977 Canola cytosol 32.58 41.82
CDY01971 Canola endoplasmic reticulum, extracellular 27.74 41.35
CDX93797 Canola cytosol 31.94 40.99
CDX70263 Canola plastid 38.87 40.71
CDY00911 Canola mitochondrion 38.06 40.34
CDY08621 Canola mitochondrion, plastid 37.42 39.73
CDX88354 Canola cytosol, endoplasmic reticulum, golgi 41.45 39.66
CDY10370 Canola cytosol 17.58 39.64
CDY57187 Canola cytosol 19.68 39.1
CDX87530 Canola cytosol, golgi, peroxisome, plastid 40.65 38.83
CDX99540 Canola cytosol 32.9 37.99
CDY37061 Canola endoplasmic reticulum, golgi, mitochondrion, plastid 38.23 37.74
CDY24949 Canola endoplasmic reticulum, plasma membrane 41.13 37.72
CDY18904 Canola endoplasmic reticulum 38.39 37.6
CDY40268 Canola endoplasmic reticulum, golgi 36.61 37.46
CDY07639 Canola endoplasmic reticulum 40.81 37.37
CDY54063 Canola mitochondrion 33.39 37.36
CDY07611 Canola endoplasmic reticulum, extracellular, vacuole 35.16 37.33
CDY70748 Canola cytosol, peroxisome 25.81 37.21
CDY70936 Canola cytosol 10.97 37.16
CDX84046 Canola cytosol 36.61 37.09
CDX74761 Canola cytosol, endoplasmic reticulum, mitochondrion, plastid 37.74 37.03
CDY45006 Canola endoplasmic reticulum, golgi 36.13 37.02
CDY16198 Canola endoplasmic reticulum, golgi 36.13 36.96
CDX94256 Canola cytosol 36.77 36.83
CDY46435 Canola endoplasmic reticulum, golgi 35.81 36.82
CDY25257 Canola cytosol 36.77 36.77
CDY44966 Canola cytosol 36.45 36.45
CDY20475 Canola endoplasmic reticulum, golgi 40.48 36.43
CDX76494 Canola endoplasmic reticulum, golgi 34.35 36.35
CDX74837 Canola mitochondrion 40.32 36.28
CDX98897 Canola golgi, mitochondrion 40.48 36.22
CDX90190 Canola golgi, mitochondrion, plasma membrane, plastid, vacuole 39.84 35.95
CDX99539 Canola cytosol 36.13 35.84
CDY33299 Canola nucleus 34.84 35.76
CDY09274 Canola cytosol, endoplasmic reticulum, golgi 34.03 35.7
CDX91893 Canola endoplasmic reticulum, mitochondrion, plasma membrane, plastid 34.03 35.34
CDY67792 Canola cytosol, endoplasmic reticulum, golgi 34.35 35.32
CDY47694 Canola cytosol, endoplasmic reticulum, golgi 34.35 35.32
CDY47695 Canola cytosol, endoplasmic reticulum, golgi 34.35 35.32
CDX74348 Canola plastid 33.87 35.18
CDY12278 Canola endoplasmic reticulum, golgi 34.03 35.17
CDY22567 Canola endoplasmic reticulum, golgi 33.87 35.0
CDY68187 Canola mitochondrion 34.52 34.68
CDY07198 Canola mitochondrion 33.39 34.56
CDY03207 Canola cytosol, endoplasmic reticulum, golgi, mitochondrion 34.52 34.41
CDX78823 Canola endoplasmic reticulum, golgi, vacuole 34.35 34.35
CDY43341 Canola endoplasmic reticulum, golgi, vacuole 33.39 34.21
CDX84330 Canola endoplasmic reticulum, plasma membrane 38.55 33.52
CDX99828 Canola golgi 40.32 33.33
CDY44314 Canola endoplasmic reticulum 40.0 33.33
CDX94669 Canola endoplasmic reticulum 40.16 33.24
CDY66535 Canola nucleus 35.0 33.13
CDY51142 Canola cytosol 32.9 33.06
CDY48339 Canola cytosol 40.16 32.94
CDY31339 Canola plasma membrane 40.32 32.72
CDX98606 Canola vacuole 34.84 32.53
CDY01583 Canola endoplasmic reticulum, plasma membrane, vacuole 34.35 32.42
CDY39830 Canola plasma membrane 40.32 32.38
CDY24913 Canola mitochondrion 34.52 31.85
CDX76062 Canola endoplasmic reticulum, golgi, vacuole 33.55 31.52
CDY61681 Canola endoplasmic reticulum, golgi 34.52 31.38
CDY17234 Canola endoplasmic reticulum, mitochondrion, plasma membrane, vacuole 38.55 31.36
CDY66721 Canola golgi 26.61 31.19
CDY43782 Canola endoplasmic reticulum, golgi, mitochondrion, plasma membrane 39.52 30.66
CDX78919 Canola cytosol, golgi 34.68 30.41
CDY26534 Canola extracellular, golgi, mitochondrion, plasma membrane, plastid 36.45 29.47
CDX84478 Canola endoplasmic reticulum, golgi, mitochondrion, plasma membrane 39.68 29.29
CDY35169 Canola cytosol, endoplasmic reticulum, golgi 34.19 29.24
CDY26666 Canola mitochondrion 31.29 27.06
CDY67390 Canola mitochondrion 31.29 26.94
CDX70102 Canola cytosol 40.48 26.67
CDY27362 Canola plasma membrane 37.9 23.29
CDY72237 Canola nucleus 9.52 14.71
CDY33300 Canola plastid 1.13 2.93
Protein Annotations
KEGG:00253+2.1.1.-KEGG:00270+2.1.1.-KEGG:00332+2.1.1.-KEGG:00340+2.1.1.-KEGG:00350+2.1.1.-KEGG:00360+2.1.1.-
KEGG:00380+2.1.1.-KEGG:00450+2.1.1.-KEGG:00522+2.1.1.-KEGG:00523+2.1.1.-KEGG:00624+2.1.1.-KEGG:00627+2.1.1.-
KEGG:00860+2.1.1.-KEGG:00940+2.1.1.-KEGG:00941+2.1.1.-KEGG:00942+2.1.1.-KEGG:00945+2.1.1.-KEGG:00950+2.1.1.-
KEGG:00981+2.1.1.-Gene3D:3.40.50.150MapMan:35.1GO:A0A078DMR0EnsemblPlants:CDX89824ProteinID:CDX89824
ProteinID:CDX89824.1GO:GO:0003674GO:GO:0003824GO:GO:0008150GO:GO:0008152GO:GO:0008168
GO:GO:0016740EnsemblPlantsGene:GSBRNA2T00150279001PFAM:PF03141PANTHER:PTHR10108PANTHER:PTHR10108:SF704InterPro:Put_SAM_MeTrfase
InterPro:SAM-dependent_MTasesSUPFAM:SSF53335TMHMM:TMhelixUniParc:UPI0004EEC90BSEG:seg:
Description
BnaA10g02580D
Coordinates
chrLK031861:-:229256..233302
Molecular Weight (calculated)
70170.5 Da
IEP (calculated)
6.608
GRAVY (calculated)
-0.433
Length
620 amino acids
Sequence
(BLAST)
001: MMRGRSDGGQ KKRLIASLCA VALLLCFVYM YYGSSNQGAS AEYGRSLRKL GSSYLGGDDD DNKQDGSVTS EEDSLAVAKS FPVCDDRHSE IIPCLDRNFI
101: YQSRLKLDLS LMEHYERHCP PPERKFNCLI PPPSGYKVPI KWPKSRDEVW QANIPHTHLA KEKSDQNWMV VKGDKINFPG GGTHFHYGAD KYIASIANML
201: NFSNDVLNDE GRLRTVLDVG CGVASFGAYL LSSDIIAMSL APNDVHQNQI QFALERGIPA YLGVLGTKRL PYPSRSFELA HCSRCRIDWL QRDGILLLEL
301: DRVLRPGGYF AYSSPEAYAQ DEEDLRIWKE MSALVERMCW RIAAKRNQTV VWQKPLSNDC YLEREPGTQP PLCRSDADPD AVYGVSMEAC ITPYSKHDHK
401: TKGSGLAPWP ARMTSPPPRL ADFGYSTHMF EKDTELWKQQ VDSYWNLMSS KVKANTVRNI MDMKAHMGSF AAALRDKDVW VMNVVSPDGP NTLKLIYDRG
501: LIGTNHNWCE AFSTYPRTYD LLHAWTVFSD IRSKGCSAED LLIEMDRILR PTGFVIIRDK ESVVESIKKY MKALHWEVVA SEKVTTGSEL DQESEDGESN
601: VVFIAQKKLW LTSESLRDTE
Best Arabidopsis Sequence Match ( AT1G04430.2 )
(BLAST)
001: MMRGRSDGGL KKRLIASVCV VALFVCFLFM YYGSSSQGAS ALEYGRSLRK LGSSYLSGDD DNGDTKQDDS VANAEDSLVV AKSFPVCDDR HSEIIPCLDR
101: NFIYQMRLKL DLSLMEHYER HCPPPERRFN CLIPPPSGYK VPIKWPKSRD EVWKANIPHT HLAKEKSDQN WMVEKGEKIS FPGGGTHFHY GADKYIASIA
201: NMLNFSNDVL NDEGRLRTVL DVGCGVASFG AYLLASDIMT MSLAPNDVHQ NQIQFALERG IPAYLGVLGT KRLPYPSRSF EFAHCSRCRI DWLQRDGLLL
301: LELDRVLRPG GYFAYSSPEA YAQDEENLKI WKEMSALVER MCWRIAVKRN QTVVWQKPLS NDCYLEREPG TQPPLCRSDA DPDAVAGVSM EACITPYSKH
401: DHKTKGSGLA PWPARLTSSP PRLADFGYST DMFEKDTELW KQQVDSYWNL MSSKVKSNTV RNIMDMKAHM GSFAAALKDK DVWVMNVVSP DGPNTLKLIY
501: DRGLIGTNHN WCEAFSTYPR TYDLLHAWSI FSDIKSKGCS AEDLLIEMDR ILRPTGFVII RDKQSVVESI KKYLQALHWE TVASEKVNTS SELDQDSEDG
601: ENNVVFIVQK KLWLTSESLR DSE
Arabidopsis Description
Probable methyltransferase PMT8 [Source:UniProtKB/Swiss-Prot;Acc:Q940J9]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.