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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • cytosol 2
  • peroxisome 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, peroxisome, plasma membrane
BaCelLo:cytosol
MultiLoc:peroxisome
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d025373_P001 Maize cytosol, peroxisome, plasma membrane 83.63 84.97
Zm00001d003749_P001 Maize plasma membrane 87.67 84.27
TraesCS2A01G297900.1 Wheat endoplasmic reticulum, golgi, plasma membrane 68.16 73.08
TraesCS2B01G314100.1 Wheat plasma membrane 73.32 72.19
Os04t0417000-01 Rice cytosol, plastid, vacuole 73.09 71.65
TraesCS2D01G295900.1 Wheat plasma membrane 74.22 68.39
HORVU2Hr1G073840.3 Barley peroxisome, plasma membrane 72.2 67.79
OQU81543 Sorghum cytosol, peroxisome, plasma membrane 62.78 65.57
OQU75600 Sorghum cytosol 30.04 65.37
OQU81544 Sorghum peroxisome 65.7 65.11
TraesCS4D01G283600.1 Wheat plasma membrane 64.35 61.59
GSMUA_Achr6P35650_001 Banana plastid 60.54 59.6
GSMUA_Achr8P30390_001 Banana cytosol, endoplasmic reticulum, plasma membrane 55.83 59.43
CDX97484 Canola plasma membrane 16.37 53.68
Solyc11g068970.1.1 Tomato cytosol, peroxisome, plasma membrane 47.31 45.18
VIT_08s0105g00250.t01 Wine grape cytosol, golgi, plasma membrane 48.21 44.33
PGSC0003DMT400050498 Potato cytosol, peroxisome, plasma membrane 42.6 43.48
CDY52054 Canola cytosol, peroxisome, plasma membrane 42.15 43.32
VIT_06s0009g00450.t01 Wine grape plasma membrane 46.19 43.01
VIT_06s0080g00170.t01 Wine grape golgi, peroxisome, plasma membrane 47.09 41.5
VIT_06s0009g00480.t01 Wine grape golgi, peroxisome, plasma membrane 45.74 41.05
KRG96263 Soybean nucleus 44.17 40.79
KRH68006 Soybean golgi, peroxisome, plasma membrane 44.39 40.74
Solyc10g081890.1.1 Tomato nucleus 43.05 40.17
KRH25315 Soybean plasma membrane 43.27 40.12
KRH26685 Soybean plasma membrane 40.13 40.04
Bra038672.1-P Field mustard plasma membrane 43.95 40.0
KRH26686 Soybean golgi, peroxisome, plasma membrane 39.01 40.0
KRH30357 Soybean plasma membrane 43.05 39.75
CDY08504 Canola cytosol, golgi, plasma membrane 43.5 39.67
Bra034819.1-P Field mustard cytosol, golgi, plasma membrane 43.5 39.59
VIT_06s0080g00200.t01 Wine grape plasma membrane 25.11 39.58
CDY01048 Canola cytosol, golgi, plasma membrane 43.27 39.55
AT3G11680.2 Thale cress plasma membrane 42.83 38.98
CDX97483 Canola plasma membrane 41.26 38.9
PGSC0003DMT400047767 Potato plasma membrane 37.0 38.64
PGSC0003DMT400085620 Potato endoplasmic reticulum, plasma membrane, vacuole 26.46 38.06
PGSC0003DMT400072326 Potato golgi 34.53 37.84
CDY31146 Canola cytosol, golgi, plasma membrane 42.15 37.75
Bra030726.1-P Field mustard cytosol, golgi, plasma membrane 42.15 37.75
Solyc11g071350.1.1 Tomato nucleus 37.89 37.72
EES05741 Sorghum cytosol 42.15 37.6
AT1G08440.1 Thale cress cytosol, golgi, plasma membrane 42.15 37.52
CDX95060 Canola cytosol, golgi, plasma membrane 42.6 37.4
CDY31147 Canola plasma membrane 41.03 37.12
EES12682 Sorghum cytosol 41.03 37.12
Bra030725.1-P Field mustard plasma membrane 40.81 36.99
Bra018625.1-P Field mustard cytosol, golgi, plasma membrane 41.93 36.81
CDX93562 Canola cytosol, golgi, plasma membrane 41.93 36.81
Solyc06g074100.1.1 Tomato plasma membrane 38.34 36.62
CDX97489 Canola cytosol, golgi, plasma membrane 41.48 36.49
Bra034339.1-P Field mustard golgi 39.91 36.18
AT2G27240.1 Thale cress golgi 39.91 35.18
CDX77103 Canola golgi 40.13 35.03
CDY30563 Canola plasma membrane 40.13 35.03
AT1G08430.1 Thale cress golgi 38.56 34.89
CDX97487 Canola plasma membrane 29.6 34.2
PGSC0003DMT400089827 Potato endoplasmic reticulum, golgi 31.39 34.15
Solyc01g007080.2.1 Tomato peroxisome 36.32 34.11
EER89808 Sorghum cytosol, endoplasmic reticulum, peroxisome, plastid 42.6 28.23
CDX97485 Canola endoplasmic reticulum, extracellular, plasma membrane 19.96 27.73
EER90182 Sorghum mitochondrion 32.74 27.6
PGSC0003DMT400087967 Potato cytosol 39.91 26.77
PGSC0003DMT400086999 Potato cytosol, endoplasmic reticulum, plasma membrane 39.91 26.77
Solyc01g007090.1.1 Tomato cytosol 36.77 26.37
OQU85465 Sorghum golgi 29.15 25.1
EER89585 Sorghum plastid 29.6 21.43
CDX97488 Canola endoplasmic reticulum 0.0 0.0
Protein Annotations
EnsemblPlants:KXG26278EnsemblPlantsGene:SORBI_3006G075200GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0015743
GO:GO:0016020GO:GO:0016021InterPro:ALMTPANTHER:PTHR31086PANTHER:PTHR31086:SF8PFAM:PF11744
ProteinID:KXG26278ProteinID:KXG26278.1SEG:segTMHMM:TMhelixUniParc:UPI0003C65080UniProt:A0A1B6PKS9
MapMan:24.3.11:::::
Description
hypothetical protein
Coordinates
chr6:-:43808395..43811475
Molecular Weight (calculated)
49282.1 Da
IEP (calculated)
8.295
GRAVY (calculated)
0.229
Length
446 amino acids
Sequence
(BLAST)
001: MEIDQMESGA NGGGGGFRRR ERCWEVLCSA AGMLWAKVVG LAGKLARIAR DDPRRVAHSF KVGLALTLVS VLYYVRPLFN NWGVSTMWAV LTTVVVMEYT
101: VGGTLCKGLN RAFGTLVAGF IAVGAHKVAY LCGDKAEPVL LAIFVFLLSS AATFSRFIPE VKARYDYGVT IFILTFSLVA VSSYRVDELI RLAHQRFSTI
201: VVGVATCLCT TIFIFPVWAG EDLHKLAIGN LNKLADFFEG IESECFRENA TFENLEAKPF LQVYKSVLNS KATEDSLCNF AKWEPCHGKF IFRHPWSHYQ
301: KLGALSRQCA SSMEALASYV ITLTRTEYPE AHPELCLEVR TACRQMSLHS AKVLRELSAA MRMMTLPSQA NVHMAAAIKA ARGLRDELSE DADLVQAMHV
401: AVIASLLSDL VTKTKEITES VDILARLARF KNPENTQKDV AVNIVS
Best Arabidopsis Sequence Match ( AT1G08440.1 )
(BLAST)
001: MEKVREIVRE GRRVGKEDPR RVVHAFKVGL ALALVSSFYY YQPLYDNFGV NAMWAVMTVV VVFEFSVGAT LGKGLNRAVA TLVAGGLGIG AHHLASLSGP
101: TVEPILLAIF VFVLAALSTF VRFFPRVKAR YDYGVLIFIL TFALISVSGF REDEILDLAH KRLSTVIMGG VSCVLISIFV CPVWAGQDLH SLLASNFDTL
201: SHFLQEFGDE YFEATEDGDI KEVEKRRRNL ERYKSVLNSK SNEEALANFA KWEPRHGQFR FRHPWRQYLA VGALLRQSAY RIDALNSNIN SDMQIPMDIK
301: KKIEEPLRRM SSESGKSMKE VSISLKNMTI SSSFDIHVVN SQSACKTLST LLKSGILNDV EPLQMISLMT TVSLLIDIVN LTEKISESVH ELASAAKFKN
401: KKKPSKSNSG SIGQAMPNKS HDDDDHVVTI LGDVDTSNNV DQSQSHGEIS VDSCHHVTIK INDDDSIHDK NEDGDIHVHT NRVSCDHTNA SDLLDSGVKK
501: N
Arabidopsis Description
ALMT2Aluminum-activated malate transporter 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJE8]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.