Factsheet for Solyc03g115380.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus

Predictor Summary:

cytosol 3
golgi 4
extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, unclear
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

nucleus: 25464976
unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400087395	Potato	cytosol, golgi	97.5	97.5
Solyc02g088690.2.1	Tomato	nucleus	60.21	91.46
Solyc06g069550.1.1	Tomato	extracellular	88.96	88.96
GSMUA_Achr4P03270_001	Banana	cytosol	69.17	88.06
GSMUA_Achr4P14320_001	Banana	cytosol	74.58	87.32
Zm00001d034072_P001	Maize	extracellular	87.29	87.29
Os03t0757900-01	Rice	plasma membrane	87.29	87.29
TraesCS5D01G404300.1	Wheat	golgi	87.08	87.08
KXG37519	Sorghum	cytosol, extracellular	87.08	87.08
Os12t0443600-01	Rice	extracellular	87.08	87.08
TraesCS4A01G199200.1	Wheat	extracellular, golgi	86.88	86.88
TraesCS5A01G394900.1	Wheat	extracellular, golgi	86.88	86.88
TraesCS5B01G399800.1	Wheat	unclear	86.88	86.88
HORVU4Hr1G021270.1	Barley	extracellular, golgi	86.88	86.88
HORVU5Hr1G096370.1	Barley	extracellular, golgi	86.88	86.88
TraesCS4B01G116200.1	Wheat	extracellular, golgi	86.67	86.67
TraesCS4D01G113800.1	Wheat	extracellular, golgi	86.67	86.67
Os12t0443500-01	Rice	plasma membrane	86.67	86.67
Zm00001d013245_P001	Maize	plasma membrane	86.46	86.46
GSMUA_Achr3P30310_001	Banana	cytosol	68.12	86.28
TraesCS4D01G050600.2	Wheat	extracellular	86.25	86.25
GSMUA_Achr4P07270_001	Banana	extracellular, golgi	67.5	86.17
TraesCS4B01G050400.1	Wheat	extracellular	86.04	86.04
TraesCS4A01G264600.1	Wheat	extracellular	86.04	86.04
GSMUA_Achr6P11090_001	Banana	cytosol	66.04	85.91
GSMUA_Achr10P...	Banana	cytosol	67.29	85.9
EER95293	Sorghum	extracellular, vacuole	85.83	85.83
HORVU4Hr1G008270.1	Barley	extracellular, golgi	85.83	85.83
GSMUA_Achr11P...	Banana	cytosol	67.71	84.42
GSMUA_Achr3P18750_001	Banana	extracellular, golgi	63.12	84.17
GSMUA_Achr6P23920_001	Banana	cytosol	56.46	82.87
Os03t0425600-00	Rice	plasma membrane	82.08	81.91
Solyc02g067080.2.1	Tomato	extracellular	86.67	81.73
TraesCS4D01G075600.1	Wheat	cytosol, vacuole	81.25	81.08
TraesCS4B01G077100.1	Wheat	cytosol, vacuole	81.04	81.04
TraesCS4A01G237900.1	Wheat	cytosol, vacuole	80.62	80.46
Os03t0604200-01	Rice	plasma membrane	80.62	80.29
Zm00001d033188_P001	Maize	extracellular	80.21	80.04
GSMUA_Achr7P26580_001	Banana	cytosol	21.67	80.0
VIT_17s0000g06960.t01	Wine grape	endoplasmic reticulum, golgi	87.08	79.32
KXG38049	Sorghum	endoplasmic reticulum, extracellular	79.79	76.75
Solyc03g065350.1.1	Tomato	cytosol, extracellular, peroxisome	41.25	70.46
Os04t0581600-01	Rice	cytosol, mitochondrion, peroxisome	20.42	44.75
GSMUA_Achr4P10820_001	Banana	plasma membrane	64.79	41.86
Os03t0147150-00	Rice	plasma membrane	17.71	34.84

Protein Annotations

KEGG:00040+1.1.1.22	KEGG:00053+1.1.1.22	KEGG:00520+1.1.1.22	Gene3D:1.20.5.100	MapMan:3.13.3.1	Gene3D:3.40.50.720
InterPro:6-PGluconate_DH-like_C_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003979	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0006024	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016491	GO:GO:0016616
GO:GO:0051287	GO:GO:0055114	UniProt:K4BL40	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00984	PFAM:PF03720
PFAM:PF03721	PIRSF:PIRSF000124	PIRSF:PIRSF500133	PANTHER:PTHR11374	PANTHER:PTHR11374:SF30	SMART:SM00984
SUPFAM:SSF48179	SUPFAM:SSF51735	SUPFAM:SSF52413	EnsemblPlantsGene:Solyc03g115380.1	EnsemblPlants:Solyc03g115380.1.1	TIGRFAMs:TIGR03026
InterPro:UDP-Glc/GDP-Man	InterPro:UDP-Glc/GDP-Man_DH_C	InterPro:UDP-Glc/GDP-Man_DH_C_sf	InterPro:UDP-Glc/GDP-Man_DH_N	InterPro:UDP-Glc/GDP-Man_DH_dimer	InterPro:UDPglc_DH_euk
UniParc:UPI0002768957	:	:	:	:	:

Description

UDP-glucose 6-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:K4BL40]

Coordinates

chr3:+:65106653..65108095

Molecular Weight (calculated)

52783.6 Da

IEP (calculated)

6.770

GRAVY (calculated)

-0.043

Length

480 amino acids

Sequence
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPSIEVA VVDISVARIA AWNSDELPIY EPGLDDVVKQ CRGKNLFFST EVEKHVSEAD IIFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSKND KIVVEKSTVP VKTAEAIEKI LTHNCKGINF QILSNPEFLA EGTAIQDLFH PDRVLIGGRD TPEGQKAIQT LKKVYAHWVP
201: EDRIICTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GADVTQVSNA VGKDSRIGPK FLNASVGFGG SCFQKDILNL VYICECNGLP EVANYWKQVI
301: KVNDYQKSRF VNRMVSSMFN TVSGKKIAIL GFAFKKDTGD TRETPAIDVC KGLLGDNAHL SIYDPQVTQE QIQRDLSMEK FVWDHPTHLQ PVIPYGLKQV
401: NVVSGAHEAT KDAHGLCILT EWDEFKTLDF KRIYDNMQKP AFVFDGRNVV DASKLREIGF IVYTIGKPLD AWLKDMPAVA

Best Arabidopsis Sequence Match ( AT3G29360.2 )
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPDVEVA VVDISVPRIN AWNSDTLPIY EPGLDDVVKQ CRGKNLFFST DVEKHVREAD IVFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSVSD KIVVEKSTVP VKTAEAIEKI LTHNSKGIKF QILSNPEFLA EGTAIKDLFN PDRVLIGGRE TPEGFKAVQT LKNVYAHWVP
201: EGQIITTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GADVTQVSYA VGTDSRIGPK FLNSSVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI
301: KINDYQKSRF VNRVVSSMFN SVSNKKIAVL GFAFKKDTGD TRETPAIDVC KGLLEDKARL SIYDPQVTED QIQRDLSMNK FDWDHPLHLQ PMSPTTVKQV
401: TVTWDAYEAT KDAHGICIMT EWDEFKNLDF QKIFDNMQKP AFVFDGRNIM NLQKLREIGF IVYSIGKPLD DWLKDMPAVA

Arabidopsis Description

UGD2UDP-glucose 6-dehydrogenase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIA8]
SUBAcon: [vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.