Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G404300.1 | Wheat | golgi | 99.38 | 99.38 |
| TraesCS5B01G399800.1 | Wheat | unclear | 99.17 | 99.17 |
| HORVU5Hr1G096370.1 | Barley | extracellular, golgi | 97.08 | 97.08 |
| TraesCS4A01G264600.1 | Wheat | extracellular | 95.42 | 95.42 |
| Solyc02g088690.2.1 | Tomato | nucleus | 62.29 | 94.62 |
| Os12t0443500-01 | Rice | plasma membrane | 94.38 | 94.38 |
| KXG37519 | Sorghum | cytosol, extracellular | 94.38 | 94.38 |
| Zm00001d034072_P001 | Maize | extracellular | 94.17 | 94.17 |
| Zm00001d013245_P001 | Maize | plasma membrane | 93.75 | 93.75 |
| TraesCS4A01G199200.1 | Wheat | extracellular, golgi | 90.83 | 90.83 |
| PGSC0003DMT400003666 | Potato | extracellular, vacuole | 90.83 | 90.64 |
| Bra008695.1-P | Field mustard | extracellular, golgi | 90.21 | 90.21 |
| CDY26425 | Canola | extracellular, golgi | 90.21 | 90.21 |
| CDX69521 | Canola | cytosol | 69.17 | 89.97 |
| Bra006303.1-P | Field mustard | extracellular, vacuole | 89.58 | 89.58 |
| AT5G15490.1 | Thale cress | extracellular, vacuole | 89.58 | 89.58 |
| KRH44990 | Soybean | nucleus | 89.17 | 89.17 |
| KRH01262 | Soybean | nucleus | 88.96 | 88.96 |
| PGSC0003DMT400064713 | Potato | cytosol | 85.83 | 88.79 |
| KRG93627 | Soybean | endoplasmic reticulum | 88.75 | 88.75 |
| KRH70872 | Soybean | endoplasmic reticulum | 88.54 | 88.54 |
| KRH18404 | Soybean | endoplasmic reticulum | 88.54 | 88.54 |
| KRH75016 | Soybean | endoplasmic reticulum | 88.33 | 88.33 |
| AT3G29360.1 | Thale cress | cytosol, vacuole | 88.33 | 88.33 |
| PGSC0003DMT400087395 | Potato | cytosol, golgi | 87.92 | 87.92 |
| Bra026264.1-P | Field mustard | extracellular, vacuole | 45.21 | 87.85 |
| CDX67427 | Canola | cytosol, vacuole | 87.29 | 87.29 |
| Bra028430.1-P | Field mustard | cytosol, vacuole | 87.29 | 87.29 |
| CDX74475 | Canola | extracellular | 46.88 | 87.21 |
| CDY37001 | Canola | cytosol, vacuole | 87.08 | 87.08 |
| AT5G39320.1 | Thale cress | extracellular | 87.08 | 87.08 |
| Solyc03g115380.1.1 | Tomato | nucleus, unclear | 86.88 | 86.88 |
| Bra028234.1-P | Field mustard | extracellular, vacuole | 86.67 | 86.67 |
| Solyc06g069550.1.1 | Tomato | extracellular | 86.46 | 86.46 |
| PGSC0003DMT400083187 | Potato | extracellular | 85.83 | 85.83 |
| Solyc02g067080.2.1 | Tomato | extracellular | 89.38 | 84.28 |
| PGSC0003DMT400069038 | Potato | cytosol | 31.88 | 84.07 |
| AT1G26570.1 | Thale cress | cytosol, extracellular | 83.75 | 83.58 |
| TraesCS4A01G237900.1 | Wheat | cytosol, vacuole | 82.92 | 82.74 |
| AT3G01010.1 | Thale cress | cytosol | 27.08 | 82.28 |
| Bra024708.1-P | Field mustard | cytosol, extracellular | 81.88 | 81.7 |
| CDY16166 | Canola | cytosol | 81.46 | 81.29 |
| KRH03109 | Soybean | cytosol | 78.75 | 78.91 |
| KRH56847 | Soybean | cytosol | 78.33 | 78.66 |
| KRG89491 | Soybean | cytosol | 47.92 | 77.97 |
| Bra025395.1-P | Field mustard | cytosol | 15.42 | 77.89 |
| CDX86369 | Canola | cytosol | 14.79 | 77.17 |
| CDX70614 | Canola | cytosol, mitochondrion, peroxisome, plastid | 89.79 | 77.1 |
| CDX90989 | Canola | cytosol, golgi | 87.71 | 76.82 |
| CDX78633 | Canola | cytosol | 89.79 | 76.15 |
| KRH15845 | Soybean | cytosol | 52.29 | 75.83 |
| Solyc03g065350.1.1 | Tomato | cytosol, extracellular, peroxisome | 42.92 | 73.31 |
| Bra023520.1-P | Field mustard | golgi | 87.71 | 67.79 |
| CDX85269 | Canola | cytosol | 29.79 | 65.0 |
| CDX85549 | Canola | cytosol | 87.92 | 62.89 |
| Bra030352.1-P | Field mustard | extracellular | 7.08 | 47.22 |
| CDY15951 | Canola | extracellular | 7.08 | 47.22 |
Protein Annotations
| KEGG:00040+1.1.1.22 | KEGG:00053+1.1.1.22 | KEGG:00520+1.1.1.22 | Gene3D:1.20.5.100 | MapMan:3.13.3.1 | Gene3D:3.40.50.720 |
| InterPro:6-PGluconate_DH-like_C_sf | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003979 | GO:GO:0005488 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016616 | GO:GO:0051287 | GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf |
| PFAM:PF00984 | PFAM:PF03720 | PFAM:PF03721 | PIRSF:PIRSF000124 | PIRSF:PIRSF500133 | PANTHER:PTHR11374 |
| PANTHER:PTHR11374:SF30 | SMART:SM00984 | SUPFAM:SSF48179 | SUPFAM:SSF51735 | SUPFAM:SSF52413 | TIGRFAMs:TIGR03026 |
| EnsemblPlantsGene:TraesCS5A01G394900 | EnsemblPlants:TraesCS5A01G394900.1 | InterPro:UDP-Glc/GDP-Man | InterPro:UDP-Glc/GDP-Man_DH_C | InterPro:UDP-Glc/GDP-Man_DH_C_sf | InterPro:UDP-Glc/GDP-Man_DH_N |
| InterPro:UDP-Glc/GDP-Man_DH_dimer | InterPro:UDPglc_DH_euk | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:590540043..590541485
Molecular Weight (calculated)
52596.3 Da
IEP (calculated)
6.275
GRAVY (calculated)
-0.050
Length
480 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKICCIGAG YVGGPTMAVI AIKCPAIEVV VVDISKPRID AWNSDTLPIY EPGLDDVVKA CRGKNLFFST DVEKHVAEAD IIFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSKSD KIVVEKSTVP VKTAEAIEKI LTHNSKGINY QILSNPEFLA EGTAIEDLFK PDRVLIGGRE TPGGQKAVQA LKEVYAHWVP
201: EANIITTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GANVSEVSYA IGKDSRIGPK FLNASVGFGG SCFQKDILNL VYICECNGLP EVANYWKQVI
301: KINDYQKSRF VNRVVSSMFN TVSGKKIAVL GFAFKKDTGD TRETPAIDVC KGLVGDKAQV SIYDPQVTEE QIQRDLAMNK FDWDHPMHLQ PTSPTAVKQV
401: SVVWDAYEAC KGAHGVCILT EWDEFKKLDY QKIFDNMQKP AFVFDGRNVV DAEKLREMGF IVYSIGKPLD GWLKDMPAVA
101: ADLTYWESAA RMIADVSKSD KIVVEKSTVP VKTAEAIEKI LTHNSKGINY QILSNPEFLA EGTAIEDLFK PDRVLIGGRE TPGGQKAVQA LKEVYAHWVP
201: EANIITTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GANVSEVSYA IGKDSRIGPK FLNASVGFGG SCFQKDILNL VYICECNGLP EVANYWKQVI
301: KINDYQKSRF VNRVVSSMFN TVSGKKIAVL GFAFKKDTGD TRETPAIDVC KGLVGDKAQV SIYDPQVTEE QIQRDLAMNK FDWDHPMHLQ PTSPTAVKQV
401: SVVWDAYEAC KGAHGVCILT EWDEFKKLDY QKIFDNMQKP AFVFDGRNVV DAEKLREMGF IVYSIGKPLD GWLKDMPAVA
001: MVKICCIGAG YVGGPTMAVI ALKCPSVEVA VVDISVPRIN AWNSDQLPIY EPGLDDVVKQ CRGKNLFFST DVEKHVREAD IVFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSVSD KIVVEKSTVP VKTAEAIEKI LTHNSKGIKF QILSNPEFLA EGTAIEDLFM PDRVLIGGRE TTEGFAAVKA LKDIYAQWVP
201: EERILTTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GANVSEVSYA VGKDSRIGPK FLNSSVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI
301: KINDYQKTRF VNRIVSSMFN TVSNKKIAVL GFAFKKDTGD TRETPAIDVC KGLLGDKARL SIYDPQVTEE QIQRDLTMNK FDWDHPLHLQ PMSPTTVKQV
401: SVAWDAYTAT KDAHGICILT EWDEFKKLDF QRIFENMQKP AFVFDGRNVV DADKLREIGF IVYSIGKPLD QWLKDMPALA
101: ADLTYWESAA RMIADVSVSD KIVVEKSTVP VKTAEAIEKI LTHNSKGIKF QILSNPEFLA EGTAIEDLFM PDRVLIGGRE TTEGFAAVKA LKDIYAQWVP
201: EERILTTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GANVSEVSYA VGKDSRIGPK FLNSSVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI
301: KINDYQKTRF VNRIVSSMFN TVSNKKIAVL GFAFKKDTGD TRETPAIDVC KGLLGDKARL SIYDPQVTEE QIQRDLTMNK FDWDHPLHLQ PMSPTTVKQV
401: SVAWDAYTAT KDAHGICILT EWDEFKKLDF QRIFENMQKP AFVFDGRNVV DADKLREIGF IVYSIGKPLD QWLKDMPALA
Arabidopsis Description
UGD3UDP-glucose 6-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UJW9]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.