Factsheet for Bra028234.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

cytosol 2
golgi 4
extracellular 4
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra024708.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39320.1	Bra024708.1-P	AT1G26570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028430.1-P	Field mustard	cytosol, vacuole	98.96	98.96
CDX74475	Canola	extracellular	52.5	97.67
AT5G39320.1	Thale cress	extracellular	97.5	97.5
Bra026264.1-P	Field mustard	extracellular, vacuole	50.0	97.17
Solyc02g088690.2.1	Tomato	nucleus	59.38	90.19
PGSC0003DMT400003666	Potato	extracellular, vacuole	89.58	89.4
Bra008695.1-P	Field mustard	extracellular, golgi	89.38	89.38
PGSC0003DMT400064713	Potato	cytosol	86.25	89.22
KRH44990	Soybean	nucleus	89.17	89.17
Bra006303.1-P	Field mustard	extracellular, vacuole	88.96	88.96
KRH01262	Soybean	nucleus	88.54	88.54
KRG93627	Soybean	endoplasmic reticulum	88.12	88.12
KRH18404	Soybean	endoplasmic reticulum	87.92	87.92
HORVU4Hr1G008270.1	Barley	extracellular, golgi	87.71	87.71
GSMUA_Achr4P03270_001	Banana	cytosol	68.54	87.27
TraesCS4B01G050400.1	Wheat	extracellular	86.88	86.88
TraesCS4D01G050600.2	Wheat	extracellular	86.88	86.88
TraesCS5D01G404300.1	Wheat	golgi	86.88	86.88
Os12t0443500-01	Rice	plasma membrane	86.88	86.88
KXG37519	Sorghum	cytosol, extracellular	86.88	86.88
Zm00001d034072_P001	Maize	extracellular	86.88	86.88
HORVU5Hr1G096370.1	Barley	extracellular, golgi	86.88	86.88
GSMUA_Achr4P14320_001	Banana	cytosol	74.17	86.83
GSMUA_Achr3P30310_001	Banana	cytosol	68.54	86.81
Os12t0443600-01	Rice	extracellular	86.67	86.67
TraesCS5B01G399800.1	Wheat	unclear	86.67	86.67
TraesCS5A01G394900.1	Wheat	extracellular, golgi	86.67	86.67
Os03t0757900-01	Rice	plasma membrane	86.67	86.67
Zm00001d013245_P001	Maize	plasma membrane	86.46	86.46
TraesCS4A01G264600.1	Wheat	extracellular	86.46	86.46
HORVU4Hr1G021270.1	Barley	extracellular, golgi	86.04	86.04
TraesCS4A01G199200.1	Wheat	extracellular, golgi	86.04	86.04
TraesCS4D01G113800.1	Wheat	extracellular, golgi	85.83	85.83
TraesCS4B01G116200.1	Wheat	extracellular, golgi	85.83	85.83
GSMUA_Achr4P07270_001	Banana	extracellular, golgi	67.08	85.64
GSMUA_Achr6P11090_001	Banana	cytosol	65.83	85.64
EER95293	Sorghum	extracellular, vacuole	85.62	85.62
GSMUA_Achr10P...	Banana	cytosol	66.04	84.31
Solyc02g067080.2.1	Tomato	extracellular	89.17	84.09
PGSC0003DMT400069038	Potato	cytosol	31.67	83.52
GSMUA_Achr6P23920_001	Banana	cytosol	56.88	83.49
GSMUA_Achr11P...	Banana	cytosol	66.88	83.38
Os03t0425600-00	Rice	plasma membrane	82.5	82.33
GSMUA_Achr7P26580_001	Banana	cytosol	22.29	82.31
GSMUA_Achr3P18750_001	Banana	extracellular, golgi	61.67	82.22
Os03t0604200-01	Rice	plasma membrane	81.67	81.33
Bra024708.1-P	Field mustard	cytosol, extracellular	81.46	81.29
TraesCS4B01G077100.1	Wheat	cytosol, vacuole	80.21	80.21
TraesCS4A01G237900.1	Wheat	cytosol, vacuole	80.21	80.04
TraesCS4D01G075600.1	Wheat	cytosol, vacuole	80.21	80.04
Zm00001d033188_P001	Maize	extracellular	80.21	80.04
Bra025395.1-P	Field mustard	cytosol	15.83	80.0
KXG38049	Sorghum	endoplasmic reticulum, extracellular	79.79	76.75
Solyc03g065350.1.1	Tomato	cytosol, extracellular, peroxisome	41.67	71.17
Bra023520.1-P	Field mustard	golgi	87.71	67.79
Bra030352.1-P	Field mustard	extracellular	8.33	55.56
Os04t0581600-01	Rice	cytosol, mitochondrion, peroxisome	19.79	43.38
GSMUA_Achr4P10820_001	Banana	plasma membrane	65.83	42.53
Os03t0147150-00	Rice	plasma membrane	17.08	33.61

Protein Annotations

KEGG:00040+1.1.1.22	KEGG:00053+1.1.1.22	KEGG:00520+1.1.1.22	Gene3D:1.20.5.100	MapMan:3.13.3.1	Gene3D:3.40.50.720
InterPro:6-PGluconate_DH-like_C_sf	EnsemblPlantsGene:Bra028234	EnsemblPlants:Bra028234.1	EnsemblPlants:Bra028234.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003979	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	UniProt:M4EHG9	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00984
PFAM:PF03720	PFAM:PF03721	PIRSF:PIRSF000124	PIRSF:PIRSF500133	PANTHER:PTHR11374	PANTHER:PTHR11374:SF30
SMART:SM00984	SUPFAM:SSF48179	SUPFAM:SSF51735	SUPFAM:SSF52413	TIGRFAMs:TIGR03026	InterPro:UDP-Glc/GDP-Man
InterPro:UDP-Glc/GDP-Man_DH_C	InterPro:UDP-Glc/GDP-Man_DH_C_sf	InterPro:UDP-Glc/GDP-Man_DH_N	InterPro:UDP-Glc/GDP-Man_DH_dimer	InterPro:UDPglc_DH_euk	UniParc:UPI00025447B4

Description

AT5G39320 (E=2e-276) | UDP-glucose 6-dehydrogenase, putative

Coordinates

chrA04:+:6929902..6931344

Molecular Weight (calculated)

53087.9 Da

IEP (calculated)

6.024

GRAVY (calculated)

-0.049

Length

480 amino acids

Sequence
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPHVEVA VVDISVPRIN AWNSDQLPIY EPGLEDIVKQ CRGKNLFFST DVEKHVREAD IVFVSVNTPT KTTGLGAGKA
101: ADLTYWESAA RMIADVSVSD KIVVEKSTVP VKTAEAIEKI LMHNSKGIKF QILSNPEFLA EGTAISDLFN PDRVLIGGRE TPEGFKAVQT LKEVYANWVP
201: EGQIITTNLW SAELSKLAAN AFLAQRISSV NAMSALCEST GADVTQVAYA VGTDSRIGPK FLNASVGFGG SCFQKDILNL VYICQCNGLP EVAEYWKQVI
301: KINDYQKNRF VNRIVSSMFN TVSNKKVAIL GFAFKKDTGD TRETPAIDVC KGLLGDKAQI SIYDPQVTEE QIQRDLSMKK FDWDHPLHLQ PMSPTTVKQV
401: SVKWDAYEAT KDAHAVCVLT EWDEFKSLDY QKIFDNMQKP AFIFDGRNVL NVDKLREIGF IVYSIGKPLD AWVKDMPAFV

Best Arabidopsis Sequence Match ( AT5G39320.1 )
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPDIEVA VVDISVPRIN AWNSDQLPIY EPGLDDIVKQ CRGKNLFFST DVEKHVREAD IVFVSVNTPT KTTGLGAGKA
101: ADLTYWESAA RMIADVSVSD KIVVEKSTVP VKTAEAIEKI LMHNSKGIKF QILSNPEFLA EGTAIADLFN PDRVLIGGRE TPEGFKAVQT LKEVYANWVP
201: EGQIITTNLW SAELSKLAAN AFLAQRISSV NAMSALCEST GADVTQVSYA VGTDSRIGSK FLNASVGFGG SCFQKDILNL VYICQCNGLP EVAEYWKQVI
301: KINDYQKNRF VNRIVSSMFN TVSNKKVAIL GFAFKKDTGD TRETPAIDVC KGLLGDKAQI SIYDPQVTEE QIQRDLSMKK FDWDHPLHLQ PMSPTTVKQV
401: SVTWDAYEAT KDAHAVCVLT EWDEFKSLDY QKIFDNMQKP AFIFDGRNIM NVNKLREIGF IVYSIGKPLD PWLKDMPAFV

Arabidopsis Description

UGD4UDP-glucose 6-dehydrogenase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FM01]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.