Factsheet for GSMUA_Achr4P10820_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
golgi 4
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
nucleus 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr3P18750_001
GSMUA_Achr3P30310_001
GSMUA_Achr4P03270_001
GSMUA_Achr4P07270_001
GSMUA_Achr4P10820_001
GSMUA_Achr4P14320_001
GSMUA_Achr6P11090_001
GSMUA_Achr6P23920_001
GSMUA_Achr7P26580_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39320.1	GSMUA_Achr10P...	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr11P...	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr3P18750_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr3P30310_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr4P03270_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr4P07270_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr4P10820_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr4P14320_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr6P11090_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr6P23920_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr7P26580_001	AT1G26570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P07270_001	Banana	extracellular, golgi	46.03	90.96
GSMUA_Achr7P26580_001	Banana	cytosol	15.34	87.69
GSMUA_Achr6P23920_001	Banana	cytosol	37.42	85.02
GSMUA_Achr3P18750_001	Banana	extracellular, golgi	40.78	84.17
Bra025395.1-P	Field mustard	cytosol	10.23	80.0
GSMUA_Achr4P03270_001	Banana	cytosol	40.11	79.05
CDX86369	Canola	cytosol	9.69	78.26
GSMUA_Achr3P30310_001	Banana	cytosol	39.43	77.31
GSMUA_Achr6P11090_001	Banana	cytosol	36.61	73.71
GSMUA_Achr10P...	Banana	cytosol	36.61	72.34
PGSC0003DMT400069038	Potato	cytosol	17.23	70.33
GSMUA_Achr11P...	Banana	cytosol	35.53	68.57
EER95293	Sorghum	extracellular, vacuole	44.28	68.54
GSMUA_Achr4P14320_001	Banana	cytosol	37.55	68.05
TraesCS4B01G116200.1	Wheat	extracellular, golgi	43.07	66.67
HORVU4Hr1G021270.1	Barley	extracellular, golgi	43.07	66.67
Bra008695.1-P	Field mustard	extracellular, golgi	43.07	66.67
KRG93627	Soybean	endoplasmic reticulum	43.07	66.67
TraesCS4A01G199200.1	Wheat	extracellular, golgi	43.07	66.67
KRH18404	Soybean	endoplasmic reticulum	42.93	66.46
CDY37001	Canola	cytosol, vacuole	42.93	66.46
TraesCS4D01G113800.1	Wheat	extracellular, golgi	42.93	66.46
CDY26425	Canola	extracellular, golgi	42.93	66.46
CDX67427	Canola	cytosol, vacuole	42.93	66.46
Bra028430.1-P	Field mustard	cytosol, vacuole	42.93	66.46
KRH44990	Soybean	nucleus	42.8	66.25
Bra006303.1-P	Field mustard	extracellular, vacuole	42.8	66.25
AT5G39320.1	Thale cress	extracellular	42.66	66.04
KRH01262	Soybean	nucleus	42.66	66.04
AT5G15490.1	Thale cress	extracellular, vacuole	42.66	66.04
PGSC0003DMT400003666	Potato	extracellular, vacuole	42.66	65.9
Bra028234.1-P	Field mustard	extracellular, vacuole	42.53	65.83
Os03t0425600-00	Rice	plasma membrane	42.53	65.7
AT3G29360.1	Thale cress	cytosol, vacuole	42.4	65.62
PGSC0003DMT400087395	Potato	cytosol, golgi	42.26	65.42
PGSC0003DMT400064713	Potato	cytosol	40.78	65.3
KRH70872	Soybean	endoplasmic reticulum	42.13	65.21
Solyc02g088690.2.1	Tomato	nucleus	27.73	65.19
KRH75016	Soybean	endoplasmic reticulum	41.99	65.0
Solyc03g115380.1.1	Tomato	nucleus, unclear	41.86	64.79
AT3G01010.1	Thale cress	cytosol	13.73	64.56
Solyc06g069550.1.1	Tomato	extracellular	41.45	64.17
PGSC0003DMT400083187	Potato	extracellular	41.32	63.96
Solyc02g067080.2.1	Tomato	extracellular	43.07	62.87
AT1G26570.1	Thale cress	cytosol, extracellular	40.11	61.95
Bra024708.1-P	Field mustard	cytosol, extracellular	39.43	60.91
CDY16166	Canola	cytosol	39.3	60.71
KRH56847	Soybean	cytosol	37.95	59.0
CDX69521	Canola	cytosol	29.21	58.81
KRH03109	Soybean	cytosol	37.82	58.66
CDX90989	Canola	cytosol, golgi	42.26	57.3
CDX70614	Canola	cytosol, mitochondrion, peroxisome, plastid	42.93	57.07
CDX74475	Canola	extracellular	19.78	56.98
CDX78633	Canola	cytosol	42.93	56.36
Bra026264.1-P	Field mustard	extracellular, vacuole	18.71	56.28
CDX85269	Canola	cytosol	16.29	55.0
Bra030352.1-P	Field mustard	extracellular	5.25	54.17
CDY15951	Canola	extracellular	5.25	54.17
KRG89491	Soybean	cytosol	20.86	52.54
Bra023520.1-P	Field mustard	golgi	43.2	51.69
KRH15845	Soybean	cytosol	22.34	50.15
Solyc03g065350.1.1	Tomato	cytosol, extracellular, peroxisome	18.84	49.82
CDX85549	Canola	cytosol	43.07	47.69

Protein Annotations

Gene3D:1.20.5.100	MapMan:3.13.3.1	Gene3D:3.30.70.330	Gene3D:3.40.50.720	InterPro:6-PGluconate_DH-like_C_sf	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr4G10820_001
EnsemblPlants:GSMUA_Achr4P10820_001	EnsemblPlants:GSMUA_Achr4T10820_001	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0SMU9	InterPro:NAD(P)-bd_dom_sf
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00984	PFAM:PF03720	PFAM:PF03721	PFscan:PS50102	PANTHER:PTHR11374
PANTHER:PTHR11374:SF30	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM00984	SUPFAM:SSF48179
SUPFAM:SSF51735	SUPFAM:SSF52413	SUPFAM:SSF54928	TIGRFAMs:TIGR03026	InterPro:UDP-Glc/GDP-Man	InterPro:UDP-Glc/GDP-Man_DH_C
InterPro:UDP-Glc/GDP-Man_DH_C_sf	InterPro:UDP-Glc/GDP-Man_DH_N	InterPro:UDP-Glc/GDP-Man_DH_dimer	UniParc:UPI000296DF84	SEG:seg	:

Description

UDP-glucose 6-dehydrogenase [Source:GMGC_GENE;Acc:GSMUA_Achr4G10820_001]

Coordinates

chr4:+:7838672..7845541

Molecular Weight (calculated)

81412.1 Da

IEP (calculated)

5.101

GRAVY (calculated)

-0.167

Length

743 amino acids

Sequence
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPNIEVA VVDISVTRIA AWNSDQLPIY EPGLEDVVKQ CRGRNLFFST DVEKHVCEAD IIFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSKSD KIILSNPEFL AEALKEVYAN WVPEDRIITT NLWSAELSKL AANAFLAQRI SSVNAISALC EATGANVAEV AYAVGKDSRI
201: GPKFLNASVG FGGSCFQKDI LNLVYICACN GLPEVANYWK QVIKINDYQK SRFVNRVVSS MFNTVAGKKI AVLGFAFKKD TGDTRETPAV DVCKGLLGDK
301: AKISIYDPQP MSPTAVKEVT VTWDAYEAAT GAHAVCILTE WDEFKRLDYS KIYENMQKPA FIFDGRNVVD PEKLREMGFI VYSIGKPLDP WLKDMPAAEE
401: EPNISNDPWT RSSRNPPNSD LPLLGCFYCA GGLDRTPPSF SPALSSLLLP TNSISRSRKM SAKTVKISNI CLSASQRDIQ EFFSFSGDID YVEMQSESED
501: TQLAYVTFRD SQGAETAMLL TGATIVDRSV NITPAENYKL PPEAYRHMLD GNSSPTNEAV KKAEDVVSGM LAKGFVLSKD ALQRAKAFDE QHQLLSTASA
601: TVVSLDQRIG LSEKLSTGMA MVSGKVREVD ERYQVTEITR SALASAEQTA TNAGSAIMSN RYVSTGASWL SSALGKVMKA AEDVSILTKE KVEKAEEERK
701: QLFWDERRGM VSEYAKVHLD EPLSNEPPTV PVYSMDEQKL RIA

Best Arabidopsis Sequence Match ( AT5G15490.1 )
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPSVEVA VVDISVPRIN AWNSDQLPIY EPGLDDVVKQ CRGKNLFFST DVEKHVREAD IVFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSVSD KIVVEKSTVP VKTAEAIEKI LTHNSKGIKF QILSNPEFLA EGTAIEDLFM PDRVLIGGRE TTEGFAAVKA LKDIYAQWVP
201: EERILTTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GANVSEVSYA VGKDSRIGPK FLNSSVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI
301: KINDYQKTRF VNRIVSSMFN TVSNKKIAVL GFAFKKDTGD TRETPAIDVC KGLLGDKARL SIYDPQVTEE QIQRDLTMNK FDWDHPLHLQ PMSPTTVKQV
401: SVAWDAYTAT KDAHGICILT EWDEFKKLDF QRIFENMQKP AFVFDGRNVV DADKLREIGF IVYSIGKPLD QWLKDMPALA

Arabidopsis Description

UGD3UDP-glucose 6-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UJW9]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.