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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 3
  • golgi 5
  • extracellular 5
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 4
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, plastid, secretory
BaCelLo:cytosol
EpiLoc:golgi
iPSORT:secretory
MultiLoc:cytosol
Plant-mPloc:plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:extracellular
 plasma membrane: 18260611
extracellular: 24083427
plasma membrane: 27800704
plasma membrane: 28056797
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 28056797 doi
N Yang, T Wang
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
msms PMID: 24083427 doi
T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu
Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os03t0147150-00
Os03t0425600-00
Os03t0604200-01
Os03t0757900-01
Os04t0581600-01
Os12t0443500-01
Os12t0443600-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G39320.1 Os03t0147150-00 AT1G26570.1 21798944
AT5G39320.1 Os03t0425600-00 AT1G26570.1 21798944
AT5G39320.1 Os03t0604200-01 AT1G26570.1 21798944
AT5G39320.1 Os03t0757900-01 AT1G26570.1 21798944
AT5G39320.1 Os04t0581600-01 AT1G26570.1 21798944
AT5G39320.1 Os12t0443500-01 AT1G26570.1 21798944
AT5G39320.1 Os12t0443600-01 AT1G26570.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr4P14320_001 Banana cytosol 75.47 88.54
GSMUA_Achr4P03270_001 Banana cytosol 69.02 88.06
GSMUA_Achr4P07270_001 Banana extracellular, golgi 68.4 87.5
TraesCS4A01G199200.1 Wheat extracellular, golgi 86.9 87.08
EER95293 Sorghum extracellular, vacuole 86.9 87.08
HORVU4Hr1G021270.1 Barley extracellular, golgi 86.9 87.08
TraesCS4B01G116200.1 Wheat extracellular, golgi 86.9 87.08
Os03t0757900-01 Rice plasma membrane 86.9 87.08
GSMUA_Achr10P... Banana cytosol 67.98 86.97
Os12t0443500-01 Rice plasma membrane 86.69 86.88
TraesCS4D01G113800.1 Wheat extracellular, golgi 86.69 86.88
GSMUA_Achr11P... Banana cytosol 69.23 86.49
GSMUA_Achr6P11090_001 Banana cytosol 66.32 86.45
Solyc02g088690.2.1 Tomato nucleus 56.76 86.39
CDY26425 Canola extracellular, golgi 85.86 86.04
Os12t0443600-01 Rice extracellular 85.86 86.04
Bra006303.1-P Field mustard extracellular, vacuole 85.86 86.04
Bra008695.1-P Field mustard extracellular, golgi 85.86 86.04
GSMUA_Achr3P30310_001 Banana cytosol 67.78 86.02
AT5G15490.1 Thale cress extracellular, vacuole 85.65 85.83
CDX69521 Canola cytosol 65.7 85.64
GSMUA_Achr7P26580_001 Banana cytosol 23.08 85.38
GSMUA_Achr6P23920_001 Banana cytosol 58.0 85.32
PGSC0003DMT400064713 Potato cytosol 81.91 84.91
PGSC0003DMT400003666 Potato extracellular, vacuole 84.82 84.82
GSMUA_Achr3P18750_001 Banana extracellular, golgi 63.2 84.44
Os03t0604200-01 Rice plasma membrane 84.2 84.02
KRH18404 Soybean endoplasmic reticulum 83.78 83.96
KRH01262 Soybean nucleus 83.78 83.96
KRG93627 Soybean endoplasmic reticulum 83.78 83.96
KRH44990 Soybean nucleus 83.58 83.75
AT3G29360.1 Thale cress cytosol, vacuole 83.37 83.54
KRH70872 Soybean endoplasmic reticulum 83.16 83.33
KRH75016 Soybean endoplasmic reticulum 82.95 83.12
CDY37001 Canola cytosol, vacuole 82.54 82.71
Bra028430.1-P Field mustard cytosol, vacuole 82.54 82.71
CDX67427 Canola cytosol, vacuole 82.54 82.71
PGSC0003DMT400087395 Potato cytosol, golgi 82.54 82.71
Bra028234.1-P Field mustard extracellular, vacuole 82.33 82.5
AT5G39320.1 Thale cress extracellular 82.12 82.29
Solyc03g115380.1.1 Tomato nucleus, unclear 81.91 82.08
PGSC0003DMT400069038 Potato cytosol 30.98 81.87
CDX74475 Canola extracellular 43.87 81.78
Bra026264.1-P Field mustard extracellular, vacuole 41.79 81.38
Solyc06g069550.1.1 Tomato extracellular 80.25 80.42
Solyc02g067080.2.1 Tomato extracellular 85.03 80.35
PGSC0003DMT400083187 Potato extracellular 80.04 80.21
Bra024708.1-P Field mustard cytosol, extracellular 79.83 79.83
AT1G26570.1 Thale cress cytosol, extracellular 79.83 79.83
CDY16166 Canola cytosol 79.42 79.42
AT3G01010.1 Thale cress cytosol 25.99 79.11
KRH03109 Soybean cytosol 74.43 74.74
KRH56847 Soybean cytosol 74.22 74.69
KRG89491 Soybean cytosol 45.53 74.24
CDX70614 Canola cytosol, mitochondrion, peroxisome, plastid 85.86 73.88
CDX90989 Canola cytosol, golgi 83.99 73.72
Bra025395.1-P Field mustard cytosol 14.55 73.68
CDX78633 Canola cytosol 86.07 73.14
CDX86369 Canola cytosol 13.93 72.83
KRH15845 Soybean cytosol 49.48 71.9
Solyc03g065350.1.1 Tomato cytosol, extracellular, peroxisome 40.33 69.04
Bra023520.1-P Field mustard golgi 83.99 65.06
CDX85269 Canola cytosol 29.11 63.64
CDX85549 Canola cytosol 84.2 60.36
CDY15951 Canola extracellular 7.28 48.61
Bra030352.1-P Field mustard extracellular 7.28 48.61
Os04t0581600-01 Rice cytosol, mitochondrion, peroxisome 21.0 46.12
GSMUA_Achr4P10820_001 Banana plasma membrane 65.7 42.53
Os03t0147150-00 Rice plasma membrane 17.26 34.02
Protein Annotations
KEGG:00040+1.1.1.22KEGG:00053+1.1.1.22KEGG:00520+1.1.1.22Gene3D:1.20.5.100MapMan:3.13.3.1Gene3D:3.40.50.720
EntrezGene:4333156InterPro:6-PGluconate_DH-like_C_sfProteinID:AAS07200.1ProteinID:ABF96712.1ProteinID:BAF12319.2ProteinID:BAS84780.1
GO:GO:0000166GO:GO:0000271GO:GO:0003674GO:GO:0003824GO:GO:0003979GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0005829
GO:GO:0005975GO:GO:0006024GO:GO:0006065GO:GO:0006139GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0016491GO:GO:0016616GO:GO:0051287GO:GO:0055114
InterPro:NAD(P)-bd_dom_sfEnsemblPlantsGene:Os03g0425600EnsemblPlants:Os03t0425600-00PFAM:PF00984PFAM:PF03720PFAM:PF03721
PIRSF:PIRSF000124PIRSF:PIRSF500133PANTHER:PTHR11374PANTHER:PTHR11374:SF30UniProt:Q75GS4SMART:SM00984
SUPFAM:SSF48179SUPFAM:SSF51735SUPFAM:SSF52413TIGRFAMs:TIGR03026InterPro:UDP-Glc/GDP-ManInterPro:UDP-Glc/GDP-Man_DH_C
InterPro:UDP-Glc/GDP-Man_DH_C_sfInterPro:UDP-Glc/GDP-Man_DH_NInterPro:UDP-Glc/GDP-Man_DH_dimerInterPro:UDPglc_DH_eukUniParc:UPI0000239550RefSeq:XP_015630087.1
Description
UGD1UDP-glucose dehydrogenase. (Os03t0425600-00)
Coordinates
chr3:+:17774284..17776497
Molecular Weight (calculated)
52299.8 Da
IEP (calculated)
5.820
GRAVY (calculated)
0.041
Length
481 amino acids
Sequence
(BLAST)
001: MVKICCLGAG YVGGPTMAVI ALKCPDVEVV VVDISAARID AWNSDALPIY EPGLDDVVRR CRGRNLFFSS DVERHVGEAD IVFVSVNTPT KARGLGAGKA
101: ADLTYWESAA RMIAAVATSD KVVVEKSTVP VKTAEAIEKI LDHNGRDGVG FQILSNPEFL AEGTAIRDLL APDRVLIGGR ETAAGRAAVQ ALKDVYTRWV
201: PEERILTTNL WSAELSKLAA NAFLAQRISS VNAMSALCEA TGADVAEVAY AVGKDSRIGA KFLNASVGFG GSCFQKDILN LVYICECNGL PEVANYWKQV
301: IKINDYQKSR FVNRVVSSMF NTVAGKKIAV LGFAFKKDTG DTRETPAIDV CKGLIGDKAK VSIYDPQVTE DQVQRDLAMS KFDWDHPVHL QPMSPTAIKQ
401: VSVAWDAYEA ARAAHGVCIL TEWDEFRSLD YARIYGGMQK PAFVFDGRNV VDAEKLREIG FIVYSIGKPL DAWLKDMPAV A
Best Arabidopsis Sequence Match ( AT5G15490.1 )
(BLAST)
001: MVKICCIGAG YVGGPTMAVI ALKCPSVEVA VVDISVPRIN AWNSDQLPIY EPGLDDVVKQ CRGKNLFFST DVEKHVREAD IVFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSVSD KIVVEKSTVP VKTAEAIEKI LTHNSKGIKF QILSNPEFLA EGTAIEDLFM PDRVLIGGRE TTEGFAAVKA LKDIYAQWVP
201: EERILTTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GANVSEVSYA VGKDSRIGPK FLNSSVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI
301: KINDYQKTRF VNRIVSSMFN TVSNKKIAVL GFAFKKDTGD TRETPAIDVC KGLLGDKARL SIYDPQVTEE QIQRDLTMNK FDWDHPLHLQ PMSPTTVKQV
401: SVAWDAYTAT KDAHGICILT EWDEFKKLDF QRIFENMQKP AFVFDGRNVV DADKLREIGF IVYSIGKPLD QWLKDMPALA
Arabidopsis Description
UGD3UDP-glucose 6-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UJW9]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.