Factsheet for Solyc02g067080.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
golgi 4
extracellular 4
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	extracellular

nucleus: 25464976
unclear: 26455813
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064713	Potato	cytosol	89.19	97.84
Solyc02g088690.2.1	Tomato	nucleus	59.14	95.25
KRH44990	Soybean	nucleus	85.27	90.42
KRH01262	Soybean	nucleus	85.07	90.21
HORVU5Hr1G096370.1	Barley	extracellular, golgi	84.87	90.0
Bra008695.1-P	Field mustard	extracellular, golgi	84.87	90.0
CDY26425	Canola	extracellular, golgi	84.87	90.0
TraesCS5B01G399800.1	Wheat	unclear	84.87	90.0
Zm00001d034072_P001	Maize	extracellular	84.68	89.79
KXG37519	Sorghum	cytosol, extracellular	84.68	89.79
Zm00001d013245_P001	Maize	plasma membrane	84.68	89.79
TraesCS5D01G404300.1	Wheat	golgi	84.68	89.79
GSMUA_Achr4P14320_001	Banana	cytosol	72.1	89.51
CDX67427	Canola	cytosol, vacuole	84.28	89.38
AT5G15490.1	Thale cress	extracellular, vacuole	84.28	89.38
Os12t0443600-01	Rice	extracellular	84.28	89.38
EER95293	Sorghum	extracellular, vacuole	84.28	89.38
Bra028430.1-P	Field mustard	cytosol, vacuole	84.28	89.38
TraesCS5A01G394900.1	Wheat	extracellular, golgi	84.28	89.38
TraesCS4A01G264600.1	Wheat	extracellular	84.09	89.17
TraesCS4B01G050400.1	Wheat	extracellular	84.09	89.17
CDY37001	Canola	cytosol, vacuole	84.09	89.17
Bra028234.1-P	Field mustard	extracellular, vacuole	84.09	89.17
Os12t0443500-01	Rice	plasma membrane	84.09	89.17
Bra006303.1-P	Field mustard	extracellular, vacuole	84.09	89.17
GSMUA_Achr4P03270_001	Banana	cytosol	66.01	89.12
KRG93627	Soybean	endoplasmic reticulum	83.89	88.96
HORVU4Hr1G008270.1	Barley	extracellular, golgi	83.89	88.96
KRH18404	Soybean	endoplasmic reticulum	83.89	88.96
Os03t0757900-01	Rice	plasma membrane	83.89	88.96
TraesCS4D01G050600.2	Wheat	extracellular	83.89	88.96
GSMUA_Achr3P30310_001	Banana	cytosol	66.21	88.92
CDX69521	Canola	cytosol	64.44	88.89
AT5G39320.1	Thale cress	extracellular	83.69	88.75
Bra026264.1-P	Field mustard	extracellular, vacuole	43.03	88.66
HORVU4Hr1G021270.1	Barley	extracellular, golgi	83.1	88.12
TraesCS4A01G199200.1	Wheat	extracellular, golgi	83.1	88.12
GSMUA_Achr6P11090_001	Banana	cytosol	63.85	88.08
CDX74475	Canola	extracellular	44.6	87.98
TraesCS4D01G113800.1	Wheat	extracellular, golgi	82.91	87.92
TraesCS4B01G116200.1	Wheat	extracellular, golgi	82.91	87.92
AT3G29360.1	Thale cress	cytosol, vacuole	82.71	87.71
GSMUA_Achr4P07270_001	Banana	extracellular, golgi	64.44	87.23
GSMUA_Achr11P...	Banana	cytosol	65.82	87.01
GSMUA_Achr10P...	Banana	cytosol	64.24	86.97
Solyc03g115380.1.1	Tomato	nucleus, unclear	81.73	86.67
Solyc06g069550.1.1	Tomato	extracellular	81.53	86.46
Os03t0425600-00	Rice	plasma membrane	80.35	85.03
GSMUA_Achr3P18750_001	Banana	extracellular, golgi	59.53	84.17
GSMUA_Achr6P23920_001	Banana	cytosol	54.03	84.1
GSMUA_Achr7P26580_001	Banana	cytosol	21.02	82.31
Os03t0604200-01	Rice	plasma membrane	77.41	81.74
TraesCS4B01G077100.1	Wheat	cytosol, vacuole	77.01	81.67
TraesCS4A01G237900.1	Wheat	cytosol, vacuole	77.01	81.5
TraesCS4D01G075600.1	Wheat	cytosol, vacuole	77.01	81.5
Zm00001d033188_P001	Maize	extracellular	76.23	80.67
AT3G01010.1	Thale cress	cytosol	24.36	78.48
CDX90989	Canola	cytosol, golgi	83.69	77.74
KXG38049	Sorghum	endoplasmic reticulum, extracellular	75.83	77.35
Solyc03g065350.1.1	Tomato	cytosol, extracellular, peroxisome	42.44	76.87
CDX70614	Canola	cytosol, mitochondrion, peroxisome, plastid	84.09	76.57
CDX78633	Canola	cytosol	84.28	75.8
Bra025395.1-P	Field mustard	cytosol	14.15	75.79
CDX86369	Canola	cytosol	13.56	75.0
Bra023520.1-P	Field mustard	golgi	83.3	68.28
CDX85269	Canola	cytosol	29.27	67.73
CDX85549	Canola	cytosol	83.5	63.34
Os04t0581600-01	Rice	cytosol, mitochondrion, peroxisome	19.45	45.21
GSMUA_Achr4P10820_001	Banana	plasma membrane	62.87	43.07
Os03t0147150-00	Rice	plasma membrane	16.7	34.84

Protein Annotations

KEGG:00040+1.1.1.22	KEGG:00053+1.1.1.22	KEGG:00520+1.1.1.22	Gene3D:1.20.5.100	MapMan:3.13.3.1	Gene3D:3.40.50.720
InterPro:6-PGluconate_DH-like_C_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003979	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0006024	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016491	GO:GO:0016616
GO:GO:0051287	GO:GO:0055114	UniProt:K4B740	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00984	PFAM:PF03720
PFAM:PF03721	PIRSF:PIRSF000124	PIRSF:PIRSF500133	PANTHER:PTHR11374	PANTHER:PTHR11374:SF30	SMART:SM00984
SUPFAM:SSF48179	SUPFAM:SSF51735	SUPFAM:SSF52413	EnsemblPlantsGene:Solyc02g067080.2	EnsemblPlants:Solyc02g067080.2.1	TIGRFAMs:TIGR03026
InterPro:UDP-Glc/GDP-Man	InterPro:UDP-Glc/GDP-Man_DH_C	InterPro:UDP-Glc/GDP-Man_DH_C_sf	InterPro:UDP-Glc/GDP-Man_DH_N	InterPro:UDP-Glc/GDP-Man_DH_dimer	InterPro:UDPglc_DH_euk
UniParc:UPI0002768FFC	SEG:seg	:	:	:	:

Description

UDP-glucose 6-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:K4B740]

Coordinates

chr2:-:37309275..37311055

Molecular Weight (calculated)

56649.2 Da

IEP (calculated)

6.664

GRAVY (calculated)

-0.036

Length

509 amino acids

Sequence
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPSIEVV VVDISVPRIT AWNSDTLPIY EPGLYDIVKE CRGRNLFFST DVEKHVREAD IVFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSKSD KIVVEKSTVP VKTAEAIEKI LTHNSKGINF QILSNPEFLA EGTAIEDLFK PDRVLIGGRE TPGGQKAIQA LKDVYAQWVP
201: EERILTTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GANVSQVAYA VGKDSRIGPK FLNASVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI
301: KINDYQKNRF VNRVVASMFN TVSGKKVAIL GFAFKKDTGD TRETPAIDVC KGLLGDKANL SIYDPQVSED QIQRDLSMKK FDWDHPLHLQ PMSPTTVKQV
401: SVVWDAYTAT KDAHAVCILT EWDEFKSLDY KKMYDSMQKP AFIFDGRNVV DAEKLREIGF IVYSIGKPLD AWLKDILFTN QRYYLYDAVS WDSYLFFLLR
501: SVSVLFYPT

Best Arabidopsis Sequence Match ( AT5G15490.1 )
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPSVEVA VVDISVPRIN AWNSDQLPIY EPGLDDVVKQ CRGKNLFFST DVEKHVREAD IVFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSVSD KIVVEKSTVP VKTAEAIEKI LTHNSKGIKF QILSNPEFLA EGTAIEDLFM PDRVLIGGRE TTEGFAAVKA LKDIYAQWVP
201: EERILTTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GANVSEVSYA VGKDSRIGPK FLNSSVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI
301: KINDYQKTRF VNRIVSSMFN TVSNKKIAVL GFAFKKDTGD TRETPAIDVC KGLLGDKARL SIYDPQVTEE QIQRDLTMNK FDWDHPLHLQ PMSPTTVKQV
401: SVAWDAYTAT KDAHGICILT EWDEFKKLDF QRIFENMQKP AFVFDGRNVV DADKLREIGF IVYSIGKPLD QWLKDMPALA

Arabidopsis Description

UGD3UDP-glucose 6-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UJW9]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.