Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G264600.1 | Wheat | extracellular | 98.96 | 98.96 |
| TraesCS4D01G050600.2 | Wheat | extracellular | 98.33 | 98.33 |
| HORVU4Hr1G008270.1 | Barley | extracellular, golgi | 96.88 | 96.88 |
| TraesCS5B01G399800.1 | Wheat | unclear | 95.42 | 95.42 |
| Os12t0443500-01 | Rice | plasma membrane | 93.33 | 93.33 |
| Solyc02g088690.2.1 | Tomato | nucleus | 61.25 | 93.04 |
| KXG37519 | Sorghum | cytosol, extracellular | 92.71 | 92.71 |
| Zm00001d034072_P001 | Maize | extracellular | 92.5 | 92.5 |
| Zm00001d013245_P001 | Maize | plasma membrane | 92.5 | 92.5 |
| PGSC0003DMT400003666 | Potato | extracellular, vacuole | 89.79 | 89.61 |
| TraesCS4B01G116200.1 | Wheat | extracellular, golgi | 89.17 | 89.17 |
| PGSC0003DMT400064713 | Potato | cytosol | 86.04 | 89.01 |
| CDY26425 | Canola | extracellular, golgi | 88.75 | 88.75 |
| Bra008695.1-P | Field mustard | extracellular, golgi | 88.75 | 88.75 |
| CDX69521 | Canola | cytosol | 67.92 | 88.35 |
| KRH01262 | Soybean | nucleus | 88.33 | 88.33 |
| KRH44990 | Soybean | nucleus | 88.33 | 88.33 |
| Bra006303.1-P | Field mustard | extracellular, vacuole | 88.12 | 88.12 |
| AT5G15490.1 | Thale cress | extracellular, vacuole | 87.92 | 87.92 |
| Bra026264.1-P | Field mustard | extracellular, vacuole | 45.21 | 87.85 |
| KRH18404 | Soybean | endoplasmic reticulum | 87.71 | 87.71 |
| Bra028430.1-P | Field mustard | cytosol, vacuole | 87.5 | 87.5 |
| CDX67427 | Canola | cytosol, vacuole | 87.5 | 87.5 |
| KRG93627 | Soybean | endoplasmic reticulum | 87.5 | 87.5 |
| KRH75016 | Soybean | endoplasmic reticulum | 87.5 | 87.5 |
| KRH70872 | Soybean | endoplasmic reticulum | 87.29 | 87.29 |
| CDY37001 | Canola | cytosol, vacuole | 87.29 | 87.29 |
| AT5G39320.1 | Thale cress | extracellular | 87.08 | 87.08 |
| PGSC0003DMT400087395 | Potato | cytosol, golgi | 87.08 | 87.08 |
| Bra028234.1-P | Field mustard | extracellular, vacuole | 86.88 | 86.88 |
| AT3G29360.1 | Thale cress | cytosol, vacuole | 86.88 | 86.88 |
| CDX74475 | Canola | extracellular | 46.67 | 86.82 |
| Solyc03g115380.1.1 | Tomato | nucleus, unclear | 86.04 | 86.04 |
| PGSC0003DMT400069038 | Potato | cytosol | 32.29 | 85.16 |
| Solyc06g069550.1.1 | Tomato | extracellular | 84.79 | 84.79 |
| PGSC0003DMT400083187 | Potato | extracellular | 84.17 | 84.17 |
| Solyc02g067080.2.1 | Tomato | extracellular | 89.17 | 84.09 |
| TraesCS4B01G077100.1 | Wheat | cytosol, vacuole | 82.71 | 82.71 |
| AT1G26570.1 | Thale cress | cytosol, extracellular | 82.29 | 82.12 |
| Bra024708.1-P | Field mustard | cytosol, extracellular | 81.04 | 80.87 |
| CDY16166 | Canola | cytosol | 80.62 | 80.46 |
| Bra025395.1-P | Field mustard | cytosol | 15.62 | 78.95 |
| KRH03109 | Soybean | cytosol | 78.12 | 78.29 |
| CDX86369 | Canola | cytosol | 15.0 | 78.26 |
| KRH56847 | Soybean | cytosol | 77.71 | 78.03 |
| AT3G01010.1 | Thale cress | cytosol | 25.62 | 77.85 |
| KRG89491 | Soybean | cytosol | 47.5 | 77.29 |
| CDX70614 | Canola | cytosol, mitochondrion, peroxisome, plastid | 88.33 | 75.85 |
| CDX90989 | Canola | cytosol, golgi | 86.46 | 75.73 |
| KRH15845 | Soybean | cytosol | 52.08 | 75.53 |
| CDX78633 | Canola | cytosol | 88.33 | 74.91 |
| Solyc03g065350.1.1 | Tomato | cytosol, extracellular, peroxisome | 42.71 | 72.95 |
| Bra023520.1-P | Field mustard | golgi | 86.25 | 66.67 |
| CDX85269 | Canola | cytosol | 30.0 | 65.45 |
| CDX85549 | Canola | cytosol | 86.46 | 61.85 |
| CDY15951 | Canola | extracellular | 7.08 | 47.22 |
| Bra030352.1-P | Field mustard | extracellular | 7.08 | 47.22 |
Protein Annotations
| KEGG:00040+1.1.1.22 | KEGG:00053+1.1.1.22 | KEGG:00520+1.1.1.22 | Gene3D:1.20.5.100 | MapMan:3.13.3.1 | Gene3D:3.40.50.720 |
| InterPro:6-PGluconate_DH-like_C_sf | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003979 | GO:GO:0005488 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016616 | GO:GO:0051287 | GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf |
| PFAM:PF00984 | PFAM:PF03720 | PFAM:PF03721 | PIRSF:PIRSF000124 | PIRSF:PIRSF500133 | PANTHER:PTHR11374 |
| PANTHER:PTHR11374:SF30 | SMART:SM00984 | SUPFAM:SSF48179 | SUPFAM:SSF51735 | SUPFAM:SSF52413 | TIGRFAMs:TIGR03026 |
| EnsemblPlantsGene:TraesCS4B01G050400 | EnsemblPlants:TraesCS4B01G050400.1 | InterPro:UDP-Glc/GDP-Man | InterPro:UDP-Glc/GDP-Man_DH_C | InterPro:UDP-Glc/GDP-Man_DH_C_sf | InterPro:UDP-Glc/GDP-Man_DH_N |
| InterPro:UDP-Glc/GDP-Man_DH_dimer | InterPro:UDPglc_DH_euk | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:39014854..39016296
Molecular Weight (calculated)
52724.4 Da
IEP (calculated)
6.411
GRAVY (calculated)
-0.055
Length
480 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKICCIGAG YVGGPTMAVI AVKCPAIEVV VVDISKPRID AWNSDKLPIY EPGLDEVVKA CRGKNLFFST DVEKHVAEAD IIFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSKSD KIVVEKSTVP VKTAEAIEKI LTHNSKGINY QILSNPEFLA EGTAIEDLFK PDRVLIGGRE TPEGRKAVQA LKEVYAHWVP
201: EENIITTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GANVSEVSYA IGKDSRIGPK FLNASVGFGG SCFQKDILNL VYICECNGLP EVANYWKQVI
301: KINDYQKSRF VNRVVSSMFN TVSGKKVAIL GFAFKKDTGD TRETPAIDVC KGLLGDKAHV SIYDPEVTED QIQRDLAMNK FDWDHPMHLQ PASPSAIKQV
401: SVVWDAYEAT KGAHAVCILT EWNQFKELDY QKIFDNMQKP AFIFDGRNVV DAEKLRGIGF IVYSIGKPLD AWLKDMPAIA
101: ADLTYWESAA RMIADVSKSD KIVVEKSTVP VKTAEAIEKI LTHNSKGINY QILSNPEFLA EGTAIEDLFK PDRVLIGGRE TPEGRKAVQA LKEVYAHWVP
201: EENIITTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GANVSEVSYA IGKDSRIGPK FLNASVGFGG SCFQKDILNL VYICECNGLP EVANYWKQVI
301: KINDYQKSRF VNRVVSSMFN TVSGKKVAIL GFAFKKDTGD TRETPAIDVC KGLLGDKAHV SIYDPEVTED QIQRDLAMNK FDWDHPMHLQ PASPSAIKQV
401: SVVWDAYEAT KGAHAVCILT EWNQFKELDY QKIFDNMQKP AFIFDGRNVV DAEKLRGIGF IVYSIGKPLD AWLKDMPAIA
001: MVKICCIGAG YVGGPTMAVM ALKCPEIEVV VVDISEPRIN AWNSDRLPIY EPGLEDVVKQ CRGKNLFFST DVEKHVFESD IVFVSVNTPT KTQGLGAGKA
101: ADLTYWESAA RMIADVSKSS KIVVEKSTVP VRTAEAIEKI LTHNSKGIEF QILSNPEFLA EGTAIKDLYN PDRVLIGGRD TAAGQKAIKA LRDVYAHWVP
201: VEQIICTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GADVTQVAHA VGTDTRIGPK FLNASVGFGG SCFQKDILNL IYICECNGLP EAANYWKQVV
301: KVNDYQKIRF ANRVVSSMFN TVSGKKIAIL GFAFKKDTGD TRETPAIDVC NRLVADKAKL SIYDPQVLEE QIRRDLSMAR FDWDHPVPLQ QIKAEGISEQ
401: VNVVSDAYEA TKDAHGLCVL TEWDEFKSLD FKKIFDNMQK PAFVFDGRNV VDAVKLREIG FIVYSIGKPL DSWLKDMPAV A
101: ADLTYWESAA RMIADVSKSS KIVVEKSTVP VRTAEAIEKI LTHNSKGIEF QILSNPEFLA EGTAIKDLYN PDRVLIGGRD TAAGQKAIKA LRDVYAHWVP
201: VEQIICTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GADVTQVAHA VGTDTRIGPK FLNASVGFGG SCFQKDILNL IYICECNGLP EAANYWKQVV
301: KVNDYQKIRF ANRVVSSMFN TVSGKKIAIL GFAFKKDTGD TRETPAIDVC NRLVADKAKL SIYDPQVLEE QIRRDLSMAR FDWDHPVPLQ QIKAEGISEQ
401: VNVVSDAYEA TKDAHGLCVL TEWDEFKSLD FKKIFDNMQK PAFVFDGRNV VDAVKLREIG FIVYSIGKPL DSWLKDMPAV A
Arabidopsis Description
UGD1UDP-glucose 6-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178WCI2]
SUBAcon: [extracellular,cytosol]
SUBAcon: [extracellular,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.