Factsheet for Solyc02g088690.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 5
golgi 5
plasma membrane 4
endoplasmic reticulum 4
vacuole 5
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

nucleus: 25464976
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026264.1-P	Field mustard	extracellular, vacuole	69.62	89.07
CDX74475	Canola	extracellular	70.57	86.43
CDX86369	Canola	cytosol	19.94	68.48
Bra025395.1-P	Field mustard	cytosol	20.25	67.37
PGSC0003DMT400003666	Potato	extracellular, vacuole	98.42	64.66
TraesCS5A01G394900.1	Wheat	extracellular, golgi	94.62	62.29
TraesCS5D01G404300.1	Wheat	golgi	94.3	62.08
TraesCS5B01G399800.1	Wheat	unclear	94.3	62.08
KXG37519	Sorghum	cytosol, extracellular	93.99	61.88
HORVU5Hr1G096370.1	Barley	extracellular, golgi	93.67	61.67
Zm00001d034072_P001	Maize	extracellular	93.35	61.46
HORVU4Hr1G008270.1	Barley	extracellular, golgi	93.35	61.46
Zm00001d013245_P001	Maize	plasma membrane	93.04	61.25
TraesCS4B01G050400.1	Wheat	extracellular	93.04	61.25
TraesCS4D01G050600.2	Wheat	extracellular	92.72	61.04
TraesCS4A01G264600.1	Wheat	extracellular	92.72	61.04
AT3G29360.1	Thale cress	cytosol, vacuole	92.72	61.04
Bra008695.1-P	Field mustard	extracellular, golgi	92.41	60.83
Os12t0443600-01	Rice	extracellular	92.41	60.83
Os03t0757900-01	Rice	plasma membrane	92.41	60.83
KRH01262	Soybean	nucleus	92.41	60.83
CDY26425	Canola	extracellular, golgi	92.09	60.62
KRH44990	Soybean	nucleus	92.09	60.62
KRH18404	Soybean	endoplasmic reticulum	92.09	60.62
EER95293	Sorghum	extracellular, vacuole	91.77	60.42
Os12t0443500-01	Rice	plasma membrane	91.77	60.42
AT5G15490.1	Thale cress	extracellular, vacuole	91.77	60.42
Bra006303.1-P	Field mustard	extracellular, vacuole	91.77	60.42
KRG93627	Soybean	endoplasmic reticulum	91.77	60.42
Solyc03g115380.1.1	Tomato	nucleus, unclear	91.46	60.21
TraesCS4D01G113800.1	Wheat	extracellular, golgi	91.14	60.0
HORVU4Hr1G021270.1	Barley	extracellular, golgi	91.14	60.0
GSMUA_Achr4P14320_001	Banana	cytosol	77.85	60.0
TraesCS4B01G116200.1	Wheat	extracellular, golgi	91.14	60.0
TraesCS4A01G199200.1	Wheat	extracellular, golgi	91.14	60.0
CDX67427	Canola	cytosol, vacuole	90.51	59.58
Bra028430.1-P	Field mustard	cytosol, vacuole	90.51	59.58
AT5G39320.1	Thale cress	extracellular	90.19	59.38
CDY37001	Canola	cytosol, vacuole	90.19	59.38
Bra028234.1-P	Field mustard	extracellular, vacuole	90.19	59.38
Solyc02g067080.2.1	Tomato	extracellular	95.25	59.14
GSMUA_Achr4P03270_001	Banana	cytosol	70.25	58.89
GSMUA_Achr3P30310_001	Banana	cytosol	70.25	58.58
Solyc06g069550.1.1	Tomato	extracellular	88.29	58.12
GSMUA_Achr6P11090_001	Banana	cytosol	66.77	57.18
GSMUA_Achr10P...	Banana	cytosol	68.04	57.18
GSMUA_Achr3P18750_001	Banana	extracellular, golgi	64.87	56.94
Os03t0425600-00	Rice	plasma membrane	86.39	56.76
TraesCS4B01G077100.1	Wheat	cytosol, vacuole	86.08	56.67
GSMUA_Achr4P07270_001	Banana	extracellular, golgi	67.41	56.65
GSMUA_Achr11P...	Banana	cytosol	68.67	56.36
TraesCS4D01G075600.1	Wheat	cytosol, vacuole	85.44	56.13
TraesCS4A01G237900.1	Wheat	cytosol, vacuole	85.44	56.13
Os03t0604200-01	Rice	plasma membrane	85.44	56.02
Zm00001d033188_P001	Maize	extracellular	83.54	54.89
Solyc03g065350.1.1	Tomato	cytosol, extracellular, peroxisome	48.1	54.09
CDX90989	Canola	cytosol, golgi	91.77	52.92
KXG38049	Sorghum	endoplasmic reticulum, extracellular	82.91	52.51
CDX70614	Canola	cytosol, mitochondrion, peroxisome, plastid	91.77	51.88
CDX78633	Canola	cytosol	91.77	51.24
CDX69521	Canola	cytosol	58.86	50.41
GSMUA_Achr6P23920_001	Banana	cytosol	51.27	49.54
Bra023520.1-P	Field mustard	golgi	91.46	46.54
CDX85549	Canola	cytosol	91.77	43.22
Os04t0581600-01	Rice	cytosol, mitochondrion, peroxisome	29.11	42.01
CDX85269	Canola	cytosol	29.11	41.82
Os03t0147150-00	Rice	plasma membrane	22.78	29.51
GSMUA_Achr4P10820_001	Banana	plasma membrane	65.19	27.73
GSMUA_Achr7P26580_001	Banana	cytosol	0.63	1.54
AT3G01010.1	Thale cress	cytosol	0.32	0.63

Protein Annotations

Gene3D:1.20.5.100	MapMan:3.13.3.1	Gene3D:3.40.50.720	InterPro:6-PGluconate_DH-like_C_sf	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0006024	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	UniProt:K4BC24	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00984
PFAM:PF03721	PANTHER:PTHR11374	PANTHER:PTHR11374:SF30	SUPFAM:SSF48179	SUPFAM:SSF51735	EnsemblPlantsGene:Solyc02g088690.2
EnsemblPlants:Solyc02g088690.2.1	TIGRFAMs:TIGR03026	InterPro:UDP-Glc/GDP-Man	InterPro:UDP-Glc/GDP-Man_DH_N	InterPro:UDP-Glc/GDP-Man_DH_dimer	UniParc:UPI00027686E1

Description

UDP-glucose 6-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:K4BC24]

Coordinates

chr2:-:50680015..50681353

Molecular Weight (calculated)

34344.5 Da

IEP (calculated)

7.696

GRAVY (calculated)

0.062

Length

316 amino acids

Sequence
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPKIEVV VVDISVPRIT AWNSDTLPIY EPGLDDVVKQ CRGKNLFFST DVEKHVHEAD IVFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSKSD KIVVEKSTVP VKTAEAIEKI LTHNSKGINF QILSNPEFLA EGTAIDDLFK PDRVLIGGRE TPGGQKAIQA LKDVYAHWVP
201: EANIITTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GANVSQVAYA VGKDSRIGPK FLNASVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI
301: KINDYQKSRF VNRLQF

Best Arabidopsis Sequence Match ( AT3G29360.2 )
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPDVEVA VVDISVPRIN AWNSDTLPIY EPGLDDVVKQ CRGKNLFFST DVEKHVREAD IVFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSVSD KIVVEKSTVP VKTAEAIEKI LTHNSKGIKF QILSNPEFLA EGTAIKDLFN PDRVLIGGRE TPEGFKAVQT LKNVYAHWVP
201: EGQIITTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GADVTQVSYA VGTDSRIGPK FLNSSVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI
301: KINDYQKSRF VNRVVSSMFN SVSNKKIAVL GFAFKKDTGD TRETPAIDVC KGLLEDKARL SIYDPQVTED QIQRDLSMNK FDWDHPLHLQ PMSPTTVKQV
401: TVTWDAYEAT KDAHGICIMT EWDEFKNLDF QKIFDNMQKP AFVFDGRNIM NLQKLREIGF IVYSIGKPLD DWLKDMPAVA

Arabidopsis Description

UGD2UDP-glucose 6-dehydrogenase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIA8]
SUBAcon: [cytosol,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.