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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, extracellular

Predictor Summary:
  • cytosol 2
  • golgi 5
  • extracellular 4
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, golgi
Any Predictor:cytosol, plastid, secretory
BaCelLo:cytosol
EpiLoc:golgi
iPSORT:secretory
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:golgi
 extracellular: 19786127
golgi: 23128297
msms PMID: 19786127 doi
FJ Kong, A Oyanagi, S Komatsu
National Institute of Crop Science, Tsukuba 305-8518, Japan.
msms, gfp PMID: 23128297 doi
M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS4A01G199200.1
TraesCS4A01G237900.1
TraesCS4A01G264600.1
TraesCS4B01G050400.1
TraesCS4B01G077100.1
TraesCS4B01G116200.1
TraesCS4D01G050600.2
TraesCS4D01G075600.1
TraesCS4D01G113800.1
TraesCS5A01G394900.1
TraesCS5B01G399800.1
TraesCS5D01G404300.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G39320.1 TraesCS4A01G199200.1 AT1G26570.1 21798944
AT5G39320.1 TraesCS4A01G237900.1 AT1G26570.1 21798944
AT5G39320.1 TraesCS4A01G264600.1 AT1G26570.1 21798944
AT5G39320.1 TraesCS4B01G050400.1 AT1G26570.1 21798944
AT5G39320.1 TraesCS4B01G077100.1 AT1G26570.1 21798944
AT5G39320.1 TraesCS4B01G116200.1 AT1G26570.1 21798944
AT5G39320.1 TraesCS4D01G050600.2 AT1G26570.1 21798944
AT5G39320.1 TraesCS4D01G075600.1 AT1G26570.1 21798944
AT5G39320.1 TraesCS4D01G113800.1 AT1G26570.1 21798944
AT5G39320.1 TraesCS5A01G394900.1 AT1G26570.1 21798944
AT5G39320.1 TraesCS5B01G399800.1 AT1G26570.1 21798944
AT5G39320.1 TraesCS5D01G404300.1 AT1G26570.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU4Hr1G021270.1 Barley extracellular, golgi 100.0 100.0
TraesCS4D01G113800.1 Wheat extracellular, golgi 99.79 99.79
TraesCS4B01G116200.1 Wheat extracellular, golgi 99.79 99.79
GSMUA_Achr4P14320_001 Banana cytosol 79.38 92.93
EER95293 Sorghum extracellular, vacuole 92.08 92.08
GSMUA_Achr4P03270_001 Banana cytosol 72.29 92.04
Solyc02g088690.2.1 Tomato nucleus 60.0 91.14
TraesCS5A01G394900.1 Wheat extracellular, golgi 90.83 90.83
GSMUA_Achr6P11090_001 Banana cytosol 69.38 90.24
GSMUA_Achr11P... Banana cytosol 72.29 90.13
CDX69521 Canola cytosol 69.17 89.97
KRH18404 Soybean endoplasmic reticulum 89.79 89.79
TraesCS4A01G264600.1 Wheat extracellular 89.79 89.79
GSMUA_Achr3P30310_001 Banana cytosol 70.83 89.71
KRH44990 Soybean nucleus 89.58 89.58
KRG93627 Soybean endoplasmic reticulum 89.58 89.58
AT3G29360.1 Thale cress cytosol, vacuole 89.58 89.58
CDY26425 Canola extracellular, golgi 89.17 89.17
Bra008695.1-P Field mustard extracellular, golgi 89.17 89.17
GSMUA_Achr10P... Banana cytosol 69.79 89.1
KRH01262 Soybean nucleus 88.96 88.96
PGSC0003DMT400003666 Potato extracellular, vacuole 88.96 88.77
GSMUA_Achr4P07270_001 Banana extracellular, golgi 69.38 88.56
KRH70872 Soybean endoplasmic reticulum 88.54 88.54
Bra006303.1-P Field mustard extracellular, vacuole 88.54 88.54
KRH75016 Soybean endoplasmic reticulum 88.33 88.33
AT5G15490.1 Thale cress extracellular, vacuole 88.33 88.33
PGSC0003DMT400064713 Potato cytosol 84.79 87.72
PGSC0003DMT400087395 Potato cytosol, golgi 87.71 87.71
GSMUA_Achr6P23920_001 Banana cytosol 59.38 87.16
Os03t0425600-00 Rice plasma membrane 87.08 86.9
AT5G39320.1 Thale cress extracellular 86.88 86.88
Solyc03g115380.1.1 Tomato nucleus, unclear 86.88 86.88
CDX67427 Canola cytosol, vacuole 86.67 86.67
Bra028430.1-P Field mustard cytosol, vacuole 86.67 86.67
CDY37001 Canola cytosol, vacuole 86.67 86.67
Bra026264.1-P Field mustard extracellular, vacuole 44.38 86.23
GSMUA_Achr7P26580_001 Banana cytosol 23.33 86.15
GSMUA_Achr3P18750_001 Banana extracellular, golgi 64.58 86.11
Bra028234.1-P Field mustard extracellular, vacuole 86.04 86.04
PGSC0003DMT400083187 Potato extracellular 85.83 85.83
PGSC0003DMT400069038 Potato cytosol 32.5 85.71
CDX74475 Canola extracellular 46.04 85.66
Solyc06g069550.1.1 Tomato extracellular 85.62 85.62
AT3G01010.1 Thale cress cytosol 27.71 84.18
Solyc02g067080.2.1 Tomato extracellular 88.12 83.1
AT1G26570.1 Thale cress cytosol, extracellular 82.08 81.91
TraesCS4A01G237900.1 Wheat cytosol, vacuole 81.88 81.7
Bra024708.1-P Field mustard cytosol, extracellular 80.42 80.25
CDY16166 Canola cytosol 80.0 79.83
KRH03109 Soybean cytosol 79.17 79.33
KRH56847 Soybean cytosol 78.12 78.45
KRG89491 Soybean cytosol 48.12 78.31
KRH15845 Soybean cytosol 52.92 76.74
CDX70614 Canola cytosol, mitochondrion, peroxisome, plastid 88.54 76.03
Bra025395.1-P Field mustard cytosol 15.0 75.79
CDX90989 Canola cytosol, golgi 86.46 75.73
CDX78633 Canola cytosol 88.75 75.27
CDX86369 Canola cytosol 14.38 75.0
Solyc03g065350.1.1 Tomato cytosol, extracellular, peroxisome 42.08 71.89
Bra023520.1-P Field mustard golgi 86.46 66.83
CDX85269 Canola cytosol 30.42 66.36
CDX85549 Canola cytosol 86.67 62.0
Bra030352.1-P Field mustard extracellular 6.88 45.83
CDY15951 Canola extracellular 6.88 45.83
GSMUA_Achr4P10820_001 Banana plasma membrane 66.67 43.07
Protein Annotations
KEGG:00040+1.1.1.22KEGG:00053+1.1.1.22KEGG:00520+1.1.1.22Gene3D:1.20.5.100MapMan:3.13.3.1Gene3D:3.40.50.720
InterPro:6-PGluconate_DH-like_C_sfGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003979GO:GO:0005488
GO:GO:0008150GO:GO:0008152GO:GO:0016616GO:GO:0051287GO:GO:0055114InterPro:NAD(P)-bd_dom_sf
PFAM:PF00984PFAM:PF03720PFAM:PF03721PIRSF:PIRSF000124PIRSF:PIRSF500133PANTHER:PTHR11374
PANTHER:PTHR11374:SF30SMART:SM00984SUPFAM:SSF48179SUPFAM:SSF51735SUPFAM:SSF52413TIGRFAMs:TIGR03026
EnsemblPlantsGene:TraesCS4A01G199200EnsemblPlants:TraesCS4A01G199200.1InterPro:UDP-Glc/GDP-ManInterPro:UDP-Glc/GDP-Man_DH_CInterPro:UDP-Glc/GDP-Man_DH_C_sfInterPro:UDP-Glc/GDP-Man_DH_N
InterPro:UDP-Glc/GDP-Man_DH_dimerInterPro:UDPglc_DH_euk::::
Description
No Description!
Coordinates
chr4A:-:486124572..486126014
Molecular Weight (calculated)
52919.4 Da
IEP (calculated)
5.775
GRAVY (calculated)
-0.113
Length
480 amino acids
Sequence
(BLAST)
001: MVKICCLGAG YVGGPTMAVI ALKCPDIQVV VVDITKSRID AWNSDTLPIY EPGLDEVVKQ CRGKNLFFSN DIEKHVSEAD IIFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVAKSD KIVVEKSTVP VKTAEAIEKI LTHNSNGINF QILSNPEFLA EGTAIQDLFN PDRVLIGGRE TPEGQKAVQT LKAVYAHWVP
201: EDQILTTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GANVSEVSYA VGKDSRIGPK FLNASVGFGG SCFQKDILNL VYICECNGLP EVANYWKQVI
301: KINDYQKSRF VNRVVSSMFN TVANKKIAVL GFAFKKDTGD TRETPAIDVC KGLLGDKAKI SIYDPQVTED QIQRDLAMNK FDWDHPVHLQ PMSPTTTKQV
401: SVTWDAYEAT KDAHGICIMT EWDEFKTLDY KKIYDSMQKP AFVFDGRNVV DSEKLREIGF IVYSIGKPLD GWLKDMPAVA
Best Arabidopsis Sequence Match ( AT3G29360.2 )
(BLAST)
001: MVKICCIGAG YVGGPTMAVI ALKCPDVEVA VVDISVPRIN AWNSDTLPIY EPGLDDVVKQ CRGKNLFFST DVEKHVREAD IVFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSVSD KIVVEKSTVP VKTAEAIEKI LTHNSKGIKF QILSNPEFLA EGTAIKDLFN PDRVLIGGRE TPEGFKAVQT LKNVYAHWVP
201: EGQIITTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GADVTQVSYA VGTDSRIGPK FLNSSVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI
301: KINDYQKSRF VNRVVSSMFN SVSNKKIAVL GFAFKKDTGD TRETPAIDVC KGLLEDKARL SIYDPQVTED QIQRDLSMNK FDWDHPLHLQ PMSPTTVKQV
401: TVTWDAYEAT KDAHGICIMT EWDEFKNLDF QKIFDNMQKP AFVFDGRNIM NLQKLREIGF IVYSIGKPLD DWLKDMPAVA
Arabidopsis Description
UGD2UDP-glucose 6-dehydrogenase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIA8]
SUBAcon: [vacuole,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.