CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
golgi 4
extracellular 4
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

nucleus: 21132161
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89491
KRH70872
KRH75016

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39320.1	KRG89491	AT1G26570.1	21798944
AT5G39320.1	KRH70872	AT1G26570.1	21798944
AT5G39320.1	KRH75016	AT1G26570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44990	Soybean	nucleus	99.17	99.17
KRH18404	Soybean	endoplasmic reticulum	93.96	93.96
KRG93627	Soybean	endoplasmic reticulum	93.12	93.12
Solyc02g088690.2.1	Tomato	nucleus	60.83	92.41
AT5G15490.1	Thale cress	extracellular, vacuole	90.83	90.83
AT3G29360.1	Thale cress	cytosol, vacuole	90.62	90.62
KXG37519	Sorghum	cytosol, extracellular	90.42	90.42
CDY26425	Canola	extracellular, golgi	90.42	90.42
Zm00001d034072_P001	Maize	extracellular	90.21	90.21
Bra008695.1-P	Field mustard	extracellular, golgi	90.21	90.21
PGSC0003DMT400064713	Potato	cytosol	87.08	90.09
PGSC0003DMT400003666	Potato	extracellular, vacuole	90.21	90.02
Bra006303.1-P	Field mustard	extracellular, vacuole	90.0	90.0
Os12t0443600-01	Rice	extracellular	90.0	90.0
Zm00001d013245_P001	Maize	plasma membrane	89.79	89.79
TraesCS5B01G399800.1	Wheat	unclear	89.58	89.58
Os12t0443500-01	Rice	plasma membrane	89.58	89.58
TraesCS5D01G404300.1	Wheat	golgi	89.38	89.38
AT5G39320.1	Thale cress	extracellular	89.38	89.38
HORVU5Hr1G096370.1	Barley	extracellular, golgi	89.17	89.17
Os03t0757900-01	Rice	plasma membrane	89.17	89.17
CDX69521	Canola	cytosol	68.54	89.16
Bra026264.1-P	Field mustard	extracellular, vacuole	45.83	89.07
TraesCS5A01G394900.1	Wheat	extracellular, golgi	88.96	88.96
HORVU4Hr1G008270.1	Barley	extracellular, golgi	88.96	88.96
HORVU4Hr1G021270.1	Barley	extracellular, golgi	88.96	88.96
TraesCS4A01G199200.1	Wheat	extracellular, golgi	88.96	88.96
GSMUA_Achr4P14320_001	Banana	cytosol	75.83	88.78
Bra028430.1-P	Field mustard	cytosol, vacuole	88.75	88.75
TraesCS4A01G264600.1	Wheat	extracellular	88.75	88.75
CDX67427	Canola	cytosol, vacuole	88.75	88.75
TraesCS4D01G113800.1	Wheat	extracellular, golgi	88.75	88.75
TraesCS4B01G116200.1	Wheat	extracellular, golgi	88.75	88.75
GSMUA_Achr4P03270_001	Banana	cytosol	69.58	88.59
CDY37001	Canola	cytosol, vacuole	88.54	88.54
Bra028234.1-P	Field mustard	extracellular, vacuole	88.54	88.54
TraesCS4D01G050600.2	Wheat	extracellular	88.54	88.54
CDX74475	Canola	extracellular	47.5	88.37
TraesCS4B01G050400.1	Wheat	extracellular	88.33	88.33
KRH75016	Soybean	endoplasmic reticulum	88.33	88.33
KRH70872	Soybean	endoplasmic reticulum	88.12	88.12
EER95293	Sorghum	extracellular, vacuole	88.12	88.12
GSMUA_Achr4P07270_001	Banana	extracellular, golgi	68.33	87.23
GSMUA_Achr3P30310_001	Banana	cytosol	68.75	87.07
GSMUA_Achr10P...	Banana	cytosol	67.92	86.7
GSMUA_Achr6P11090_001	Banana	cytosol	66.46	86.45
GSMUA_Achr11P...	Banana	cytosol	68.96	85.97
PGSC0003DMT400069038	Potato	cytosol	32.29	85.16
Solyc02g067080.2.1	Tomato	extracellular	90.21	85.07
GSMUA_Achr6P23920_001	Banana	cytosol	57.5	84.4
Os03t0425600-00	Rice	plasma membrane	83.96	83.78
GSMUA_Achr3P18750_001	Banana	extracellular, golgi	62.71	83.61
AT3G01010.1	Thale cress	cytosol	27.29	82.91
GSMUA_Achr7P26580_001	Banana	cytosol	22.29	82.31
TraesCS4B01G077100.1	Wheat	cytosol, vacuole	82.08	82.08
TraesCS4D01G075600.1	Wheat	cytosol, vacuole	81.88	81.7
Os03t0604200-01	Rice	plasma membrane	81.67	81.33
TraesCS4A01G237900.1	Wheat	cytosol, vacuole	81.46	81.29
Zm00001d033188_P001	Maize	extracellular	81.46	81.29
Bra025395.1-P	Field mustard	cytosol	16.04	81.05
KRH03109	Soybean	cytosol	79.79	79.96
KRH56847	Soybean	cytosol	79.17	79.5
CDX86369	Canola	cytosol	15.21	79.35
KRG89491	Soybean	cytosol	48.33	78.64
KXG38049	Sorghum	endoplasmic reticulum, extracellular	81.04	77.96
CDX70614	Canola	cytosol, mitochondrion, peroxisome, plastid	90.0	77.28
KRH15845	Soybean	cytosol	53.12	77.04
CDX90989	Canola	cytosol, golgi	87.71	76.82
CDX78633	Canola	cytosol	90.21	76.5
Solyc03g065350.1.1	Tomato	cytosol, extracellular, peroxisome	42.71	72.95
CDX85269	Canola	cytosol	31.46	68.64
Bra023520.1-P	Field mustard	golgi	87.71	67.79
CDX85549	Canola	cytosol	87.92	62.89
Os04t0581600-01	Rice	cytosol, mitochondrion, peroxisome	20.21	44.29
GSMUA_Achr4P10820_001	Banana	plasma membrane	66.04	42.66
Os03t0147150-00	Rice	plasma membrane	17.5	34.43

Protein Annotations

KEGG:00040+1.1.1.22	KEGG:00053+1.1.1.22	KEGG:00520+1.1.1.22	Gene3D:1.20.5.100	EntrezGene:100803962	MapMan:3.13.3.1
Gene3D:3.40.50.720	InterPro:6-PGluconate_DH-like_C_sf	EMBL:ACUP02011509	EnsemblPlantsGene:GLYMA_18G265100	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003979	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006024	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	UniProt:I1N4I6
EnsemblPlants:KRH01262	ProteinID:KRH01262	ProteinID:KRH01262.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00984	PFAM:PF03720
PFAM:PF03721	PIRSF:PIRSF000124	PIRSF:PIRSF500133	PANTHER:PTHR11374	PANTHER:PTHR11374:SF30	MetaCyc:PWY-7346
MetaCyc:PWY-7820	SMART:SM00984	SUPFAM:SSF48179	SUPFAM:SSF51735	SUPFAM:SSF52413	TIGRFAMs:TIGR03026
InterPro:UDP-Glc/GDP-Man	InterPro:UDP-Glc/GDP-Man_DH_C	InterPro:UDP-Glc/GDP-Man_DH_C_sf	InterPro:UDP-Glc/GDP-Man_DH_N	InterPro:UDP-Glc/GDP-Man_DH_dimer	InterPro:UDPglc_DH_euk
UniParc:UPI0001CAB91F	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:54995065..54997875

Molecular Weight (calculated)

52984.6 Da

IEP (calculated)

5.814

GRAVY (calculated)

-0.089

Length

480 amino acids

Sequence
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPSIEVA VVDISKSRIA AWNSDQLPIY EPGLDGVVKQ CRGKNLFFST DVEKHVFEAD IVFVSVNTPT KTQGLGAGKA
101: ADLTYWESAA RMIADVSKSD KIVVEKSTVP VKTAEAIEKI LTHNSKGIRF QILSNPEFLA EGTAIKDLFN PDRVLIGGRE TPEGQKAIQA LKDVYAQWVP
201: EERILTTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GANVQQVSYS VGTDSRIGPK FLNASVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI
301: KINDYQKSRF VNRVVASMFN TVSNKKIAIL GFAFKKDTGD TRETPAIDVC QGLLGDKANL SIYDPQVTED QIQRDLSMNK FDWDHPIHLQ PTSPTTVKKV
401: SVVWDAYEAT KDAHGLCILT EWDEFKTLDY QRIFDNMQKP AFVFDGRNIV DADKLREIGF IVYSIGKPLD PWLKDMPALA

Best Arabidopsis Sequence Match ( AT5G15490.1 )
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPSVEVA VVDISVPRIN AWNSDQLPIY EPGLDDVVKQ CRGKNLFFST DVEKHVREAD IVFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSVSD KIVVEKSTVP VKTAEAIEKI LTHNSKGIKF QILSNPEFLA EGTAIEDLFM PDRVLIGGRE TTEGFAAVKA LKDIYAQWVP
201: EERILTTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GANVSEVSYA VGKDSRIGPK FLNSSVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI
301: KINDYQKTRF VNRIVSSMFN TVSNKKIAVL GFAFKKDTGD TRETPAIDVC KGLLGDKARL SIYDPQVTEE QIQRDLTMNK FDWDHPLHLQ PMSPTTVKQV
401: SVAWDAYTAT KDAHGICILT EWDEFKKLDF QRIFENMQKP AFVFDGRNVV DADKLREIGF IVYSIGKPLD QWLKDMPALA

Arabidopsis Description

UGD3UDP-glucose 6-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UJW9]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.