Skip to main content
crop-pal logo
Soybean
Search for another protein from :
Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 2
  • golgi 4
  • extracellular 4
  • endoplasmic reticulum 3
  • vacuole 4
  • plasma membrane 3
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, plastid, secretory
BaCelLo:cytosol
EpiLoc:golgi
iPSORT:secretory
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:vacuole
 nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG89491
KRH70872
KRH75016

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G39320.1 KRG89491 AT1G26570.1 21798944
AT5G39320.1 KRH70872 AT1G26570.1 21798944
AT5G39320.1 KRH75016 AT1G26570.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH01262 Soybean nucleus 99.17 99.17
KRH18404 Soybean endoplasmic reticulum 94.79 94.79
KRG93627 Soybean endoplasmic reticulum 93.96 93.96
Solyc02g088690.2.1 Tomato nucleus 60.62 92.09
AT3G29360.1 Thale cress cytosol, vacuole 91.46 91.46
KXG37519 Sorghum cytosol, extracellular 90.62 90.62
Zm00001d034072_P001 Maize extracellular 90.42 90.42
AT5G15490.1 Thale cress extracellular, vacuole 90.42 90.42
CDY26425 Canola extracellular, golgi 90.42 90.42
PGSC0003DMT400003666 Potato extracellular, vacuole 90.42 90.23
Bra008695.1-P Field mustard extracellular, golgi 90.21 90.21
Zm00001d013245_P001 Maize plasma membrane 90.21 90.21
PGSC0003DMT400064713 Potato cytosol 87.08 90.09
AT5G39320.1 Thale cress extracellular 90.0 90.0
Bra026264.1-P Field mustard extracellular, vacuole 46.25 89.88
Os12t0443600-01 Rice extracellular 89.79 89.79
Os12t0443500-01 Rice plasma membrane 89.79 89.79
TraesCS5B01G399800.1 Wheat unclear 89.79 89.79
TraesCS4A01G199200.1 Wheat extracellular, golgi 89.58 89.58
Bra006303.1-P Field mustard extracellular, vacuole 89.58 89.58
HORVU4Hr1G021270.1 Barley extracellular, golgi 89.58 89.58
TraesCS5D01G404300.1 Wheat golgi 89.58 89.58
TraesCS4B01G116200.1 Wheat extracellular, golgi 89.38 89.38
Bra028430.1-P Field mustard cytosol, vacuole 89.38 89.38
CDX67427 Canola cytosol, vacuole 89.38 89.38
HORVU5Hr1G096370.1 Barley extracellular, golgi 89.38 89.38
Os03t0757900-01 Rice plasma membrane 89.38 89.38
TraesCS4D01G113800.1 Wheat extracellular, golgi 89.38 89.38
CDY37001 Canola cytosol, vacuole 89.17 89.17
TraesCS5A01G394900.1 Wheat extracellular, golgi 89.17 89.17
Bra028234.1-P Field mustard extracellular, vacuole 89.17 89.17
CDX69521 Canola cytosol 68.54 89.16
CDX74475 Canola extracellular 47.92 89.15
GSMUA_Achr4P03270_001 Banana cytosol 70.0 89.12
HORVU4Hr1G008270.1 Barley extracellular, golgi 88.96 88.96
GSMUA_Achr4P14320_001 Banana cytosol 75.83 88.78
KRH75016 Soybean endoplasmic reticulum 88.75 88.75
TraesCS4A01G264600.1 Wheat extracellular 88.75 88.75
TraesCS4D01G050600.2 Wheat extracellular 88.54 88.54
KRH70872 Soybean endoplasmic reticulum 88.54 88.54
TraesCS4B01G050400.1 Wheat extracellular 88.33 88.33
EER95293 Sorghum extracellular, vacuole 88.33 88.33
GSMUA_Achr4P07270_001 Banana extracellular, golgi 68.75 87.77
GSMUA_Achr3P30310_001 Banana cytosol 69.17 87.6
GSMUA_Achr10P... Banana cytosol 67.92 86.7
GSMUA_Achr6P11090_001 Banana cytosol 66.25 86.18
GSMUA_Achr11P... Banana cytosol 68.75 85.71
Solyc02g067080.2.1 Tomato extracellular 90.42 85.27
PGSC0003DMT400069038 Potato cytosol 32.29 85.16
GSMUA_Achr6P23920_001 Banana cytosol 57.92 85.02
GSMUA_Achr7P26580_001 Banana cytosol 22.71 83.85
GSMUA_Achr3P18750_001 Banana extracellular, golgi 62.71 83.61
Os03t0425600-00 Rice plasma membrane 83.75 83.58
Bra025395.1-P Field mustard cytosol 16.25 82.11
TraesCS4B01G077100.1 Wheat cytosol, vacuole 81.88 81.88
AT3G01010.1 Thale cress cytosol 26.88 81.65
TraesCS4D01G075600.1 Wheat cytosol, vacuole 81.67 81.5
TraesCS4A01G237900.1 Wheat cytosol, vacuole 81.25 81.08
Zm00001d033188_P001 Maize extracellular 81.25 81.08
Os03t0604200-01 Rice plasma membrane 81.25 80.91
CDX86369 Canola cytosol 15.42 80.43
KRH03109 Soybean cytosol 79.79 79.96
KRH56847 Soybean cytosol 79.17 79.5
KRG89491 Soybean cytosol 48.54 78.98
KXG38049 Sorghum endoplasmic reticulum, extracellular 80.83 77.76
KRH15845 Soybean cytosol 53.33 77.34
CDX90989 Canola cytosol, golgi 87.92 77.01
CDX70614 Canola cytosol, mitochondrion, peroxisome, plastid 89.58 76.92
CDX78633 Canola cytosol 89.79 76.15
Solyc03g065350.1.1 Tomato cytosol, extracellular, peroxisome 42.5 72.6
CDX85269 Canola cytosol 31.67 69.09
Bra023520.1-P Field mustard golgi 87.92 67.95
CDX85549 Canola cytosol 88.12 63.04
Os04t0581600-01 Rice cytosol, mitochondrion, peroxisome 20.0 43.84
GSMUA_Achr4P10820_001 Banana plasma membrane 66.25 42.8
Os03t0147150-00 Rice plasma membrane 17.5 34.43
Protein Annotations
KEGG:00040+1.1.1.22KEGG:00053+1.1.1.22KEGG:00520+1.1.1.22Gene3D:1.20.5.100MapMan:3.13.3.1Gene3D:3.40.50.720
EntrezGene:548074InterPro:6-PGluconate_DH-like_C_sfUniProt:A0A0R0IRU3EnsemblPlantsGene:GLYMA_08G243000GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0003979GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0005737GO:GO:0005829GO:GO:0006024GO:GO:0006065GO:GO:0006139
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016491GO:GO:0016616
GO:GO:0051287GO:GO:0055114EnsemblPlants:KRH44990ProteinID:KRH44990ProteinID:KRH44990.1InterPro:NAD(P)-bd_dom_sf
PFAM:PF00984PFAM:PF03720PFAM:PF03721PIRSF:PIRSF000124PIRSF:PIRSF500133PANTHER:PTHR11374
PANTHER:PTHR11374:SF30MetaCyc:PWY-7346MetaCyc:PWY-7820UniProt:Q96558SMART:SM00984SUPFAM:SSF48179
SUPFAM:SSF51735SUPFAM:SSF52413TIGRFAMs:TIGR03026EMBL:U53418InterPro:UDP-Glc/GDP-ManInterPro:UDP-Glc/GDP-Man_DH_C
InterPro:UDP-Glc/GDP-Man_DH_C_sfInterPro:UDP-Glc/GDP-Man_DH_NInterPro:UDP-Glc/GDP-Man_DH_dimerInterPro:UDPglc_DH_eukUniParc:UPI0000137AEDSEG:seg
Description
UGD1hypothetical protein
Coordinates
chr8:-:20811395..20814308
Molecular Weight (calculated)
52944.5 Da
IEP (calculated)
5.814
GRAVY (calculated)
-0.090
Length
480 amino acids
Sequence
(BLAST)
001: MVKICCIGAG YVGGPTMAVI ALKCPSIEVA VVDISKSRIA AWNSDQLPIY EPGLDGVVKQ CRGKNLFFST DVEKHVFEAD IVFVSVNTPT KTQGLGAGKA
101: ADLTYWESAA RMIADVSKSD KIVVEKSTVP VKTAEAIEKI LTHNSKGIKF QILSNPEFLA EGTAIKDLFN PDRVLIGGRE TPEGQKAIQT LKDVYAQWVP
201: EERILTTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GANVQQVSYS VGTDSRIGPK FLNASVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI
301: KINDYQKSRF VNRVVASMFN TVSNKKIAIL GFAFKKDTGD TRETPAIDVC QGLLGDKANL SIYDPQVTED QIQRDLSMNK FDWDHPIHLQ PTSPTTVKKV
401: SVVWDAYEAT KDAHGLCILT EWDEFKTLDY QKIFDNMQKP AFVFDGRNIV DADKLREIGF IVYSIGKPLD PWLKDMPAVA
Best Arabidopsis Sequence Match ( AT5G15490.1 )
(BLAST)
001: MVKICCIGAG YVGGPTMAVI ALKCPSVEVA VVDISVPRIN AWNSDQLPIY EPGLDDVVKQ CRGKNLFFST DVEKHVREAD IVFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSVSD KIVVEKSTVP VKTAEAIEKI LTHNSKGIKF QILSNPEFLA EGTAIEDLFM PDRVLIGGRE TTEGFAAVKA LKDIYAQWVP
201: EERILTTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GANVSEVSYA VGKDSRIGPK FLNSSVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI
301: KINDYQKTRF VNRIVSSMFN TVSNKKIAVL GFAFKKDTGD TRETPAIDVC KGLLGDKARL SIYDPQVTEE QIQRDLTMNK FDWDHPLHLQ PMSPTTVKQV
401: SVAWDAYTAT KDAHGICILT EWDEFKKLDF QRIFENMQKP AFVFDGRNVV DADKLREIGF IVYSIGKPLD QWLKDMPALA
Arabidopsis Description
UGD3UDP-glucose 6-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UJW9]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.