CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, cytosol

Predictor Summary:

cytosol 3
extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY16166

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39320.1	CDY16166	AT1G26570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028430.1-P	Field mustard	cytosol, vacuole	99.58	99.58
CDX67427	Canola	cytosol, vacuole	99.58	99.58
Bra026264.1-P	Field mustard	extracellular, vacuole	50.21	97.57
AT5G39320.1	Thale cress	extracellular	97.29	97.29
CDX74475	Canola	extracellular	51.88	96.51
Solyc02g088690.2.1	Tomato	nucleus	59.38	90.19
CDY26425	Canola	extracellular, golgi	89.58	89.58
PGSC0003DMT400064713	Potato	cytosol	86.25	89.22
PGSC0003DMT400003666	Potato	extracellular, vacuole	89.38	89.19
KRH44990	Soybean	nucleus	89.17	89.17
KRH01262	Soybean	nucleus	88.54	88.54
KRG93627	Soybean	endoplasmic reticulum	88.33	88.33
HORVU4Hr1G008270.1	Barley	extracellular, golgi	88.12	88.12
KRH18404	Soybean	endoplasmic reticulum	87.92	87.92
GSMUA_Achr4P03270_001	Banana	cytosol	68.96	87.8
CDX69521	Canola	cytosol	67.29	87.53
Zm00001d034072_P001	Maize	extracellular	87.5	87.5
Os12t0443500-01	Rice	plasma membrane	87.5	87.5
KXG37519	Sorghum	cytosol, extracellular	87.5	87.5
GSMUA_Achr3P30310_001	Banana	cytosol	68.96	87.34
GSMUA_Achr4P14320_001	Banana	cytosol	74.58	87.32
Os03t0757900-01	Rice	plasma membrane	87.29	87.29
TraesCS5D01G404300.1	Wheat	golgi	87.29	87.29
TraesCS4D01G050600.2	Wheat	extracellular	87.29	87.29
TraesCS4B01G050400.1	Wheat	extracellular	87.29	87.29
HORVU5Hr1G096370.1	Barley	extracellular, golgi	87.29	87.29
Zm00001d013245_P001	Maize	plasma membrane	87.08	87.08
TraesCS5B01G399800.1	Wheat	unclear	87.08	87.08
TraesCS5A01G394900.1	Wheat	extracellular, golgi	87.08	87.08
TraesCS4A01G264600.1	Wheat	extracellular	86.88	86.88
Os12t0443600-01	Rice	extracellular	86.88	86.88
HORVU4Hr1G021270.1	Barley	extracellular, golgi	86.67	86.67
TraesCS4A01G199200.1	Wheat	extracellular, golgi	86.67	86.67
TraesCS4D01G113800.1	Wheat	extracellular, golgi	86.46	86.46
TraesCS4B01G116200.1	Wheat	extracellular, golgi	86.46	86.46
EER95293	Sorghum	extracellular, vacuole	86.25	86.25
GSMUA_Achr6P11090_001	Banana	cytosol	66.25	86.18
GSMUA_Achr4P07270_001	Banana	extracellular, golgi	67.5	86.17
GSMUA_Achr10P...	Banana	cytosol	66.46	84.84
Solyc02g067080.2.1	Tomato	extracellular	89.17	84.09
PGSC0003DMT400069038	Potato	cytosol	31.88	84.07
GSMUA_Achr11P...	Banana	cytosol	67.29	83.9
GSMUA_Achr6P23920_001	Banana	cytosol	57.08	83.79
GSMUA_Achr7P26580_001	Banana	cytosol	22.5	83.08
Os03t0425600-00	Rice	plasma membrane	82.71	82.54
GSMUA_Achr3P18750_001	Banana	extracellular, golgi	61.67	82.22
Os03t0604200-01	Rice	plasma membrane	81.88	81.54
CDX86369	Canola	cytosol	15.62	81.52
CDY16166	Canola	cytosol	81.25	81.08
Zm00001d033188_P001	Maize	extracellular	81.04	80.87
TraesCS4B01G077100.1	Wheat	cytosol, vacuole	80.83	80.83
TraesCS4A01G237900.1	Wheat	cytosol, vacuole	80.62	80.46
TraesCS4D01G075600.1	Wheat	cytosol, vacuole	80.62	80.46
KXG38049	Sorghum	endoplasmic reticulum, extracellular	80.62	77.56
CDX90989	Canola	cytosol, golgi	87.29	76.46
CDX70614	Canola	cytosol, mitochondrion, peroxisome, plastid	88.96	76.39
CDX78633	Canola	cytosol	88.96	75.44
Solyc03g065350.1.1	Tomato	cytosol, extracellular, peroxisome	42.08	71.89
CDX85269	Canola	cytosol	31.46	68.64
CDX85549	Canola	cytosol	87.5	62.59
CDY15951	Canola	extracellular	8.33	55.56
Os04t0581600-01	Rice	cytosol, mitochondrion, peroxisome	20.0	43.84
GSMUA_Achr4P10820_001	Banana	plasma membrane	66.46	42.93
Os03t0147150-00	Rice	plasma membrane	17.29	34.02

Protein Annotations

KEGG:00040+1.1.1.22	KEGG:00053+1.1.1.22	KEGG:00500+1.1.1.22	KEGG:00520+1.1.1.22	Gene3D:1.20.5.100	MapMan:3.13.3.1
Gene3D:3.40.50.720	InterPro:6-PGluconate_DH-like_C_sf	GO:A0A078HGY9	UniProt:A0A078HGY9	EnsemblPlants:CDY37001	ProteinID:CDY37001
ProteinID:CDY37001.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003979	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00063183001	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00984	PFAM:PF03720	PFAM:PF03721	PIRSF:PIRSF000124
PIRSF:PIRSF500133	PANTHER:PTHR11374	PANTHER:PTHR11374:SF30	MetaCyc:PWY-7346	SMART:SM00984	SUPFAM:SSF48179
SUPFAM:SSF51735	SUPFAM:SSF52413	TIGRFAMs:TIGR03026	InterPro:UDP-Glc/GDP-Man	InterPro:UDP-Glc/GDP-Man_DH_C	InterPro:UDP-Glc/GDP-Man_DH_C_sf
InterPro:UDP-Glc/GDP-Man_DH_N	InterPro:UDP-Glc/GDP-Man_DH_dimer	InterPro:UDPglc_DH_euk	UniPathway:UPA00038	UniParc:UPI0004EADC47	:

Description

BnaC06g12620DUDP-glucose 6-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A078HGY9]

Coordinates

chrLK032389:-:102917..105034

Molecular Weight (calculated)

53099.8 Da

IEP (calculated)

5.547

GRAVY (calculated)

-0.049

Length

480 amino acids

Sequence
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPHIEVA VVDISVPRIN AWNSDQLPIY EPGLEDIVKQ CRGKNLFFST DVEKHVREAD IVFVSVNTPT KTTGLGAGKA
101: ADLTYWESAA RMIADVSASD KIVVEKSTVP VKTAEAIEKI LMHNSKGIKF QILSNPEFLA EGTAIADLFN PDRVLIGGRE TPEGFNAVQT LKEVYANWVP
201: EDQIITTNLW SAELSKLAAN AFLAQRISSV NAMSALCEST GADVTQVAYA VGTDSRIGPK FLNASVGFGG SCFQKDILNL VYICQCNGLP EVAEYWKQVI
301: KINDYQKNRF VNRIVSSMFN TVSNKKVAIL GFAFKKDTGD TRETPAIDVC KGLLGDKAQI SIYDPQVTEE QIQRDLAMKK FDWDHPLHLQ PMSPTTVKQV
401: SVKWDAYEAT KDAHAVCVLT EWDEFKSLDY QKIFDNMQKP AFIFDGRNVL NVDKLREIGF IVYSIGKPLD AWLKDMPAFV

Best Arabidopsis Sequence Match ( AT5G39320.1 )
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPDIEVA VVDISVPRIN AWNSDQLPIY EPGLDDIVKQ CRGKNLFFST DVEKHVREAD IVFVSVNTPT KTTGLGAGKA
101: ADLTYWESAA RMIADVSVSD KIVVEKSTVP VKTAEAIEKI LMHNSKGIKF QILSNPEFLA EGTAIADLFN PDRVLIGGRE TPEGFKAVQT LKEVYANWVP
201: EGQIITTNLW SAELSKLAAN AFLAQRISSV NAMSALCEST GADVTQVSYA VGTDSRIGSK FLNASVGFGG SCFQKDILNL VYICQCNGLP EVAEYWKQVI
301: KINDYQKNRF VNRIVSSMFN TVSNKKVAIL GFAFKKDTGD TRETPAIDVC KGLLGDKAQI SIYDPQVTEE QIQRDLSMKK FDWDHPLHLQ PMSPTTVKQV
401: SVTWDAYEAT KDAHAVCVLT EWDEFKSLDY QKIFDNMQKP AFIFDGRNIM NVNKLREIGF IVYSIGKPLD PWLKDMPAFV

Arabidopsis Description

UGD4UDP-glucose 6-dehydrogenase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FM01]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.