Skip to main content
crop-pal logo
Wheat
Search for another protein from :
Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi

Predictor Summary:
  • extracellular 4
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
  • golgi 4
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi
Any Predictor:cytosol, secretory
iPSORT:secretory
MultiLoc:cytosol
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:golgi
 golgi: 25769308
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS4A01G199200.1
TraesCS4A01G237900.1
TraesCS4A01G264600.1
TraesCS4B01G050400.1
TraesCS4B01G077100.1
TraesCS4B01G116200.1
TraesCS4D01G050600.2
TraesCS4D01G075600.1
TraesCS4D01G113800.1
TraesCS5A01G394900.1
TraesCS5B01G399800.1
TraesCS5D01G404300.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G39320.1 TraesCS4A01G199200.1 AT1G26570.1 21798944
AT5G39320.1 TraesCS4A01G237900.1 AT1G26570.1 21798944
AT5G39320.1 TraesCS4A01G264600.1 AT1G26570.1 21798944
AT5G39320.1 TraesCS4B01G050400.1 AT1G26570.1 21798944
AT5G39320.1 TraesCS4B01G077100.1 AT1G26570.1 21798944
AT5G39320.1 TraesCS4B01G116200.1 AT1G26570.1 21798944
AT5G39320.1 TraesCS4D01G050600.2 AT1G26570.1 21798944
AT5G39320.1 TraesCS4D01G075600.1 AT1G26570.1 21798944
AT5G39320.1 TraesCS4D01G113800.1 AT1G26570.1 21798944
AT5G39320.1 TraesCS5A01G394900.1 AT1G26570.1 21798944
AT5G39320.1 TraesCS5B01G399800.1 AT1G26570.1 21798944
AT5G39320.1 TraesCS5D01G404300.1 AT1G26570.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5B01G399800.1 Wheat unclear 99.79 99.79
TraesCS5A01G394900.1 Wheat extracellular, golgi 99.38 99.38
HORVU5Hr1G096370.1 Barley extracellular, golgi 97.5 97.5
TraesCS4D01G050600.2 Wheat extracellular 96.04 96.04
Os12t0443500-01 Rice plasma membrane 94.58 94.58
KXG37519 Sorghum cytosol, extracellular 94.58 94.58
Zm00001d034072_P001 Maize extracellular 94.38 94.38
Solyc02g088690.2.1 Tomato nucleus 62.08 94.3
Zm00001d013245_P001 Maize plasma membrane 93.96 93.96
PGSC0003DMT400003666 Potato extracellular, vacuole 91.04 90.85
TraesCS4D01G113800.1 Wheat extracellular, golgi 90.83 90.83
Bra008695.1-P Field mustard extracellular, golgi 90.62 90.62
CDY26425 Canola extracellular, golgi 90.62 90.62
CDX69521 Canola cytosol 69.58 90.51
Bra006303.1-P Field mustard extracellular, vacuole 90.0 90.0
AT5G15490.1 Thale cress extracellular, vacuole 90.0 90.0
KRH44990 Soybean nucleus 89.58 89.58
KRH01262 Soybean nucleus 89.38 89.38
PGSC0003DMT400064713 Potato cytosol 86.25 89.22
KRG93627 Soybean endoplasmic reticulum 88.96 88.96
KRH70872 Soybean endoplasmic reticulum 88.75 88.75
KRH18404 Soybean endoplasmic reticulum 88.75 88.75
KRH75016 Soybean endoplasmic reticulum 88.54 88.54
AT3G29360.1 Thale cress cytosol, vacuole 88.54 88.54
PGSC0003DMT400087395 Potato cytosol, golgi 88.12 88.12
Bra026264.1-P Field mustard extracellular, vacuole 45.21 87.85
CDX67427 Canola cytosol, vacuole 87.5 87.5
Bra028430.1-P Field mustard cytosol, vacuole 87.5 87.5
CDY37001 Canola cytosol, vacuole 87.29 87.29
AT5G39320.1 Thale cress extracellular 87.29 87.29
CDX74475 Canola extracellular 46.88 87.21
Solyc03g115380.1.1 Tomato nucleus, unclear 87.08 87.08
Bra028234.1-P Field mustard extracellular, vacuole 86.88 86.88
Solyc06g069550.1.1 Tomato extracellular 86.67 86.67
PGSC0003DMT400083187 Potato extracellular 86.04 86.04
Solyc02g067080.2.1 Tomato extracellular 89.79 84.68
PGSC0003DMT400069038 Potato cytosol 31.88 84.07
AT1G26570.1 Thale cress cytosol, extracellular 84.17 83.99
TraesCS4D01G075600.1 Wheat cytosol, vacuole 83.75 83.58
AT3G01010.1 Thale cress cytosol 27.29 82.91
Bra024708.1-P Field mustard cytosol, extracellular 82.29 82.12
CDY16166 Canola cytosol 81.88 81.7
KRH03109 Soybean cytosol 78.96 79.12
KRH56847 Soybean cytosol 78.54 78.87
KRG89491 Soybean cytosol 48.12 78.31
Bra025395.1-P Field mustard cytosol 15.42 77.89
CDX70614 Canola cytosol, mitochondrion, peroxisome, plastid 90.21 77.46
CDX90989 Canola cytosol, golgi 88.12 77.19
CDX86369 Canola cytosol 14.79 77.17
CDX78633 Canola cytosol 90.21 76.5
KRH15845 Soybean cytosol 52.5 76.13
Solyc03g065350.1.1 Tomato cytosol, extracellular, peroxisome 42.92 73.31
Bra023520.1-P Field mustard golgi 88.12 68.12
CDX85269 Canola cytosol 29.79 65.0
CDX85549 Canola cytosol 88.33 63.19
Bra030352.1-P Field mustard extracellular 7.08 47.22
CDY15951 Canola extracellular 7.08 47.22
Protein Annotations
KEGG:00040+1.1.1.22KEGG:00053+1.1.1.22KEGG:00520+1.1.1.22Gene3D:1.20.5.100MapMan:3.13.3.1Gene3D:3.40.50.720
InterPro:6-PGluconate_DH-like_C_sfGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003979GO:GO:0005488
GO:GO:0008150GO:GO:0008152GO:GO:0016616GO:GO:0051287GO:GO:0055114InterPro:NAD(P)-bd_dom_sf
PFAM:PF00984PFAM:PF03720PFAM:PF03721PIRSF:PIRSF000124PIRSF:PIRSF500133PANTHER:PTHR11374
PANTHER:PTHR11374:SF30SMART:SM00984SUPFAM:SSF48179SUPFAM:SSF51735SUPFAM:SSF52413TIGRFAMs:TIGR03026
EnsemblPlantsGene:TraesCS5D01G404300EnsemblPlants:TraesCS5D01G404300.1InterPro:UDP-Glc/GDP-ManInterPro:UDP-Glc/GDP-Man_DH_CInterPro:UDP-Glc/GDP-Man_DH_C_sfInterPro:UDP-Glc/GDP-Man_DH_N
InterPro:UDP-Glc/GDP-Man_DH_dimerInterPro:UDPglc_DH_euk::::
Description
No Description!
Coordinates
chr5D:+:469501796..469503238
Molecular Weight (calculated)
52604.2 Da
IEP (calculated)
6.030
GRAVY (calculated)
-0.057
Length
480 amino acids
Sequence
(BLAST)
001: MVKICCIGAG YVGGPTMAVI AIKCPAIEVV VVDISKPRID AWNSDTLPIY EPGLDDVVKA CRGKNLFFST DVEKHVAEAD IIFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSKSD KIVVEKSTVP VKTAEAIEKI LTHNSKGINY QILSNPEFLA EGTAIEDLFK PDRVLIGGRE TPGGQKAVQA LKEVYAHWVP
201: EENIITTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GANVSEVSYA IGKDSRIGPK FLNASVGFGG SCFQKDILNL VYICECNGLP EVANYWKQVI
301: KINDYQKSRF VNRVVSSMFN TVSGKKIAVL GFAFKKDTGD TRETPAIDVC KGLVGDKAQV SIYDPQVTEE QIQRDLAMNK FDWDHPMHLQ PTSPTAVKQV
401: SVVWDAYEAA KGAHGVCILT EWDEFKKLDY QKIFDNMQKP AFVFDGRNVV DAEKLREIGF IVYSIGKPLD GWLKDMPAVA
Best Arabidopsis Sequence Match ( AT5G15490.1 )
(BLAST)
001: MVKICCIGAG YVGGPTMAVI ALKCPSVEVA VVDISVPRIN AWNSDQLPIY EPGLDDVVKQ CRGKNLFFST DVEKHVREAD IVFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSVSD KIVVEKSTVP VKTAEAIEKI LTHNSKGIKF QILSNPEFLA EGTAIEDLFM PDRVLIGGRE TTEGFAAVKA LKDIYAQWVP
201: EERILTTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GANVSEVSYA VGKDSRIGPK FLNSSVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI
301: KINDYQKTRF VNRIVSSMFN TVSNKKIAVL GFAFKKDTGD TRETPAIDVC KGLLGDKARL SIYDPQVTEE QIQRDLTMNK FDWDHPLHLQ PMSPTTVKQV
401: SVAWDAYTAT KDAHGICILT EWDEFKKLDF QRIFENMQKP AFVFDGRNVV DADKLREIGF IVYSIGKPLD QWLKDMPALA
Arabidopsis Description
UGD3UDP-glucose 6-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UJW9]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.