Factsheet for Zm00001d013245_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

extracellular: 20408568
plasma membrane: 23353019
plasma membrane: 23508561

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013245_P001
Zm00001d033188_P001
Zm00001d034072_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39320.1	Zm00001d013245_P001	AT1G26570.1	21798944
AT5G39320.1	Zm00001d033188_P001	AT1G26570.1	21798944
AT5G39320.1	Zm00001d034072_P001	AT1G26570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034072_P001	Maize	extracellular	98.54	98.54
KXG37519	Sorghum	cytosol, extracellular	98.54	98.54
Os12t0443600-01	Rice	extracellular	95.42	95.42
Os12t0443500-01	Rice	plasma membrane	95.0	95.0
Os03t0757900-01	Rice	plasma membrane	94.79	94.79
TraesCS5B01G399800.1	Wheat	unclear	94.17	94.17
TraesCS5D01G404300.1	Wheat	golgi	93.96	93.96
HORVU5Hr1G096370.1	Barley	extracellular, golgi	93.96	93.96
TraesCS5A01G394900.1	Wheat	extracellular, golgi	93.75	93.75
TraesCS4D01G050600.2	Wheat	extracellular	93.33	93.33
TraesCS4A01G264600.1	Wheat	extracellular	93.12	93.12
Solyc02g088690.2.1	Tomato	nucleus	61.25	93.04
HORVU4Hr1G008270.1	Barley	extracellular, golgi	92.71	92.71
TraesCS4B01G050400.1	Wheat	extracellular	92.5	92.5
KRH44990	Soybean	nucleus	90.21	90.21
KRH18404	Soybean	endoplasmic reticulum	90.21	90.21
PGSC0003DMT400003666	Potato	extracellular, vacuole	90.21	90.02
KRG93627	Soybean	endoplasmic reticulum	89.79	89.79
KRH01262	Soybean	nucleus	89.79	89.79
Bra008695.1-P	Field mustard	extracellular, golgi	89.58	89.58
CDY26425	Canola	extracellular, golgi	89.58	89.58
PGSC0003DMT400064713	Potato	cytosol	86.25	89.22
Bra006303.1-P	Field mustard	extracellular, vacuole	88.96	88.96
CDX69521	Canola	cytosol	68.33	88.89
AT5G15490.1	Thale cress	extracellular, vacuole	88.75	88.75
AT3G29360.1	Thale cress	cytosol, vacuole	88.54	88.54
KRH70872	Soybean	endoplasmic reticulum	88.12	88.12
KRH75016	Soybean	endoplasmic reticulum	87.92	87.92
PGSC0003DMT400087395	Potato	cytosol, golgi	87.5	87.5
Bra026264.1-P	Field mustard	extracellular, vacuole	45.0	87.45
VIT_14s0108g01590.t01	Wine grape	cytosol	14.38	87.34
CDY37001	Canola	cytosol, vacuole	87.08	87.08
Bra028430.1-P	Field mustard	cytosol, vacuole	87.08	87.08
CDX67427	Canola	cytosol, vacuole	87.08	87.08
AT5G39320.1	Thale cress	extracellular	86.88	86.88
CDX74475	Canola	extracellular	46.67	86.82
Bra028234.1-P	Field mustard	extracellular, vacuole	86.46	86.46
Solyc03g115380.1.1	Tomato	nucleus, unclear	86.46	86.46
Solyc06g069550.1.1	Tomato	extracellular	86.04	86.04
PGSC0003DMT400083187	Potato	extracellular	85.42	85.42
Solyc02g067080.2.1	Tomato	extracellular	89.79	84.68
Zm00001d033188_P001	Maize	extracellular	84.38	84.2
PGSC0003DMT400069038	Potato	cytosol	31.46	82.97
AT1G26570.1	Thale cress	cytosol, extracellular	82.92	82.74
AT3G01010.1	Thale cress	cytosol	26.88	81.65
Bra024708.1-P	Field mustard	cytosol, extracellular	81.67	81.5
CDY16166	Canola	cytosol	81.25	81.08
Bra025395.1-P	Field mustard	cytosol	16.04	81.05
CDX86369	Canola	cytosol	15.42	80.43
KRH03109	Soybean	cytosol	78.96	79.12
KRH56847	Soybean	cytosol	78.54	78.87
KRG89491	Soybean	cytosol	47.71	77.63
KRH15845	Soybean	cytosol	53.12	77.04
CDX70614	Canola	cytosol, mitochondrion, peroxisome, plastid	88.96	76.39
CDX90989	Canola	cytosol, golgi	87.08	76.28
CDX78633	Canola	cytosol	89.17	75.62
Solyc03g065350.1.1	Tomato	cytosol, extracellular, peroxisome	42.92	73.31
CDX85269	Canola	cytosol	31.04	67.73
Bra023520.1-P	Field mustard	golgi	87.08	67.31
CDX85549	Canola	cytosol	87.29	62.44
CDY15951	Canola	extracellular	7.29	48.61
Bra030352.1-P	Field mustard	extracellular	7.29	48.61

Protein Annotations

KEGG:00040+1.1.1.22	KEGG:00053+1.1.1.22	KEGG:00520+1.1.1.22	Gene3D:1.20.5.100	EntrezGene:100282847	MapMan:3.13.3.1
Gene3D:3.40.50.720	InterPro:6-PGluconate_DH-like_C_sf	ProteinID:AQK62747.1	UniProt:B7ZYX8	EMBL:BT054520	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003979	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00984
PFAM:PF03720	PFAM:PF03721	PIRSF:PIRSF000124	PIRSF:PIRSF500133	PANTHER:PTHR11374	PANTHER:PTHR11374:SF30
SMART:SM00984	SUPFAM:SSF48179	SUPFAM:SSF51735	SUPFAM:SSF52413	TIGRFAMs:TIGR03026	InterPro:UDP-Glc/GDP-Man
InterPro:UDP-Glc/GDP-Man_DH_C	InterPro:UDP-Glc/GDP-Man_DH_C_sf	InterPro:UDP-Glc/GDP-Man_DH_N	InterPro:UDP-Glc/GDP-Man_DH_dimer	InterPro:UDPglc_DH_euk	UniParc:UPI00001540BF
EnsemblPlantsGene:Zm00001d013245	EnsemblPlants:Zm00001d013245_P001	EnsemblPlants:Zm00001d013245_T001	:	:	:

Description

UDP-glucose 6-dehydrogenase

Coordinates

chr5:+:6952560..6954002

Molecular Weight (calculated)

52940.6 Da

IEP (calculated)

5.784

GRAVY (calculated)

-0.072

Length

480 amino acids

Sequence
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPDIEVV VVDISKPRIE AWNSDTLPIY EPGLDDVVKQ CRGRNLFFST DVEKHVAEAD IIFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSKSD KIVVEKSTVP VKTAEAIEKI LTHNSKGINY QILSNPEFLA EGTAIEDLFK PDRVLIGGRE TPEGRKAVQV LKDVYAHWVP
201: EDRILTTNLW SAELSKLAAN AFLAQRISSV NAISALCEAT GANVSEVAYA VGKDTRIGPK FLNASVGFGG SCFQKDILNL VYICECNGLP EVANYWKQVI
301: RINDYQKSRF VNRVVASMFN TVAGKKIAVL GFAFKKDTGD TRETPAIDVC KGLLGDKAQI SIYDPQVTED QIQRDLAMNK FDWDHPMHLQ PTSPTAIKQV
401: SCVWDAYEAT KGAHGVCILT EWDEFKTLDY QKIFDNMQKP AFVFDGRNIV DPEKLREIGF IVYSIGKPLD AWLKDMPAVA

Best Arabidopsis Sequence Match ( AT3G29360.2 )
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPDVEVA VVDISVPRIN AWNSDTLPIY EPGLDDVVKQ CRGKNLFFST DVEKHVREAD IVFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSVSD KIVVEKSTVP VKTAEAIEKI LTHNSKGIKF QILSNPEFLA EGTAIKDLFN PDRVLIGGRE TPEGFKAVQT LKNVYAHWVP
201: EGQIITTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GADVTQVSYA VGTDSRIGPK FLNSSVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI
301: KINDYQKSRF VNRVVSSMFN SVSNKKIAVL GFAFKKDTGD TRETPAIDVC KGLLEDKARL SIYDPQVTED QIQRDLSMNK FDWDHPLHLQ PMSPTTVKQV
401: TVTWDAYEAT KDAHGICIMT EWDEFKNLDF QKIFDNMQKP AFVFDGRNIM NLQKLREIGF IVYSIGKPLD DWLKDMPAVA

Arabidopsis Description

UGD2UDP-glucose 6-dehydrogenase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIA8]
SUBAcon: [vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.