Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 4
- plasma membrane 4
- endoplasmic reticulum 4
- vacuole 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY16166 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G39320.1 | CDY16166 | AT1G26570.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g088690.2.1 | Tomato | nucleus | 86.43 | 70.57 |
| CDX86369 | Canola | cytosol | 24.42 | 68.48 |
| CDY15951 | Canola | extracellular | 15.12 | 54.17 |
| Bra028234.1-P | Field mustard | extracellular, vacuole | 97.67 | 52.5 |
| CDX67427 | Canola | cytosol, vacuole | 97.29 | 52.29 |
| AT5G39320.1 | Thale cress | extracellular | 96.9 | 52.08 |
| CDY37001 | Canola | cytosol, vacuole | 96.51 | 51.88 |
| Solyc03g065350.1.1 | Tomato | cytosol, extracellular, peroxisome | 54.65 | 50.18 |
| CDY26425 | Canola | extracellular, golgi | 90.7 | 48.75 |
| KRH18404 | Soybean | endoplasmic reticulum | 89.53 | 48.12 |
| KRG93627 | Soybean | endoplasmic reticulum | 89.15 | 47.92 |
| KRH44990 | Soybean | nucleus | 89.15 | 47.92 |
| PGSC0003DMT400003666 | Potato | extracellular, vacuole | 88.76 | 47.61 |
| KRH01262 | Soybean | nucleus | 88.37 | 47.5 |
| HORVU4Hr1G008270.1 | Barley | extracellular, golgi | 87.6 | 47.08 |
| Zm00001d034072_P001 | Maize | extracellular | 87.21 | 46.88 |
| KXG37519 | Sorghum | cytosol, extracellular | 87.21 | 46.88 |
| TraesCS5A01G394900.1 | Wheat | extracellular, golgi | 87.21 | 46.88 |
| TraesCS5B01G399800.1 | Wheat | unclear | 87.21 | 46.88 |
| TraesCS5D01G404300.1 | Wheat | golgi | 87.21 | 46.88 |
| TraesCS4D01G050600.2 | Wheat | extracellular | 86.82 | 46.67 |
| Os12t0443600-01 | Rice | extracellular | 86.82 | 46.67 |
| TraesCS4B01G050400.1 | Wheat | extracellular | 86.82 | 46.67 |
| Zm00001d013245_P001 | Maize | plasma membrane | 86.82 | 46.67 |
| HORVU5Hr1G096370.1 | Barley | extracellular, golgi | 86.82 | 46.67 |
| Os03t0757900-01 | Rice | plasma membrane | 86.43 | 46.46 |
| Os12t0443500-01 | Rice | plasma membrane | 86.43 | 46.46 |
| TraesCS4A01G264600.1 | Wheat | extracellular | 86.43 | 46.46 |
| EER95293 | Sorghum | extracellular, vacuole | 86.43 | 46.46 |
| TraesCS4A01G199200.1 | Wheat | extracellular, golgi | 85.66 | 46.04 |
| HORVU4Hr1G021270.1 | Barley | extracellular, golgi | 85.66 | 46.04 |
| TraesCS4B01G116200.1 | Wheat | extracellular, golgi | 85.66 | 46.04 |
| TraesCS4D01G113800.1 | Wheat | extracellular, golgi | 85.66 | 46.04 |
| PGSC0003DMT400064713 | Potato | cytosol | 81.4 | 45.26 |
| Os03t0604200-01 | Rice | plasma membrane | 84.5 | 45.23 |
| TraesCS4B01G077100.1 | Wheat | cytosol, vacuole | 83.72 | 45.0 |
| CDY16166 | Canola | cytosol | 83.72 | 44.91 |
| TraesCS4D01G075600.1 | Wheat | cytosol, vacuole | 83.72 | 44.91 |
| TraesCS4A01G237900.1 | Wheat | cytosol, vacuole | 83.33 | 44.7 |
| GSMUA_Achr4P14320_001 | Banana | cytosol | 70.93 | 44.63 |
| Solyc02g067080.2.1 | Tomato | extracellular | 87.98 | 44.6 |
| Zm00001d033188_P001 | Maize | extracellular | 82.56 | 44.28 |
| Os03t0425600-00 | Rice | plasma membrane | 81.78 | 43.87 |
| KXG38049 | Sorghum | endoplasmic reticulum, extracellular | 82.56 | 42.69 |
| CDX90989 | Canola | cytosol, golgi | 90.31 | 42.52 |
| GSMUA_Achr4P03270_001 | Banana | cytosol | 61.63 | 42.18 |
| GSMUA_Achr3P30310_001 | Banana | cytosol | 61.63 | 41.95 |
| CDX70614 | Canola | cytosol, mitochondrion, peroxisome, plastid | 90.31 | 41.68 |
| GSMUA_Achr3P18750_001 | Banana | extracellular, golgi | 57.75 | 41.39 |
| GSMUA_Achr4P07270_001 | Banana | extracellular, golgi | 60.08 | 41.22 |
| CDX78633 | Canola | cytosol | 90.31 | 41.17 |
| GSMUA_Achr11P... | Banana | cytosol | 60.47 | 40.52 |
| GSMUA_Achr10P... | Banana | cytosol | 58.91 | 40.43 |
| GSMUA_Achr6P11090_001 | Banana | cytosol | 56.98 | 39.84 |
| Os04t0581600-01 | Rice | cytosol, mitochondrion, peroxisome | 32.56 | 38.36 |
| CDX85549 | Canola | cytosol | 90.31 | 34.72 |
| CDX69521 | Canola | cytosol | 49.22 | 34.42 |
| GSMUA_Achr6P23920_001 | Banana | cytosol | 41.86 | 33.03 |
| CDX85269 | Canola | cytosol | 27.52 | 32.27 |
| Os03t0147150-00 | Rice | plasma membrane | 26.36 | 27.87 |
| GSMUA_Achr4P10820_001 | Banana | plasma membrane | 56.98 | 19.78 |
| PGSC0003DMT400069038 | Potato | cytosol | 6.2 | 8.79 |
| GSMUA_Achr7P26580_001 | Banana | cytosol | 2.71 | 5.38 |
Protein Annotations
| KEGG:00040+1.1.1.22 | KEGG:00053+1.1.1.22 | KEGG:00500+1.1.1.22 | KEGG:00520+1.1.1.22 | Gene3D:1.20.5.100 | MapMan:3.13.3.1 |
| Gene3D:3.40.50.720 | InterPro:6-PGluconate_DH-like_C_sf | GO:A0A078CCD5 | EnsemblPlants:CDX74475 | ProteinID:CDX74475 | ProteinID:CDX74475.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016616 | GO:GO:0051287 | GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00114357001 | InterPro:NAD(P)-bd_dom_sf | PFAM:PF00984 |
| PFAM:PF03721 | PANTHER:PTHR11374 | PANTHER:PTHR11374:SF30 | MetaCyc:PWY-7346 | SUPFAM:SSF48179 | SUPFAM:SSF51735 |
| TIGRFAMs:TIGR03026 | InterPro:UDP-Glc/GDP-Man | InterPro:UDP-Glc/GDP-Man_DH_N | InterPro:UDP-Glc/GDP-Man_DH_dimer | UniPathway:UPA00038 | UniParc:UPI0004EEB016 |
Description
BnaA04g09140D
Coordinates
chrLK031801:-:584623..585890
Molecular Weight (calculated)
27769.5 Da
IEP (calculated)
4.957
GRAVY (calculated)
0.195
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKICCIGAG YVGGPTMAVI ALKCPHVEVA VVDISVPRIN AWNSDQLPIY EPGLEDIVKQ CRGKNLFFST DVEKHVREAD IVFVSVNTPT KTTGLGAGKA
101: ADLTYWESAA RMIADVSVSD KIVVEKSTVP VKTAEAIEKI LMHNSKGIKF QILSNPEFLA EGTAIADLFN PDRVLIGGRE TPEGFKAVQT LKEVYANWVP
201: EGQIITTNLW SAELSKLAAN AFLAQRISSV NAMSALCEST GADVTQVAGL VLGFTIWD
101: ADLTYWESAA RMIADVSVSD KIVVEKSTVP VKTAEAIEKI LMHNSKGIKF QILSNPEFLA EGTAIADLFN PDRVLIGGRE TPEGFKAVQT LKEVYANWVP
201: EGQIITTNLW SAELSKLAAN AFLAQRISSV NAMSALCEST GADVTQVAGL VLGFTIWD
001: MVKICCIGAG YVGGPTMAVM ALKCPEIEVV VVDISEPRIN AWNSDRLPIY EPGLEDVVKQ CRGKNLFFST DVEKHVFESD IVFVSVNTPT KTQGLGAGKA
101: ADLTYWESAA RMIADVSKSS KIVVEKSTVP VRTAEAIEKI LTHNSKGIEF QILSNPEFLA EGTAIKDLYN PDRVLIGGRD TAAGQKAIKA LRDVYAHWVP
201: VEQIICTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GADVTQVAHA VGTDTRIGPK FLNASVGFGG SCFQKDILNL IYICECNGLP EAANYWKQVV
301: KVNDYQKIRF ANRVVSSMFN TVSGKKIAIL GFAFKKDTGD TRETPAIDVC NRLVADKAKL SIYDPQVLEE QIRRDLSMAR FDWDHPVPLQ QIKAEGISEQ
401: VNVVSDAYEA TKDAHGLCVL TEWDEFKSLD FKKIFDNMQK PAFVFDGRNV VDAVKLREIG FIVYSIGKPL DSWLKDMPAV A
101: ADLTYWESAA RMIADVSKSS KIVVEKSTVP VRTAEAIEKI LTHNSKGIEF QILSNPEFLA EGTAIKDLYN PDRVLIGGRD TAAGQKAIKA LRDVYAHWVP
201: VEQIICTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GADVTQVAHA VGTDTRIGPK FLNASVGFGG SCFQKDILNL IYICECNGLP EAANYWKQVV
301: KVNDYQKIRF ANRVVSSMFN TVSGKKIAIL GFAFKKDTGD TRETPAIDVC NRLVADKAKL SIYDPQVLEE QIRRDLSMAR FDWDHPVPLQ QIKAEGISEQ
401: VNVVSDAYEA TKDAHGLCVL TEWDEFKSLD FKKIFDNMQK PAFVFDGRNV VDAVKLREIG FIVYSIGKPL DSWLKDMPAV A
Arabidopsis Description
UGD1UDP-glucose 6-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178WCI2]
SUBAcon: [extracellular,cytosol]
SUBAcon: [extracellular,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.